Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 6.7e-108 394.0 202 100.0
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 6.5e-95 350.9 204 90.2
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 2.2e-82 309.3 206 83.0
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.3e-76 289.3 201 76.1
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 1.5e-75 286.6 200 76.5
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.6e-75 285.8 201 75.1
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 9.8e-75 283.9 203 74.4
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 6.4e-58 228.0 205 62.9
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 2.4e-57 226.1 205 63.4
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 1.2e-56 223.8 205 62.9
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.7e-56 222.6 207 62.3
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 7.8e-56 221.1 210 60.0
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 6.6e-55 218.0 213 61.0
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.1e-54 217.2 211 59.2
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 1.2e-53 213.8 200 60.0
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 2.1e-53 213.0 194 64.4
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 6.8e-52 208.0 201 56.7
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 6.8e-52 208.0 203 60.1
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 7.6e-51 204.5 210 58.1
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 7.6e-51 204.5 211 57.8
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 8.3e-50 201.1 203 58.1
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.4e-49 200.3 203 58.1
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 2.1e-48 196.4 206 55.8
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.0e-47 194.1 202 55.9
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.1e-47 191.8 202 55.9
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 4.3e-46 188.7 206 54.4
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 7.3e-46 188.0 211 54.0
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 1.2e-45 187.2 192 58.3
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 6.2e-45 184.9 189 55.0
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 8.1e-45 184.5 201 56.2
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 1.1e-44 184.1 192 57.3
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.8e-44 183.3 212 52.8
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 1.8e-44 183.3 204 54.9
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 2.4e-44 183.0 215 56.3
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 2.6e-43 179.5 203 54.7
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 3.4e-43 179.1 205 56.1
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 9.9e-43 177.6 214 52.8
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 6.4e-42 174.9 207 54.1
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.4e-41 173.7 213 53.5
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.6e-40 170.2 192 53.6
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 3.5e-40 169.1 219 50.2
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 6.0e-40 168.3 200 54.5
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.3e-39 167.2 209 53.6
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 3.0e-39 166.0 209 50.7
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 6.6e-39 164.9 205 53.2
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.5e-38 162.9 211 49.8
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 5.6e-38 161.8 205 51.2
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.1e-37 159.8 210 50.0
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 4.8e-37 158.7 198 52.0
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.1e-36 156.0 204 52.5
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.1e-36 156.0 204 52.5
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 5.3e-36 155.2 204 50.5
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 9.0e-36 154.5 212 47.6
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 1.2e-35 154.1 204 46.6
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 1.5e-35 153.7 204 47.1
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.0e-35 153.3 203 52.2
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.6e-35 152.9 190 49.5
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 5.8e-35 151.8 205 48.3
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 9.9e-35 151.0 213 46.0
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 4.9e-34 148.7 194 50.0
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 1.9e-33 146.7 206 48.5
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 1.9e-33 146.7 179 51.4
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 2.4e-33 146.4 197 50.8
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 7.1e-33 144.8 169 52.1
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 7.1e-33 144.8 214 46.7
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 9.3e-33 144.4 202 50.0
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 1.6e-32 143.7 189 47.6
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 2.7e-32 142.9 206 48.1
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 6.0e-32 141.7 207 47.3
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 1.3e-31 140.6 200 45.5
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 1.3e-31 140.6 186 47.8
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.3e-31 140.6 198 48.0
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 1.3e-31 140.6 209 45.9
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 5.1e-31 138.7 220 46.8
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.1e-30 137.5 187 49.7
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 1.5e-30 137.1 166 47.0
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 1.5e-30 137.1 180 50.0
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 1.5e-30 137.1 207 47.8
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 9.6e-30 134.4 214 43.0
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 1.3e-29 134.0 207 42.5
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 2.1e-29 133.3 167 45.5
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 2.8e-29 132.9 212 45.8
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 3.6e-29 132.5 173 50.9
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 6.2e-29 131.7 163 51.5
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 1.8e-28 130.2 215 42.8
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 4.0e-28 129.0 191 45.0
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 9.0e-28 127.9 201 43.8
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 9.0e-28 127.9 140 55.0
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.2e-27 127.5 176 47.2
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.2e-27 127.5 187 46.0
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 9.9e-27 124.4 214 41.1
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 8.4e-26 121.3 171 47.4
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 1.4e-25 120.6 179 42.5
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 1.4e-25 120.6 166 47.6
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 5.4e-25 118.6 172 52.9
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 5.4e-25 118.6 200 42.5
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.1e-25 118.2 175 49.1
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 9.3e-25 117.9 194 43.3
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 9.3e-25 117.9 204 41.2
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.6e-24 117.1 190 44.2
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 2.7e-24 116.3 204 47.1
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 6.7e-23 111.7 209 40.2
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 1.1e-22 110.9 208 39.4
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 2.5e-22 109.8 194 43.3
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 9.6e-22 107.8 199 40.7
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 1.1e-20 104.4 165 46.1
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 2.4e-20 103.2 207 37.7
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 2.6e-19 99.8 185 41.1
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 4.5e-19 99.0 223 37.7
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 7.6e-19 98.2 185 40.0
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 1.3e-18 97.4 193 40.9
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 1.3e-18 97.4 171 38.6
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.3e-18 97.4 183 41.5
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 3.8e-18 95.9 198 40.4
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 6.5e-18 95.1 155 44.5
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 8.4e-18 94.7 183 42.1
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 1.9e-17 93.6 182 41.8
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 1.9e-17 93.6 182 41.8
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 1.9e-17 93.6 177 43.5
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 2.5e-17 93.2 182 41.8
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 7.1e-17 91.7 180 41.1
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 7.1e-17 91.7 191 39.3
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 9.3e-17 91.3 191 38.7
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 9.3e-17 91.3 179 39.7
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 1.2e-16 90.9 182 41.2
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 3.5e-16 89.4 211 34.6
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 6.0e-16 88.6 142 45.1
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 7.9e-16 88.2 196 37.2
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 7.9e-16 88.2 184 37.0
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 3.0e-15 86.3 199 36.2
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 5.1e-15 85.5 203 35.5
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 5.1e-15 85.5 203 35.5
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 1.1e-14 84.3 186 41.4
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 2.5e-14 83.2 180 41.1
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 4.3e-14 82.4 111 48.6
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 5.7e-14 82.0 201 40.8
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 9.6e-14 81.3 188 41.5
Gohir.A05G312801 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.6e-13 80.5 73 56.2
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 2.1e-13 80.1 201 34.8
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 2.1e-13 80.1 189 39.2
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 2.8e-13 79.7 195 38.5
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 3.7e-13 79.3 114 44.7
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.4e-12 77.4 86 54.7
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 2.4e-12 76.6 191 38.2
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 6.9e-12 75.1 148 41.2
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.5e-11 73.9 167 37.1
ClCG01G022190 Citrullus lanatus HOM05D004361 ORTHO05D004706 5.8e-11 72.0 201 34.3
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 5.8e-11 72.0 179 35.8
Gohir.A05G327000 Gossypium hirsutum HOM05D002183 ORTHO05D004706 3.8e-10 69.3 64 57.8
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 5.0e-10 68.9 187 36.9
Gohir.A12G262800 Gossypium hirsutum HOM05D002183 ORTHO05D002169 6.5e-10 68.6 113 38.9
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 2.5e-09 66.6 79 46.8
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 3.2e-09 66.2 52 61.5
CDE05G3057 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 5.5e-09 65.5 164 33.5
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 2.1e-08 63.5 234 32.5
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 4.6e-08 62.4 169 31.4
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 4.6e-08 62.4 95 40.0
Sed0009826 Sechium edule HOM05D004361 ORTHO05D004706 6.1e-08 62.0 189 32.3
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 1.0e-07 61.2 173 33.5
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 1.0e-07 61.2 61 52.5
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 6.7e-07 58.5 176 36.9
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 1.1e-06 57.8 169 37.9
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 1.5e-06 57.4 180 32.2
HPP92_001786 Vanilla planifolia HOM05D033938 ORTHO05D004706 1.5e-06 57.4 58 51.7
TPR.G22022 Trifolium pratense HOM05D004361 ORTHO05D004706 2.5e-06 56.6 94 38.3
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 4.3e-06 55.8 208 29.8
Dinv26546 Davidia involucrata HOM05D009517 ORTHO05D011612 7.4e-06 55.1 148 29.7


User provided reference genes

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