Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 1.6e-263 912.1 432 100.0
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 6.2e-236 820.5 421 92.6
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 4.8e-220 767.7 428 85.7
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 2.0e-205 719.2 429 80.9
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 3.3e-205 718.4 424 80.7
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.0e-201 706.8 432 79.9
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 4.2e-192 674.9 421 77.7
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 1.4e-190 669.8 432 74.8
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 6.7e-190 667.5 443 75.8
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 2.0e-186 656.0 428 72.9
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 7.7e-186 654.1 432 75.5
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 1.2e-183 646.7 406 77.1
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 2.1e-183 646.0 408 76.7
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 3.6e-183 645.2 424 73.1
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.0e-182 643.7 443 73.6
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 1.4e-182 643.3 408 76.5
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 1.8e-182 642.9 432 74.1
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 2.3e-182 642.5 419 73.3
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 8.8e-182 640.6 408 76.2
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 3.3e-181 638.6 423 74.9
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 7.5e-181 637.5 429 72.0
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 6.3e-180 634.4 417 72.7
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 8.3e-180 634.0 423 71.9
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 4.1e-179 631.7 412 73.8
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 9.1e-179 630.6 422 72.5
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 4.5e-178 628.2 410 72.2
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 3.8e-177 625.2 431 69.1
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 3.2e-176 622.1 406 72.7
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 4.2e-176 621.7 392 77.0
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 9.4e-176 620.5 462 67.3
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 4.7e-175 618.2 436 69.3
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 1.3e-172 610.1 416 70.4
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 1.4e-171 606.7 392 73.0
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 5.4e-171 604.7 389 72.8
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 9.1e-171 604.0 414 69.6
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 2.0e-170 602.8 422 68.7
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 4.5e-170 601.7 405 72.3
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 2.3e-169 599.4 431 68.0
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 5.0e-169 598.2 376 73.9
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 8.6e-169 597.4 392 70.7
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 1.5e-168 596.7 412 69.4
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 1.5e-168 596.7 405 70.6
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 1.9e-168 596.3 422 67.8
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 4.2e-168 595.1 414 69.6
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 4.2e-168 595.1 397 72.8
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 1.2e-167 593.6 401 68.8
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 1.0e-166 590.5 389 71.7
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 2.3e-166 589.3 389 74.0
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 4.0e-166 588.6 397 70.0
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 4.0e-166 588.6 400 70.0
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 6.8e-166 587.8 446 64.8
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 6.8e-166 587.8 419 68.3
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 1.2e-165 587.0 396 69.7
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 1.2e-165 587.0 430 67.2
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 1.5e-165 586.6 406 67.5
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 2.0e-165 586.3 362 77.1
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 2.0e-165 586.3 433 66.7
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 7.5e-165 584.3 402 68.2
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 9.8e-165 583.9 438 64.8
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 1.3e-164 583.6 421 67.0
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 1.7e-164 583.2 400 67.8
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 1.7e-164 583.2 380 71.3
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 3.7e-164 582.0 402 69.9
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 4.9e-164 581.6 401 69.3
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 4.9e-164 581.6 401 69.3
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 4.9e-164 581.6 402 69.4
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 6.3e-164 581.3 399 70.2
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 1.1e-163 580.5 421 66.7
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 3.1e-163 578.9 402 68.7
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 7.0e-163 577.8 403 68.5
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 1.6e-162 576.6 437 64.8
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.7e-161 573.2 404 68.6
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 5.0e-161 571.6 403 69.0
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 5.0e-161 571.6 409 67.5
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 6.6e-161 571.2 403 68.7
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 2.1e-159 566.2 408 66.7
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 1.0e-158 563.9 379 71.2
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 8.9e-158 560.8 391 67.8
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 3.4e-157 558.9 382 69.6
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 1.7e-156 556.6 418 65.3
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 2.2e-156 556.2 418 66.7
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 3.2e-155 552.4 412 65.0
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 4.1e-155 552.0 451 63.0
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 2.0e-154 549.7 366 70.5
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 3.5e-146 522.3 424 60.6
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 5.1e-145 518.5 424 62.5
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 5.2e-142 508.4 422 59.5
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 1.3e-140 503.8 428 61.0
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 1.5e-136 490.3 395 60.0
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 4.7e-135 485.3 366 64.2
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 3.4e-133 479.2 400 55.5
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 1.3e-129 467.2 414 57.7
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 1.3e-127 460.7 371 59.8
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.8e-127 459.5 390 59.2
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 4.0e-126 455.7 325 66.5
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 6.4e-124 448.4 293 74.4
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 4.6e-122 442.2 323 68.1
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 5.3e-118 428.7 361 55.7
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 1.9e-115 420.2 307 67.4
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 7.4e-112 408.3 446 51.3
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 4.9e-108 395.6 367 51.0
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 9.3e-107 391.3 372 51.3
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 4.1e-94 349.4 258 67.1
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 2.5e-88 330.1 248 66.1
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 1.0e-81 308.1 413 41.9
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 3.9e-81 306.2 280 52.9
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 1.3e-79 301.2 182 75.8
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 7.0e-78 295.4 295 51.9
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 3.5e-77 293.1 466 42.1
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 1.3e-76 291.2 399 41.4
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.7e-76 290.8 171 76.0
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.7e-76 290.8 171 76.0
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 9.8e-64 248.4 146 76.0
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 3.6e-50 203.4 140 67.9
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 1.2e-48 198.4 130 76.2
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 1.8e-46 191.0 227 51.5
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 5.4e-46 189.5 296 36.5
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 5.9e-45 186.0 103 81.6
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 2.0e-40 171.0 120 63.3
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 2.0e-40 171.0 99 79.8
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.5e-37 160.2 111 69.4
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 4.6e-37 159.8 89 79.8
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 4.3e-35 153.3 96 76.0
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 7.3e-35 152.5 118 63.6
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 8.1e-26 122.5 74 67.6
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 2.9e-23 114.0 148 43.9
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 6.6e-20 102.8 201 36.8
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 3.4e-16 90.5 71 60.6
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 2.1e-10 71.2 354 25.1
HanXRQChr00c0537g0575611 Helianthus annuus HOM05D002999 ORTHO05D003137 3.1e-09 67.4 252 24.6
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 3.1e-09 67.4 247 26.7
FAN22G0904 Fragaria x ananassa HOM05D002999 ORTHO05D003137 4.0e-09 67.0 350 24.0
HanXRQChr15g0466521 Helianthus annuus HOM05D002999 ORTHO05D003137 4.0e-09 67.0 252 24.6
HanXRQChr09g0256871 Helianthus annuus HOM05D002999 ORTHO05D003137 5.3e-09 66.6 251 24.3
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 6.9e-09 66.2 212 27.8
Pp3c10_3720 Physcomitrium patens HOM05D002999 ORTHO05D003137 9.0e-09 65.9 352 23.0
Potri.014G136000 Populus trichocarpa HOM05D002999 ORTHO05D003137 2.6e-08 64.3 276 25.7
Sabra14G0102500 Salix brachista HOM05D002999 ORTHO05D003137 1.3e-07 62.0 154 29.2
Zm00001eb354420 Zea mays HOM05D002999 ORTHO05D003137 2.2e-07 61.2 271 24.0
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 3.8e-07 60.5 75 44.0
ECA247G2129 Erigeron canadensis HOM05D002999 ORTHO05D003137 3.8e-07 60.5 241 24.5
AagrBONN_evm.TU.Sc2ySwM_362.297 Anthoceros agrestis HOM05D002999 ORTHO05D003137 4.9e-07 60.1 231 25.1
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 8.4e-07 59.3 235 24.7
EL10Ac9g21730 Beta vulgaris HOM05D003825 ORTHO05D004491 1.1e-06 58.9 238 24.4
SalBow2G2809 Salvia bowleyana HOM05D002999 ORTHO05D003137 1.4e-06 58.5 179 27.9
Sopen06g003630 Solanum pennellii HOM05D002999 ORTHO05D003137 1.4e-06 58.5 238 25.2
Sc18g0004560 Simmondsia chinensis HOM05D003825 ORTHO05D004491 2.4e-06 57.8 217 24.9
unitig_749.g14054 Utricularia gibba HOM05D002999 ORTHO05D003137 2.4e-06 57.8 150 30.0
Manes.05G070800 Manihot esculenta HOM05D002999 ORTHO05D003137 4.2e-06 57.0 355 22.5
DCAR_018378 Daucus carota HOM05D002999 ORTHO05D003137 7.1e-06 56.2 220 25.0
Glyma.11G118500 Glycine max HOM05D003825 ORTHO05D004491 9.3e-06 55.8 287 22.3


User provided reference genes

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