Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1323400 Malus domestica HOM05D007756 ORTHO05D009403 1.5e-33 145.6 74 100.0
Prupe.4G039200 Prunus persica HOM05D007756 ORTHO05D009403 4.5e-17 90.9 54 88.9
RcHm_v2.0_Chr5g0006811 Rosa chinensis HOM05D007756 ORTHO05D009403 2.9e-16 88.2 61 73.8
RcHm_v2.0_Chr5g0006791 Rosa chinensis HOM05D007756 ORTHO05D009403 7.1e-15 83.6 61 70.5
RcHm_v2.0_Chr5g0006801 Rosa chinensis HOM05D007756 ORTHO05D009403 2.3e-13 78.6 61 65.6
FAN16G3405 Fragaria x ananassa HOM05D007756 ORTHO05D009403 1.5e-12 75.9 62 64.5
FAN11G3808 Fragaria x ananassa HOM05D007756 ORTHO05D009403 1.9e-12 75.5 62 64.5
FvH4_3g04381 Fragaria vesca HOM05D007756 ORTHO05D009403 7.4e-12 73.6 64 64.1
Phvul.002G223500 Phaseolus vulgaris HOM05D007756 ORTHO05D009403 9.0e-10 66.6 61 60.7
CiPaw.09G159600 Carya illinoinensis HOM05D007756 ORTHO05D009403 2.0e-09 65.5 46 71.7
CiPaw.09G159700 Carya illinoinensis HOM05D007756 ORTHO05D009403 7.6e-09 63.5 45 71.1
VMungo0251G2707 Vigna mungo HOM05D007756 ORTHO05D009403 7.6e-09 63.5 65 58.5
Eucgr.E03374 Eucalyptus grandis HOM05D007756 ORTHO05D009403 1.7e-08 62.4 40 75.0
Glyma.07G191400 Glycine max HOM05D007756 ORTHO05D009403 2.2e-08 62.0 40 80.0
Glyma.08G057900 Glycine max HOM05D007756 ORTHO05D009403 2.2e-08 62.0 40 80.0
Cfa000371 Carpinus fangiana HOM05D007756 ORTHO05D009403 3.8e-08 61.2 51 58.8
Hma1.2p1_0144F.1_g064970 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 3.8e-08 61.2 61 59.0
FAN11G0760 Fragaria x ananassa HOM05D007756 ORTHO05D009403 4.9e-08 60.8 60 58.3
CiPaw.10G120600 Carya illinoinensis HOM05D007756 ORTHO05D009403 8.4e-08 60.1 39 74.4
Ciclev10017282m.g Citrus clementina HOM05D007756 ORTHO05D009403 8.4e-08 60.1 69 55.1
GSVIVG01005837001 Vitis vinifera HOM05D007756 ORTHO05D009403 1.1e-07 59.7 45 64.4
Cfa000372 Carpinus fangiana HOM05D007756 ORTHO05D009403 1.4e-07 59.3 45 71.1
Eucgr.E03372 Eucalyptus grandis HOM05D007756 ORTHO05D009403 1.4e-07 59.3 51 62.7
Gohir.D10G020400 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.9e-07 58.9 44 63.6
Ciclev10017421m.g Citrus clementina HOM05D007756 ORTHO05D009403 2.5e-07 58.5 50 64.0
Manes.16G038800 Manihot esculenta HOM05D007756 ORTHO05D009403 2.5e-07 58.5 45 68.9
Thecc.06G196200 Theobroma cacao HOM05D007756 ORTHO05D009403 2.5e-07 58.5 46 60.9
TAR679G0001 Trochodendron aralioides HOM05D007756 ORTHO05D009403 2.5e-07 58.5 45 62.2
Lalb_Chr16g0383441 Lupinus albus HOM05D007756 ORTHO05D009403 3.2e-07 58.2 44 70.5
Gohir.A10G019600 Gossypium hirsutum HOM05D007756 ORTHO05D009403 4.2e-07 57.8 44 61.4
Gohir.D10G020250 Gossypium hirsutum HOM05D007756 ORTHO05D009403 4.2e-07 57.8 44 61.4
Eucgr.E03371 Eucalyptus grandis HOM05D007756 ORTHO05D009403 7.1e-07 57.0 38 73.7
Eucgr.E03373 Eucalyptus grandis HOM05D007756 ORTHO05D009403 7.1e-07 57.0 38 73.7
Gohir.A10G019400 Gossypium hirsutum HOM05D007756 ORTHO05D009403 9.3e-07 56.6 44 59.1
Lalb_Chr05g0218241 Lupinus albus HOM05D007756 ORTHO05D009403 9.3e-07 56.6 51 62.7
Nn1g06699 Nelumbo nucifera HOM05D007756 ORTHO05D009403 9.3e-07 56.6 45 66.7
Cfa000373 Carpinus fangiana HOM05D007756 ORTHO05D009403 1.2e-06 56.2 45 68.9
Ca_18499_v3 Cicer arietinum L. HOM05D007756 ORTHO05D009403 1.2e-06 56.2 48 66.7
Sed0008410 Sechium edule HOM05D007756 ORTHO05D009403 1.2e-06 56.2 39 69.2
Lalb_Chr09g0327421 Lupinus albus HOM05D007756 ORTHO05D009403 1.6e-06 55.8 48 66.7
Manes.16G022400 Manihot esculenta HOM05D007756 ORTHO05D009403 3.5e-06 54.7 41 68.3
PGSC0003DMG400022448 Solanum tuberosum HOM05D007756 ORTHO05D009403 3.5e-06 54.7 40 70.0
Lj6g0018917 Lotus japonicus HOM05D020221 ORTHO05D009403 4.6e-06 54.3 44 65.9
Sed0004694 Sechium edule HOM05D007756 ORTHO05D009403 6.0e-06 53.9 41 63.4
ClCG01G022590 Citrullus lanatus HOM05D007756 ORTHO05D009403 7.9e-06 53.5 41 63.4


User provided reference genes

Program Settings