Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1320400 Malus domestica HOM05D002808 ORTHO05D003135 2.4e-153 545.4 272 100.0
MD05G1320900 Malus domestica HOM05D002808 ORTHO05D003135 4.6e-136 488.0 269 91.8
MD05G1320700 Malus domestica HOM05D002808 ORTHO05D003135 5.3e-132 474.6 280 87.9
MD10G1299500 Malus domestica HOM05D002808 ORTHO05D003135 3.6e-104 382.1 268 75.0
TWI38G0056 Tripterygium wilfordii HOM05D002808 ORTHO05D003135 3.7e-53 212.6 266 45.5
QL05p038939 Quercus lobata HOM05D002808 ORTHO05D003135 1.6e-48 197.2 269 44.2
CiPaw.09G054500 Carya illinoinensis HOM05D002808 ORTHO05D003135 2.1e-48 196.8 235 48.9
Medtr4g089110 Medicago truncatula HOM05D002808 ORTHO05D003135 3.6e-48 196.1 256 44.1
Ca_18516_v3 Cicer arietinum L. HOM05D002808 ORTHO05D003135 6.2e-48 195.3 218 49.5
Lalb_Chr09g0327531 Lupinus albus HOM05D002808 ORTHO05D003135 1.8e-47 193.7 241 46.9
Haze_06527 Corylus avellana HOM05D002808 ORTHO05D003135 1.2e-46 191.0 261 45.2
TAR627G0014 Trochodendron aralioides HOM05D002808 ORTHO05D003135 1.5e-46 190.7 225 45.8
ClCG03G005720 Citrullus lanatus HOM05D002808 ORTHO05D003135 2.0e-46 190.3 273 43.6
Glyma.13G183300 Glycine max HOM05D002808 ORTHO05D003135 2.0e-46 190.3 259 44.8
CsaV3_1G011990 Cucumis sativus L. HOM05D002808 ORTHO05D003135 2.6e-46 189.9 224 48.2
Sabra11G0032700 Salix brachista HOM05D002808 ORTHO05D003135 2.6e-46 189.9 260 41.9
Phvul.002G225500 Phaseolus vulgaris HOM05D002808 ORTHO05D003135 1.3e-45 187.6 267 42.7
Glyma.07G193100 Glycine max HOM05D002808 ORTHO05D003135 1.7e-45 187.2 263 43.3
Potri.004G038400 Populus trichocarpa HOM05D002808 ORTHO05D003135 2.9e-45 186.4 230 45.2
Thecc.06G193100 Theobroma cacao HOM05D002808 ORTHO05D003135 6.4e-45 185.3 228 46.5
Prupe.4G041300 Prunus persica HOM05D002808 ORTHO05D003135 8.3e-45 184.9 139 71.2
Lj4g0010618 Lotus japonicus HOM05D002808 ORTHO05D003135 1.1e-44 184.5 229 45.0
Lalb_Chr05g0218311 Lupinus albus HOM05D002808 ORTHO05D003135 7.1e-44 181.8 254 43.3
Potri.011G047100 Populus trichocarpa HOM05D002808 ORTHO05D003135 9.2e-44 181.4 263 42.6
Duzib235G0556 Durio zibethinus HOM05D002808 ORTHO05D003135 1.2e-43 181.0 228 46.1
Sed0028146 Sechium edule HOM05D002808 ORTHO05D003135 1.0e-42 177.9 226 46.5
VMungo0251G2678 Vigna mungo HOM05D002808 ORTHO05D003135 5.1e-42 175.6 276 41.7
Lj6g0001777 Lotus japonicus HOM05D002808 ORTHO05D003135 6.6e-42 175.3 256 41.0
Duzib192G0379 Durio zibethinus HOM05D002808 ORTHO05D003135 8.6e-42 174.9 229 46.3
Aqoxy1G02592 Aquilegia oxysepala HOM05D002808 ORTHO05D003135 1.5e-41 174.1 262 38.9
Ciclev10017687m.g Citrus clementina HOM05D002808 ORTHO05D003135 1.9e-41 173.7 212 45.3
Sabra04G0023500 Salix brachista HOM05D002808 ORTHO05D003135 2.5e-41 173.3 275 37.8
MELO3C002575.2 Cucumis melo HOM05D002808 ORTHO05D003135 1.6e-40 170.6 236 44.5
Dinv07522 Davidia involucrata HOM05D002808 ORTHO05D003135 1.6e-40 170.6 223 43.9
BcaB07g31258 Brassica carinata HOM05D002808 ORTHO05D003135 8.1e-40 168.3 230 47.4
CARHR052240 Cardamine hirsuta HOM05D002808 ORTHO05D003135 1.1e-39 167.9 234 46.6
Thhalv10023269m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 1.4e-39 167.5 258 44.6
BcaB04g20313 Brassica carinata HOM05D002808 ORTHO05D003135 3.1e-39 166.4 230 46.1
TAR626G1215 Trochodendron aralioides HOM05D002808 ORTHO05D003135 3.1e-39 166.4 225 45.3
BcaC04g22302 Brassica carinata HOM05D002808 ORTHO05D003135 5.2e-39 165.6 261 43.7
C09p20960 Brassica napus HOM05D002808 ORTHO05D003135 5.2e-39 165.6 261 43.7
BolC9t54993H Brassica oleracea HOM05D002808 ORTHO05D003135 5.2e-39 165.6 261 43.7
BraA09t37329Z Brassica rapa HOM05D002808 ORTHO05D003135 5.2e-39 165.6 264 44.3
AT1G61080 Arabidopsis thaliana HOM05D002808 ORTHO05D003135 6.8e-39 165.2 247 45.3
Carub.0002s0411 Capsella rubella HOM05D002808 ORTHO05D003135 6.8e-39 165.2 237 47.3
Manes.17G042200 Manihot esculenta HOM05D002808 ORTHO05D003135 6.8e-39 165.2 234 41.5
Sp2g03440 Schrenkiella parvula HOM05D002808 ORTHO05D003135 1.2e-38 164.5 229 46.3
AL2G15350 Arabidopsis lyrata HOM05D002808 ORTHO05D003135 2.0e-38 163.7 265 44.2
Psat7g111840 Pisum sativum HOM05D002808 ORTHO05D003135 2.0e-38 163.7 266 40.6
TAR626G1282 Trochodendron aralioides HOM05D002808 ORTHO05D003135 3.4e-38 162.9 225 44.9
TPR.G12045 Trifolium pratense HOM05D002808 ORTHO05D003135 4.4e-38 162.5 255 40.8
Atru.chr10.1958 Acer truncatum HOM05D002808 ORTHO05D003135 5.8e-38 162.2 231 45.9
COL.COLO4_22781 Corchorus olitorius HOM05D002808 ORTHO05D003135 1.7e-37 160.6 228 41.7
THA.LOC104809567 Tarenaya hassleriana HOM05D002808 ORTHO05D003135 1.7e-37 160.6 225 46.7
arahy.Tifrunner.gnm1.ann1.2NE36Q Arachis hypogaea HOM05D002808 ORTHO05D003135 2.9e-37 159.8 215 40.9
PSO675G4664 Papaver somniferum HOM05D002808 ORTHO05D003135 3.8e-37 159.5 222 42.3
PGR004G0378 Punica granatum HOM05D002808 ORTHO05D003135 3.8e-37 159.5 235 41.7
PSO541G4209 Papaver somniferum HOM05D002808 ORTHO05D003135 4.9e-37 159.1 222 42.3
arahy.Tifrunner.gnm1.ann1.29L0YD Arachis hypogaea HOM05D002808 ORTHO05D003135 8.4e-37 158.3 221 42.5
Ca_00303_v3 Cicer arietinum L. HOM05D002808 ORTHO05D003135 8.4e-37 158.3 232 40.5
arahy.Tifrunner.gnm1.ann1.KT8XA7 Arachis hypogaea HOM05D002808 ORTHO05D003135 1.9e-36 157.1 221 42.5
C01p37760 Brassica napus HOM05D002808 ORTHO05D003135 1.9e-36 157.1 268 38.1
Gorai.011G025400 Gossypium raimondii HOM05D002808 ORTHO05D003135 1.9e-36 157.1 239 42.7
Cpa.g.sc530.4 Carica papaya HOM05D002808 ORTHO05D003135 2.4e-36 156.8 201 46.3
A01p29880 Brassica napus HOM05D002808 ORTHO05D003135 1.2e-35 154.5 227 43.6
Cc09_g10780 Coffea canephora HOM05D002808 ORTHO05D003135 6.0e-35 152.1 269 37.2
Glyma.13G242700 Glycine max HOM05D002808 ORTHO05D003135 6.0e-35 152.1 215 41.9
arahy.Tifrunner.gnm1.ann1.V35IN5 Arachis hypogaea HOM05D002808 ORTHO05D003135 1.0e-34 151.4 215 40.5
BolC1t03738H Brassica oleracea HOM05D002808 ORTHO05D003135 2.3e-34 150.2 275 37.1
A09p16920 Brassica napus HOM05D002808 ORTHO05D003135 3.0e-34 149.8 277 39.0
Aa31LG9G9460 Aethionema arabicum HOM05D002808 ORTHO05D003135 3.9e-34 149.4 264 36.4
Actinidia01909 Actinidia chinensis HOM05D002808 ORTHO05D003135 8.6e-34 148.3 219 41.1
Cc02_g12840 Coffea canephora HOM05D002808 ORTHO05D003135 8.6e-34 148.3 229 38.9
VMungo0540G0036 Vigna mungo HOM05D002808 ORTHO05D003135 8.6e-34 148.3 218 40.4
Psat1g206480 Pisum sativum HOM05D002808 ORTHO05D003135 1.1e-33 147.9 229 39.3
BraA01t03116Z Brassica rapa HOM05D002808 ORTHO05D003135 1.5e-33 147.5 234 42.3
THA.LOC104812819 Tarenaya hassleriana HOM05D002808 ORTHO05D003135 2.5e-33 146.7 243 39.1
RhsimUnG0043100 Rhododendron simsii HOM05D002808 ORTHO05D003135 3.3e-33 146.4 219 39.7
TPR.G36820 Trifolium pratense HOM05D002808 ORTHO05D003135 5.6e-33 145.6 258 36.0
Phvul.006G188600 Phaseolus vulgaris HOM05D002808 ORTHO05D003135 1.2e-32 144.4 215 41.4
BcaC09g49337 Brassica carinata HOM05D002808 ORTHO05D003135 2.1e-32 143.7 226 39.8
A09p25850 Brassica napus HOM05D002808 ORTHO05D003135 2.1e-32 143.7 249 37.3
BraA09t38155Z Brassica rapa HOM05D002808 ORTHO05D003135 2.1e-32 143.7 249 37.3
Medtr2g013000 Medicago truncatula HOM05D002808 ORTHO05D003135 2.8e-32 143.3 228 38.2
BcaC04g21359 Brassica carinata HOM05D002808 ORTHO05D003135 1.4e-31 141.0 243 37.4
C09p32730 Brassica napus HOM05D002808 ORTHO05D003135 1.4e-31 141.0 243 37.4
BolC9t56117H Brassica oleracea HOM05D002808 ORTHO05D003135 1.4e-31 141.0 243 37.4
Oeu038236.1 Olea europaea HOM05D002808 ORTHO05D003135 4.0e-31 139.4 216 40.7
SGA_v2.0_scaffold22G09764 Striga asiatica HOM05D002808 ORTHO05D003135 5.2e-31 139.0 244 37.3
BcaB01g01857 Brassica carinata HOM05D002808 ORTHO05D003135 8.9e-31 138.3 243 37.0
Aa31LG2G9520 Aethionema arabicum HOM05D002808 ORTHO05D003135 2.6e-30 136.7 234 41.0
AT4G04980 Arabidopsis thaliana HOM05D002808 ORTHO05D003135 4.4e-30 136.0 228 38.2
CSS0000867 Camellia sinensis var. sinensis HOM05D002808 ORTHO05D003135 1.3e-29 134.4 215 40.0
Thhalv10029342m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 1.7e-29 134.0 255 34.9
RcHm_v2.0_Chr5g0007591 Rosa chinensis HOM05D002808 ORTHO05D003135 3.8e-29 132.9 133 56.4
MSTRG.7317 Avicennia marina HOM05D002808 ORTHO05D003135 4.9e-29 132.5 219 37.9
Sp6g03960 Schrenkiella parvula HOM05D002808 ORTHO05D003135 6.4e-29 132.1 263 33.8
Nn2g14250 Nelumbo nucifera HOM05D002808 ORTHO05D003135 8.4e-29 131.7 226 36.7
AL6G48560 Arabidopsis lyrata HOM05D002808 ORTHO05D003135 1.1e-28 131.3 250 34.8
Sed0005619 Sechium edule HOM05D002808 ORTHO05D003135 1.4e-28 131.0 267 36.3
Sc17g0006360 Simmondsia chinensis HOM05D002808 ORTHO05D003135 1.9e-28 130.6 221 39.4
Carub.0006s3294 Capsella rubella HOM05D002808 ORTHO05D003135 2.4e-28 130.2 257 34.2
Lj1A1209T61 Lonicera japonica HOM05D002808 ORTHO05D003135 2.4e-28 130.2 261 35.2
GSVIVG01007118001 Vitis vinifera HOM05D002808 ORTHO05D003135 2.4e-28 130.2 273 32.6
CARHR252540 Cardamine hirsuta HOM05D002808 ORTHO05D003135 4.2e-28 129.4 250 35.6
Gohir.A06G125900 Gossypium hirsutum HOM05D002808 ORTHO05D003135 9.3e-28 128.3 225 37.3
CiPaw.03G174400 Carya illinoinensis HOM05D002808 ORTHO05D003135 1.2e-27 127.9 236 37.3
Nn1g06645 Nelumbo nucifera HOM05D002808 ORTHO05D003135 2.1e-27 127.1 218 37.2
Solyc02g078660.4 Solanum lycopersicum HOM05D002808 ORTHO05D003135 2.1e-27 127.1 262 35.1
Sopen02g023520 Solanum pennellii HOM05D002808 ORTHO05D003135 2.1e-27 127.1 262 35.1
QL08p038142 Quercus lobata HOM05D002808 ORTHO05D003135 2.7e-27 126.7 226 35.8
Gohir.D09G071400 Gossypium hirsutum HOM05D002808 ORTHO05D003135 6.0e-27 125.6 228 36.0
Gohir.D06G129900 Gossypium hirsutum HOM05D002808 ORTHO05D003135 1.0e-26 124.8 225 36.9
Gorai.010G151600 Gossypium raimondii HOM05D002808 ORTHO05D003135 1.0e-26 124.8 225 36.9
Manes.13G148600 Manihot esculenta HOM05D002808 ORTHO05D003135 1.7e-26 124.0 227 34.8
Thhalv10009997m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 2.3e-26 123.6 271 34.7
Peaxi162Scf00748g00011 Petunia axillaris HOM05D002808 ORTHO05D003135 3.3e-25 119.8 233 36.9
Haze_13133 Corylus avellana HOM05D002808 ORTHO05D003135 1.3e-24 117.9 229 36.2
AL1G22050 Arabidopsis lyrata HOM05D002808 ORTHO05D003135 2.1e-24 117.1 230 35.7
SalBow8G4287 Salvia bowleyana HOM05D002808 ORTHO05D003135 2.1e-24 117.1 228 36.0
SalBow8G5370 Salvia bowleyana HOM05D002808 ORTHO05D003135 2.1e-24 117.1 228 36.0
CARHR011260 Cardamine hirsuta HOM05D002808 ORTHO05D003135 2.8e-24 116.7 238 35.3
AT1G11070 Arabidopsis thaliana HOM05D002808 ORTHO05D003135 3.6e-24 116.3 245 35.5
Rhsim04G0067100 Rhododendron simsii HOM05D002808 ORTHO05D003135 3.6e-24 116.3 266 31.6
Sp1g09760 Schrenkiella parvula HOM05D002808 ORTHO05D003135 3.6e-24 116.3 219 37.9
Glyma.15G070800 Glycine max HOM05D002808 ORTHO05D003135 4.8e-24 115.9 215 34.9
EL10Ac8g20311 Beta vulgaris HOM05D002808 ORTHO05D003135 6.2e-24 115.5 269 34.2
Dinv12909 Davidia involucrata HOM05D000973 ORTHO05D000652 6.2e-24 115.5 254 34.6
Cfa014582 Carpinus fangiana HOM05D002808 ORTHO05D003135 1.1e-23 114.8 250 35.6
Hund21253 Selenicereus undatus HOM05D002808 ORTHO05D003135 1.8e-23 114.0 256 36.3
DCAR_028116 Daucus carota HOM05D002808 ORTHO05D003135 2.4e-23 113.6 223 34.5
CANSAT64G0853 Cannabis sativa HOM05D002808 ORTHO05D003135 4.0e-23 112.8 229 33.2
CAN.G289.35 Capsicum annuum HOM05D002808 ORTHO05D003135 5.3e-23 112.5 251 36.7
ATR0693G055 Amborella trichopoda HOM05D002808 ORTHO05D003135 3.4e-22 109.8 256 32.8
Dinv40529 Davidia involucrata HOM05D002808 ORTHO05D003135 3.4e-22 109.8 200 37.5
Migut.M01173 Erythranthe guttata HOM05D002808 ORTHO05D003135 5.8e-22 109.0 262 31.7
Peaxi162Scf00031g00821 Petunia axillaris HOM05D002808 ORTHO05D003135 5.8e-22 109.0 224 36.6
CAN.G1705.3 Capsicum annuum HOM05D002808 ORTHO05D003135 2.2e-21 107.1 265 32.5
vmacro03837 Vaccinium macrocarpon HOM05D002808 ORTHO05D003135 4.9e-21 105.9 219 30.6
PGSC0003DMG400022806 Solanum tuberosum HOM05D002808 ORTHO05D003135 6.4e-21 105.5 223 34.1
Peaxi162Scf01021g00005 Petunia axillaris HOM05D002808 ORTHO05D003135 4.2e-20 102.8 262 32.1
AUR62016958 Chenopodium quinoa HOM05D002808 ORTHO05D003135 1.6e-19 100.9 232 34.9
AUR62014773 Chenopodium quinoa HOM05D002808 ORTHO05D003135 3.5e-19 99.8 232 34.5
Solyc03g006530.3 Solanum lycopersicum HOM05D002808 ORTHO05D003135 3.5e-19 99.8 251 35.1
GSVIVG01030542001 Vitis vinifera HOM05D002808 ORTHO05D003135 3.5e-19 99.8 206 33.5
Cc03_g09780 Coffea canephora HOM05D002808 ORTHO05D003135 4.6e-19 99.4 160 40.0
Sopen10g004920 Solanum pennellii HOM05D002808 ORTHO05D003135 4.6e-19 99.4 263 30.4
BcaC07g41790 Brassica carinata HOM05D002808 ORTHO05D003135 7.9e-19 98.6 239 35.1
Gohir.A10G023400 Gossypium hirsutum HOM05D002808 ORTHO05D003135 7.9e-19 98.6 142 45.8
Solyc10g009140.3 Solanum lycopersicum HOM05D002808 ORTHO05D003135 7.9e-19 98.6 244 31.1
Gohir.D10G024200 Gossypium hirsutum HOM05D002808 ORTHO05D003135 1.0e-18 98.2 142 45.8
Nitab4.5_0009790g0010 Nicotiana tabacum HOM05D002808 ORTHO05D003135 1.3e-18 97.8 227 33.9
PGR042G1039 Punica granatum HOM05D002808 ORTHO05D003135 2.3e-18 97.1 263 30.4
Ah.09g235810 Amaranthus hybridus HOM05D002808 ORTHO05D003135 3.9e-18 96.3 223 33.6
PGSC0003DMG400026858 Solanum tuberosum HOM05D002808 ORTHO05D003135 3.9e-18 96.3 244 34.8
Sopen03g002530 Solanum pennellii HOM05D002808 ORTHO05D003135 6.7e-18 95.5 247 33.6
Nitab4.5_0003341g0020 Nicotiana tabacum HOM05D002808 ORTHO05D003135 1.5e-17 94.4 226 33.6
BraA06t23978Z Brassica rapa HOM05D002808 ORTHO05D003135 2.5e-17 93.6 265 30.6
A06p07770 Brassica napus HOM05D002808 ORTHO05D003135 5.6e-17 92.4 265 30.2
BolC5t29676H Brassica oleracea HOM05D002808 ORTHO05D003135 3.6e-16 89.7 233 33.5
C08p48350 Brassica napus HOM05D002808 ORTHO05D003135 6.2e-16 89.0 261 31.4
BolC8t52374H Brassica oleracea HOM05D002808 ORTHO05D003135 6.2e-16 89.0 261 31.4
Carub.0001s1063 Capsella rubella HOM05D002808 ORTHO05D003135 2.4e-15 87.0 198 33.8
C05p09360 Brassica napus HOM05D002808 ORTHO05D003135 5.3e-15 85.9 232 32.8
Cc05_g06820 Coffea canephora HOM05D002808 ORTHO05D003135 5.3e-15 85.9 243 30.0
Nn2g12560 Nelumbo nucifera HOM05D002808 ORTHO05D003135 1.2e-14 84.7 148 34.5
Aa31LG1G3840 Aethionema arabicum HOM05D002808 ORTHO05D003135 2.0e-14 84.0 164 36.0
Manes.16G024200 Manihot esculenta HOM05D002808 ORTHO05D003135 2.0e-14 84.0 107 47.7
A09p64840 Brassica napus HOM05D002808 ORTHO05D003135 2.6e-14 83.6 252 32.5
BraA09t41811Z Brassica rapa HOM05D002808 ORTHO05D003135 2.6e-14 83.6 252 32.5
Nitab4.5_0006098g0010 Nicotiana tabacum HOM05D002808 ORTHO05D003135 5.8e-14 82.4 224 30.4
ECA236G2337 Erigeron canadensis HOM05D002808 ORTHO05D003135 6.4e-13 79.0 189 31.2
Thhalv10029303m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 6.4e-13 79.0 150 36.0
Nitab4.5_0001820g0140 Nicotiana tabacum HOM05D002808 ORTHO05D003135 9.3e-12 75.1 104 45.2
CSS0014200 Camellia sinensis var. sinensis HOM05D002808 ORTHO05D003135 2.1e-11 73.9 222 31.1
Sabra16G0200400 Salix brachista HOM05D002808 ORTHO05D044790 2.7e-11 73.6 158 34.8
CAN.G1398.10 Capsicum annuum HOM05D002808 ORTHO05D003135 4.6e-11 72.8 139 37.4
HanXRQChr04g0124011 Helianthus annuus HOM05D002808 ORTHO05D003135 4.6e-11 72.8 168 32.1
Cfa014940 Carpinus fangiana HOM05D002808 ORTHO05D003135 1.0e-10 71.6 177 32.8
HPP92_016702 Vanilla planifolia HOM05D002808 ORTHO05D003135 1.8e-10 70.9 214 29.0
Potri.001G317001 Populus trichocarpa HOM05D002808 ORTHO05D003135 2.5e-09 67.0 215 28.8
Lsat_1_v5_gn_7_19381 Lactuca sativa HOM05D002808 ORTHO05D003135 1.3e-08 64.7 195 27.7
Nitab4.5_0001820g0170 Nicotiana tabacum HOM05D002808 ORTHO05D003135 1.3e-08 64.7 107 34.6
SHI01937 Sapria himalayana HOM05D002808 ORTHO05D003135 1.6e-08 64.3 73 46.6
Lj8A114G40 Lonicera japonica HOM05D002808 ORTHO05D003135 3.7e-08 63.2 121 32.2
SHI01938 Sapria himalayana HOM05D002808 ORTHO05D003135 3.7e-08 63.2 103 37.9
Haze_11623 Corylus avellana HOM05D002808 ORTHO05D044790 3.1e-07 60.1 105 35.2
Manes.03G146300 Manihot esculenta HOM05D002808 ORTHO05D003135 1.2e-06 58.2 142 33.8


User provided reference genes

Program Settings