Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 2.8e-255 884.8 446 100.0
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 8.7e-233 810.1 446 91.5
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 8.7e-225 783.5 446 88.1
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 1.8e-214 749.2 445 84.7
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 1.6e-210 736.1 443 83.7
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 3.5e-210 734.9 443 83.5
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 4.3e-208 728.0 442 82.8
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 4.5e-205 718.0 435 82.8
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 4.2e-195 684.9 448 77.5
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 1.5e-189 666.4 448 76.1
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.1e-187 660.2 448 74.6
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 1.1e-187 660.2 445 74.2
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 1.4e-187 659.8 445 74.2
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 5.5e-187 657.9 450 74.4
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 9.4e-187 657.1 437 75.5
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 1.2e-186 656.8 451 73.8
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 1.6e-186 656.4 443 75.4
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 3.6e-186 655.2 440 74.8
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 3.6e-186 655.2 450 74.0
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 6.1e-186 654.4 442 74.4
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 6.1e-186 654.4 445 74.6
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 6.1e-186 654.4 446 73.5
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 2.3e-185 652.5 449 73.9
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 8.8e-185 650.6 448 73.7
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 1.5e-184 649.8 435 73.6
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 7.4e-184 647.5 448 73.2
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 9.7e-184 647.1 448 73.9
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.3e-183 646.7 436 75.0
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 4.8e-183 644.8 445 74.4
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 8.2e-183 644.0 453 73.7
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 4.1e-182 641.7 445 73.9
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 2.6e-181 639.0 451 71.6
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 2.2e-180 636.0 443 72.2
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 2.2e-180 636.0 466 71.0
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 2.9e-180 635.6 448 69.0
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 2.9e-180 635.6 450 71.3
TWI63G1670 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 3.8e-180 635.2 460 70.4
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 5.0e-180 634.8 447 70.2
Gorai.010G152800 Gossypium raimondii HOM05D006332 ORTHO05D008421 6.5e-180 634.4 435 74.5
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 1.5e-179 633.3 447 72.7
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 3.2e-179 632.1 445 73.3
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 1.6e-178 629.8 440 73.2
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 1.8e-177 626.3 448 71.9
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 2.3e-177 625.9 447 70.2
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 4.0e-177 625.2 446 71.5
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 5.2e-177 624.8 447 72.0
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 1.5e-176 623.2 441 71.9
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 1.7e-175 619.8 446 70.4
Oeu053924.1 Olea europaea HOM05D006332 ORTHO05D008421 2.2e-175 619.4 440 70.5
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 3.7e-175 618.6 451 68.3
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 4.8e-175 618.2 449 71.5
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 6.3e-175 617.8 447 70.9
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 8.2e-175 617.5 453 70.6
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 2.4e-174 615.9 445 69.7
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 9.1e-174 614.0 447 71.1
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.9e-172 609.0 448 68.8
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 2.9e-172 609.0 445 71.0
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 3.8e-172 608.6 444 68.9
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 5.0e-172 608.2 448 69.2
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 8.5e-172 607.4 451 67.2
Gorai.011G026200 Gossypium raimondii HOM05D006332 ORTHO05D008421 4.2e-171 605.1 446 68.6
Gohir.D10G024900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 6.8e-169 597.8 441 68.5
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 6.8e-169 597.8 444 68.0
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 2.0e-168 596.3 450 67.3
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 2.8e-167 592.4 445 68.1
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 1.2e-165 587.0 454 67.8
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 2.0e-165 586.3 446 66.1
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 2.7e-165 585.9 497 63.8
ATR0680G340 Amborella trichopoda HOM05D006332 ORTHO05D008421 3.5e-165 585.5 440 68.9
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 2.3e-164 582.8 444 66.2
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 2.9e-164 582.4 448 67.0
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 5.0e-164 581.6 450 65.1
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 8.6e-164 580.9 447 65.3
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 3.3e-163 578.9 445 65.6
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 3.3e-163 578.9 445 66.7
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 3.6e-162 575.5 450 65.3
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 1.2e-160 570.5 437 66.8
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 9.8e-160 567.4 443 65.2
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 9.8e-160 567.4 443 65.2
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 1.3e-159 567.0 443 65.2
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 1.3e-159 567.0 443 65.2
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 3.7e-159 565.5 455 65.1
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 7.8e-157 557.8 437 65.4
CDE08G0172 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 1.0e-156 557.4 438 65.5
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 2.5e-155 552.7 454 61.5
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 4.0e-153 545.4 443 63.2
ECA248G3961 Erigeron canadensis HOM05D006332 ORTHO05D008421 3.4e-152 542.3 433 63.3
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 1.3e-151 540.4 445 63.1
Hma1.2p1_0126F.1_g059220 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.1e-150 537.3 456 61.6
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 1.4e-150 537.0 462 62.3
Nn1g04020 Nelumbo nucifera HOM05D006332 ORTHO05D008421 5.4e-150 535.0 370 72.4
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 4.6e-149 531.9 341 78.0
Hma1.2p1_0881F.1_g231960 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 3.3e-147 525.8 353 75.9
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 9.5e-147 524.2 447 61.1
SGA_v2.0_scaffold49G18281 Striga asiatica HOM05D006332 ORTHO05D008421 4.7e-146 521.9 466 59.2
CARHR143350 Cardamine hirsuta HOM05D006332 ORTHO05D008421 8.0e-146 521.2 393 66.9
Lsat_1_v5_gn_7_19001 Lactuca sativa HOM05D006332 ORTHO05D008421 6.8e-145 518.1 441 63.0
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 3.2e-142 509.2 441 61.9
DCAR_004087 Daucus carota HOM05D006332 ORTHO05D008421 8.1e-138 494.6 350 70.0
unitig_8.g3355 Utricularia gibba HOM05D006332 ORTHO05D008421 4.3e-131 472.2 460 57.0
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 5.6e-131 471.9 441 56.9
Lsat_1_v5_gn_1_127821 Lactuca sativa HOM05D006332 ORTHO05D008421 9.5e-131 471.1 448 57.4
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 6.8e-129 464.9 381 65.1
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 2.5e-123 446.4 359 64.1
Mapoly0122s0006 Marchantia polymorpha HOM05D006332 ORTHO05D008421 1.4e-121 440.7 447 49.9
AagrBONN_evm.TU.Sc2ySwM_344.1820 Anthoceros agrestis HOM05D006332 ORTHO05D008421 1.4e-118 430.6 446 50.0
Pp3c1_28670 Physcomitrium patens HOM05D006332 ORTHO05D008421 4.2e-118 429.1 451 49.7
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 5.4e-118 428.7 310 68.4
Atru.chr10.1934 Acer truncatum HOM05D006332 ORTHO05D008421 1.2e-117 427.6 288 74.7
Sc24g0000810 Simmondsia chinensis HOM05D006332 ORTHO05D008421 1.2e-117 427.6 305 70.2
SMO364G0571 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 9.6e-115 417.9 444 49.8
CBR_g24248 Chara braunii HOM05D006332 ORTHO05D008421 5.0e-87 325.9 459 42.0
SMO364G0067 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 1.1e-86 324.7 314 51.9
Gohir.A10G024325 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.1e-83 314.7 215 73.0
SHI01800 Sapria himalayana HOM05D006332 ORTHO05D008421 5.7e-83 312.4 285 60.0
Nitab4.5_0009738g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 7.0e-73 278.9 240 57.9
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 1.1e-70 271.6 212 61.8
Gohir.A10G024350 Gossypium hirsutum HOM05D006332 ORTHO05D008421 8.6e-47 192.2 160 60.0
SHI01798 Sapria himalayana HOM05D000002 ORTHO05D000001 5.9e-40 169.5 203 48.8
PRCOL_00003805 Prasinoderma coloniale HOM05D006332 ORTHO05D008421 7.8e-40 169.1 398 32.7
Atru.chr10.1933 Acer truncatum HOM05D006332 ORTHO05D008421 6.8e-36 156.0 119 66.4
Ciclev10009862m.g Citrus clementina HOM05D006332 ORTHO05D008421 2.3e-31 141.0 102 68.6
PSO017G7020 Papaver somniferum HOM05D006332 ORTHO05D000676 1.0e-23 115.5 113 47.8
PSO170G5489 Papaver somniferum HOM05D006332 ORTHO05D008421 3.6e-21 107.1 99 48.5
Nitab4.5_0009738g0030 Nicotiana tabacum HOM05D006332 ORTHO05D008421 2.9e-18 97.4 92 58.7
TPR.G24681 Trifolium pratense HOM05D006332 ORTHO05D001923 1.3e-15 88.6 62 69.4
Os10g0498800 Oryza sativa ssp. japonica HOM05D006332 ORTHO05D008421 1.9e-14 84.7 64 59.4
FAN09G0423 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.9e-11 72.4 67 58.2
TPR.G32042 Trifolium pratense HOM05D006332 ORTHO05D034078 6.4e-10 69.7 40 82.5
CDE02G4141 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 1.4e-09 68.6 142 33.8
FAN09G2993 Fragaria x ananassa HOM05D006332 ORTHO05D210550 1.9e-09 68.2 59 61.0
Cpa.g.sc777.3 Carica papaya HOM05D006332 ORTHO05D034078 3.0e-07 60.8 37 75.7


User provided reference genes

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