Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 0.0e+00 1454.5 748 100.0
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 0.0e+00 1205.7 736 86.0
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 4.6e-279 964.5 744 71.4
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 1.8e-251 872.8 750 64.8
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 4.7e-247 858.2 749 64.9
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 6.1e-247 857.8 749 64.6
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 8.8e-246 854.0 749 64.4
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 5.3e-243 844.7 749 63.8
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 5.9e-242 841.3 745 64.0
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 1.6e-226 790.0 747 60.0
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 3.7e-212 742.3 742 57.7
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 1.3e-209 733.8 746 56.6
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 1.4e-203 713.8 748 54.1
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 8.6e-201 704.5 756 55.4
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 5.6e-200 701.8 754 54.8
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 9.5e-200 701.0 754 54.8
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 1.6e-199 700.3 755 53.6
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 3.3e-192 676.0 745 54.1
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.8e-191 672.9 741 53.0
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 2.6e-189 666.4 739 53.0
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 6.4e-188 661.8 745 52.2
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 6.0e-186 655.2 737 51.7
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 2.1e-183 646.7 756 51.3
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 1.4e-182 644.0 757 52.6
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 1.2e-181 641.0 753 50.9
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 9.9e-181 637.9 654 56.7
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 2.9e-180 636.3 746 52.1
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 5.4e-179 632.1 754 51.9
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 1.7e-177 627.1 747 50.2
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 4.3e-176 622.5 757 50.6
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 2.1e-175 620.2 714 52.2
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 9.0e-174 614.8 714 50.8
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 1.5e-173 614.0 730 49.5
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.1e-171 607.8 749 48.6
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 9.3e-171 604.7 754 49.6
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 1.6e-170 604.0 747 48.2
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 2.7e-170 603.2 747 48.3
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 1.0e-169 601.3 741 48.9
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 3.9e-169 599.4 721 48.7
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 6.2e-167 592.0 721 48.5
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 9.0e-166 588.2 751 48.2
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 2.0e-165 587.0 740 48.9
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 3.8e-164 582.8 757 47.2
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 2.1e-162 577.0 783 46.6
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 3.9e-161 572.8 693 47.9
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 6.7e-161 572.0 749 46.6
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 3.3e-160 569.7 723 49.7
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 6.0e-154 548.9 744 47.0
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 2.5e-152 543.5 751 45.7
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 5.7e-152 542.3 740 46.1
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 3.7e-151 539.7 751 45.8
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 5.9e-149 532.3 735 46.0
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 7.6e-149 531.9 748 46.0
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 5.0e-148 529.3 755 46.1
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 7.2e-147 525.4 715 46.7
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 6.7e-145 518.8 735 46.1
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 1.1e-142 511.5 734 44.0
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 1.4e-142 511.1 737 45.7
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 1.8e-142 510.8 752 43.6
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 5.9e-141 505.8 674 48.1
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 1.7e-140 504.2 793 42.6
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 8.5e-140 501.9 721 44.8
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.4e-139 501.1 789 43.0
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.4e-139 501.1 789 43.0
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 1.8e-137 494.2 757 43.3
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 1.1e-134 485.0 654 44.5
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 4.1e-134 483.0 731 44.0
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 6.9e-134 482.3 834 41.4
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 4.5e-133 479.6 744 42.3
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 7.9e-130 468.8 692 45.5
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 1.5e-128 464.5 732 42.9
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 5.5e-123 446.0 707 42.9
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 4.0e-121 439.9 729 42.5
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 9.1e-118 428.7 599 45.6
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 6.8e-113 412.5 543 49.5
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 3.7e-111 406.8 301 71.4
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 1.6e-98 364.8 320 61.6
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 1.4e-97 361.7 759 35.6
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 3.7e-95 353.6 482 46.5
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 1.4e-86 325.1 515 42.7
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 1.2e-85 322.0 531 40.7
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 1.6e-82 311.6 239 69.0
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 6.8e-81 306.2 287 56.1
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 1.7e-79 301.6 360 51.7
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 2.5e-75 287.7 262 58.0
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 3.8e-55 220.7 275 45.8
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 1.2e-53 215.7 245 47.8
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 2.7e-45 188.0 318 42.1
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 5.6e-43 180.3 157 62.4
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 7.4e-43 179.9 158 61.4
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 2.9e-31 141.4 182 46.7
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 6.1e-29 133.7 98 66.3
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 7.7e-24 116.7 186 39.8
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 2.8e-18 98.2 83 60.2
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 7.0e-17 93.6 156 39.1
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 7.7e-16 90.1 84 50.0
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 2.3e-12 78.6 84 56.0
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 1.5e-11 75.9 74 50.0
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 1.7e-10 72.4 252 25.8
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 1.1e-06 59.7 137 29.9


User provided reference genes

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