Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 9.7e-141 503.4 248 100.0
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 1.1e-128 463.4 249 92.0
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 5.0e-113 411.4 248 81.0
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 1.3e-108 396.7 248 78.6
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.3e-108 396.7 248 78.6
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.3e-108 396.7 248 78.6
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.8e-108 394.8 248 78.6
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 4.1e-107 391.7 248 78.2
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.1e-107 391.7 248 78.2
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 1.2e-103 380.2 243 74.1
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 4.7e-103 378.3 242 74.4
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 3.0e-102 375.6 252 72.6
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 4.0e-102 375.2 250 72.0
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 3.4e-101 372.1 246 71.5
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.8e-100 368.2 295 65.1
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 1.4e-99 366.7 221 77.8
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 1.1e-96 357.1 229 74.7
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 1.1e-96 357.1 247 70.0
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 1.9e-96 356.3 206 80.6
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 2.5e-96 355.9 247 68.8
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 7.2e-96 354.4 236 69.5
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 2.1e-95 352.8 220 74.5
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 4.7e-95 351.7 249 70.3
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 6.1e-95 351.3 246 70.7
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 1.0e-94 350.5 220 75.5
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 1.4e-94 350.1 244 70.1
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 3.0e-94 349.0 211 78.7
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 1.5e-93 346.7 220 73.6
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 2.6e-93 345.9 244 68.0
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 4.4e-93 345.1 220 73.2
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 5.7e-93 344.7 220 73.2
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 7.5e-93 344.4 244 66.8
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 7.5e-93 344.4 227 70.0
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 9.8e-93 344.0 235 69.4
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 9.8e-93 344.0 200 80.0
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 1.7e-92 343.2 220 73.6
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 2.2e-92 342.8 244 68.4
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 2.2e-92 342.8 256 68.4
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 2.2e-92 342.8 256 68.4
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 3.7e-92 342.0 224 72.3
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 8.3e-92 340.9 201 78.6
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 1.1e-91 340.5 230 70.9
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 1.8e-91 339.7 208 75.0
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.4e-91 339.3 231 69.7
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 5.4e-91 338.2 230 69.6
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 5.4e-91 338.2 237 69.2
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 9.2e-91 337.4 244 65.6
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 9.2e-91 337.4 220 72.7
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 1.2e-90 337.0 230 70.0
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.2e-90 337.0 247 67.2
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 1.6e-90 336.7 207 74.9
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 1.6e-90 336.7 241 70.1
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.6e-90 336.7 257 65.0
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 3.5e-90 335.5 222 68.5
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 3.5e-90 335.5 245 66.5
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 3.5e-90 335.5 208 75.5
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 5.9e-90 334.7 210 73.3
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 5.9e-90 334.7 241 66.4
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.0e-89 334.0 219 70.8
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 1.0e-89 334.0 220 71.4
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 1.7e-89 333.2 241 66.0
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 2.3e-89 332.8 232 68.1
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 3.8e-89 332.0 246 65.4
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 6.6e-89 331.3 209 73.2
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 6.6e-89 331.3 255 63.1
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.1e-88 330.5 233 67.8
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 1.1e-88 330.5 238 68.1
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 1.1e-88 330.5 239 66.1
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 1.5e-88 330.1 244 64.8
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 1.5e-88 330.1 201 76.6
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 1.9e-88 329.7 244 63.5
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 2.5e-88 329.3 229 69.0
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 3.3e-88 328.9 231 68.0
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 6.1e-87 324.7 251 63.3
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.4e-86 323.6 261 63.2
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 3.1e-86 322.4 230 67.4
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 3.1e-86 322.4 240 65.8
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 5.2e-86 321.6 212 70.3
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 8.9e-86 320.9 212 69.8
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 1.2e-85 320.5 232 65.5
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 2.0e-85 319.7 212 69.3
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 2.6e-85 319.3 210 69.5
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 4.4e-85 318.5 210 69.0
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 4.4e-85 318.5 210 69.0
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 7.5e-85 317.8 230 65.7
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 7.5e-85 317.8 230 65.7
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 7.5e-85 317.8 240 64.2
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 9.8e-85 317.4 231 65.4
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 9.8e-85 317.4 232 65.5
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 1.3e-84 317.0 233 65.7
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 1.7e-84 316.6 217 67.7
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 1.7e-84 316.6 230 65.2
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 2.2e-84 316.2 249 60.6
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 2.2e-84 316.2 249 60.6
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 2.9e-84 315.8 204 70.6
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 6.4e-84 314.7 206 71.8
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 6.4e-84 314.7 248 62.1
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 8.3e-84 314.3 212 70.3
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 1.1e-83 313.9 201 71.1
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 2.4e-83 312.8 249 61.4
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 3.5e-82 308.9 247 61.5
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 8.0e-79 297.7 330 49.1
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 1.8e-78 296.6 243 63.8
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.4e-77 292.0 287 57.8
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 1.1e-75 287.3 172 75.6
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.9e-75 286.6 231 61.5
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 2.4e-75 286.2 227 60.8
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 6.4e-68 261.5 148 81.8
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 3.5e-66 255.8 316 45.9
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 3.0e-65 252.7 220 58.2
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 2.5e-64 249.6 136 84.6
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 2.4e-62 243.0 147 83.0
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 6.0e-58 228.4 218 54.1
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 7.3e-56 221.5 180 55.6
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 1.6e-55 220.3 248 48.8
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 3.1e-54 216.1 189 53.4
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 2.9e-52 209.5 145 66.9
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 3.2e-51 206.1 119 81.5
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 4.6e-50 202.2 192 46.9
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 2.9e-44 183.0 154 56.5
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 6.4e-44 181.8 190 42.6
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 5.4e-43 178.7 106 78.3
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 6.0e-42 175.3 247 42.1
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 7.9e-42 174.9 100 80.0
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 3.0e-41 172.9 169 51.5
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 2.5e-40 169.9 100 82.0
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 4.0e-38 162.5 127 61.4
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 5.3e-38 162.2 97 77.3
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 3.4e-37 159.5 100 76.0
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 2.4e-30 136.7 87 75.9
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 1.2e-29 134.4 99 61.6
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 2.2e-28 130.2 103 57.3
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 8.4e-28 128.3 84 66.7
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 1.6e-26 124.0 194 41.8
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 8.7e-25 118.2 100 54.0
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 9.7e-24 114.8 99 60.6
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 2.4e-22 110.2 203 30.5
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 9.0e-22 108.2 69 72.5
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 9.0e-22 108.2 72 70.8
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 9.0e-22 108.2 72 70.8
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 9.0e-22 108.2 72 70.8
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 9.0e-22 108.2 72 70.8
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 3.4e-21 106.3 71 70.4
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 2.2e-20 103.6 102 56.9
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 1.5e-16 90.9 182 29.7
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 1.4e-11 74.3 61 55.7
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 1.9e-11 73.9 117 28.2
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 4.2e-11 72.8 44 75.0
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 4.2e-11 72.8 44 75.0
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 7.2e-11 72.0 45 71.1
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 2.7e-10 70.1 108 37.0
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 1.0e-09 68.2 71 42.3
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 3.9e-09 66.2 40 77.5
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 5.1e-09 65.9 77 41.6
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 3.3e-08 63.2 40 72.5
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 5.7e-08 62.4 41 68.3
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 7.4e-08 62.0 55 56.4
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 2.8e-07 60.1 35 77.1
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 2.8e-07 60.1 35 77.1
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 3.1e-06 56.6 53 49.1
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 5.3e-06 55.8 41 53.7


User provided reference genes

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