Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 2.3e-134 482.6 327 100.0
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 1.6e-130 469.9 327 98.5
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 2.0e-125 453.0 327 94.5
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.5e-112 410.2 316 91.8
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 1.2e-111 407.1 327 86.2
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 4.0e-110 402.1 327 85.3
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 1.3e-108 397.1 327 84.4
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 8.3e-108 394.4 327 84.7
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 3.2e-107 392.5 327 83.5
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 9.2e-107 391.0 325 84.3
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 3.0e-105 386.0 325 82.5
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 3.0e-105 386.0 325 83.7
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 3.0e-105 386.0 326 82.2
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 6.6e-105 384.8 325 82.2
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 6.6e-105 384.8 325 84.0
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 5.6e-104 381.7 325 80.9
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 5.2e-102 375.2 325 83.1
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 8.9e-102 374.4 325 84.6
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 1.7e-100 370.2 327 80.4
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 2.2e-100 369.8 327 80.7
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 1.9e-99 366.7 325 80.0
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 2.4e-99 366.3 325 80.0
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 2.4e-99 366.3 325 80.0
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 2.7e-98 362.8 325 79.4
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 6.0e-98 361.7 315 83.8
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 2.5e-96 356.3 325 81.2
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 5.6e-96 355.1 325 81.8
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 3.1e-94 349.4 327 78.6
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 2.6e-93 346.3 327 79.2
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.3e-92 344.0 317 78.5
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.7e-92 343.6 317 78.5
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 2.9e-92 342.8 325 80.3
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 8.4e-92 341.3 325 77.8
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 3.9e-89 332.4 327 77.1
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 1.6e-87 327.0 327 78.3
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 2.8e-87 326.2 325 77.2
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 1.5e-85 320.5 325 77.5
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 7.6e-85 318.2 325 75.7
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 1.3e-84 317.4 328 75.3
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 1.4e-83 313.9 288 83.7
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 2.4e-83 313.2 325 76.3
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 5.4e-83 312.0 325 76.3
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 2.7e-82 309.7 324 76.2
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 3.5e-82 309.3 325 76.6
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 1.7e-81 307.0 325 75.4
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 1.9e-80 303.5 325 74.5
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.3e-79 300.8 261 91.6
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.6e-79 300.4 260 91.9
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 2.8e-79 299.7 261 91.2
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 3.6e-79 299.3 325 74.5
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 3.6e-79 299.3 275 80.7
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 4.8e-79 298.9 261 91.2
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 6.2e-79 298.5 314 76.1
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 1.1e-78 297.7 261 93.5
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 2.2e-76 290.0 325 73.8
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 2.3e-73 280.0 327 71.6
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 2.3e-73 280.0 327 71.6
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 1.5e-72 277.3 327 70.9
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 1.6e-71 273.9 259 86.9
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 3.7e-71 272.7 327 69.7
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 6.2e-71 271.9 325 70.5
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 3.1e-70 269.6 261 85.8
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 1.5e-69 267.3 259 85.3
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 2.0e-69 266.9 315 70.5
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 4.5e-69 265.8 257 86.4
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 4.5e-69 265.8 257 84.8
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 4.5e-69 265.8 261 84.3
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 1.3e-68 264.2 324 64.2
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 1.3e-68 264.2 257 86.0
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 1.3e-68 264.2 257 86.0
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 1.3e-68 264.2 262 82.8
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 1.7e-68 263.8 259 85.3
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 4.9e-68 262.3 260 83.5
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 8.4e-68 261.5 256 84.4
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 2.5e-67 260.0 260 83.1
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 5.5e-67 258.8 261 81.2
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 1.2e-66 257.7 252 86.9
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 1.6e-66 257.3 260 82.7
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 1.6e-66 257.3 260 82.7
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 1.6e-66 257.3 260 82.7
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 1.6e-66 257.3 260 82.7
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 1.6e-66 257.3 260 82.7
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 2.1e-66 256.9 259 82.6
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 6.0e-66 255.4 259 83.4
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 6.0e-66 255.4 258 84.1
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 1.3e-65 254.2 252 85.7
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 4.3e-64 249.2 252 83.7
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 9.6e-64 248.1 326 66.0
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 2.8e-63 246.5 151 78.1
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 4.8e-63 245.7 151 79.5
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 1.1e-62 244.6 151 77.5
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 1.8e-62 243.8 151 77.5
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 1.8e-62 243.8 151 77.5
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 2.4e-62 243.4 151 76.2
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 4.0e-62 242.7 151 76.8
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 4.0e-62 242.7 151 76.8
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 6.9e-62 241.9 151 77.5
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 6.9e-62 241.9 151 76.2
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 1.5e-61 240.7 340 55.6
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 3.4e-61 239.6 257 80.5
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 1.7e-60 237.3 153 72.5
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 2.2e-60 236.9 260 77.7
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 2.9e-60 236.5 153 73.2
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 5.0e-60 235.7 153 69.9
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 5.0e-60 235.7 153 70.6
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 7.1e-59 231.9 151 72.2
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 9.3e-59 231.5 151 72.2
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.2e-58 231.1 153 70.6
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.2e-58 231.1 153 70.6
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 2.7e-58 229.9 326 62.0
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 1.8e-57 227.3 152 70.4
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 1.9e-56 223.8 326 62.0
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 6.9e-54 215.3 209 83.3
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 1.0e-52 211.5 326 62.3
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 2.5e-51 206.8 313 64.9
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 7.7e-45 185.3 151 58.3
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 1.0e-44 184.9 317 56.2
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 1.3e-44 184.5 151 61.6
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 1.9e-43 180.6 314 58.6
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 4.2e-43 179.5 93 84.9
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 1.6e-42 177.6 123 67.5
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 3.9e-41 172.9 313 41.5
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 7.7e-37 158.7 114 66.7
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 4.7e-34 149.4 322 32.3
AUR62014277 Chenopodium quinoa HOM05D005280 ORTHO05D006253 3.1e-30 136.7 93 63.4
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 4.1e-30 136.3 331 47.7
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 3.8e-28 129.8 122 56.6
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 6.5e-28 129.0 322 29.2
MBI16_g13364_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.9e-12 77.0 87 46.0
MBI16_g04072_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 6.6e-12 75.9 87 50.6
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 2.5e-11 73.9 135 38.5
Hma1.2p1_1912F.1_g307330 Hydrangea macrophylla HOM05D019969 ORTHO05D019446 3.3e-11 73.6 77 51.9
Aqoxy1G02046 Aquilegia oxysepala HOM05D019969 ORTHO05D019446 4.2e-11 73.2 73 53.4
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 7.2e-11 72.4 111 42.3
MBI06_g08595_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.4e-09 68.2 88 40.9
MBI06_g08594_MAGBIO Magnolia biondii HOM05D038649 ORTHO05D006253 4.0e-09 66.6 76 43.4
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 8.9e-09 65.5 37 78.4
arahy.Tifrunner.gnm1.ann1.HIJE33 Arachis hypogaea HOM05D005280 ORTHO05D006253 1.5e-08 64.7 61 49.2
ATR0829G129 Amborella trichopoda HOM05D050206 ORTHO05D038281 8.3e-07 58.9 318 24.2
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 8.3e-07 58.9 36 72.2
Ca_20890_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 9.2e-06 55.5 92 35.9


User provided reference genes

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