Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 2.5e-116 422.2 219 100.0
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 3.2e-111 405.2 225 94.2
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 6.2e-99 364.4 223 86.5
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 4.6e-94 348.2 223 80.7
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.6e-93 344.0 226 79.6
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 1.1e-92 343.6 226 79.2
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.1e-92 343.6 226 79.6
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.1e-91 339.3 214 80.8
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.4e-89 332.0 225 77.3
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.4e-89 331.6 225 77.3
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.7e-88 329.7 219 77.2
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.2e-88 329.3 219 77.2
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 6.4e-88 327.8 220 75.9
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.9e-87 326.2 219 77.2
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 3.2e-87 325.5 218 76.1
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 3.2e-87 325.5 219 75.3
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 4.2e-87 325.1 218 76.1
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 9.3e-87 323.9 221 76.9
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.3e-85 320.1 218 75.7
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 1.7e-85 319.7 218 75.7
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 3.0e-85 318.9 216 75.5
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 3.0e-85 318.9 219 75.8
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 5.1e-85 318.2 216 75.9
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 6.6e-85 317.8 219 75.3
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 8.7e-85 317.4 224 73.2
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.1e-84 317.0 221 73.8
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 1.5e-84 316.6 225 73.3
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 3.3e-84 315.5 221 73.3
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 4.3e-84 315.1 217 76.5
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 5.6e-84 314.7 216 74.1
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 7.3e-84 314.3 223 74.4
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 7.3e-84 314.3 224 71.4
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 9.6e-84 313.9 215 74.0
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 1.3e-83 313.5 218 73.9
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 1.3e-83 313.5 222 72.5
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.3e-83 313.5 221 76.5
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 1.6e-83 313.2 225 73.8
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.6e-83 313.2 219 74.0
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 2.1e-83 312.8 221 74.2
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 2.8e-83 312.4 225 72.9
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 8.1e-83 310.8 222 73.0
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 1.1e-82 310.5 220 73.6
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.1e-82 310.5 213 72.3
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 1.4e-82 310.1 217 73.3
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 2.4e-82 309.3 225 71.1
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 2.4e-82 309.3 215 74.0
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 6.9e-82 307.8 214 73.8
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 9.0e-82 307.4 275 62.9
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.2e-81 307.0 219 71.2
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 1.5e-81 306.6 222 70.7
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 2.0e-81 306.2 241 67.6
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 2.6e-81 305.8 222 69.4
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 2.6e-81 305.8 222 70.7
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 3.4e-81 305.4 220 72.3
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 7.6e-81 304.3 221 70.1
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 9.9e-81 303.9 221 70.6
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 1.3e-80 303.5 217 71.9
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 1.7e-80 303.1 218 72.0
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 1.7e-80 303.1 226 69.5
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.7e-80 303.1 219 70.8
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 2.9e-80 302.4 221 70.6
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 3.8e-80 302.0 215 72.6
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 6.4e-80 301.2 218 71.1
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 8.4e-80 300.8 213 72.8
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 8.4e-80 300.8 228 69.7
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 8.4e-80 300.8 227 67.8
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 8.4e-80 300.8 220 70.5
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 1.1e-79 300.4 219 71.7
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 1.4e-79 300.1 209 73.7
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 1.4e-79 300.1 221 69.7
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.9e-79 299.7 220 69.5
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.9e-79 299.7 221 69.7
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 2.4e-79 299.3 225 68.4
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 3.2e-79 298.9 217 71.0
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 3.2e-79 298.9 222 69.8
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 4.2e-79 298.5 217 69.6
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 5.4e-79 298.1 225 68.9
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 5.4e-79 298.1 219 69.9
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 7.1e-79 297.7 217 69.1
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 7.1e-79 297.7 215 71.2
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 9.3e-79 297.4 216 71.3
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.6e-78 296.6 213 70.9
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 2.1e-78 296.2 203 75.4
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 2.1e-78 296.2 212 69.8
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 4.6e-78 295.0 221 69.2
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 6.0e-78 294.7 219 70.3
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 6.0e-78 294.7 206 73.3
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 1.3e-77 293.5 215 70.7
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 2.3e-77 292.7 209 71.3
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 2.3e-77 292.7 217 68.7
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 2.3e-77 292.7 217 68.7
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 2.3e-77 292.7 242 65.3
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 2.3e-77 292.7 210 71.9
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 3.0e-77 292.4 206 73.3
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 5.1e-77 291.6 215 69.3
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 8.7e-77 290.8 215 69.8
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 1.5e-76 290.0 217 69.6
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 1.9e-76 289.7 220 70.0
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 3.3e-76 288.9 220 67.7
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 3.3e-76 288.9 220 69.1
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 9.6e-76 287.3 215 68.8
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.3e-75 287.0 218 66.5
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 2.1e-75 286.2 221 67.0
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 4.8e-75 285.0 248 62.5
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 1.1e-74 283.9 220 67.3
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.0e-74 282.0 211 68.2
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 3.4e-73 278.9 226 66.4
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 1.3e-72 276.9 222 63.1
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 2.2e-72 276.2 224 61.2
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.4e-71 273.5 160 86.2
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.9e-71 273.1 311 49.5
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 1.2e-70 270.4 242 61.2
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 1.2e-70 270.4 218 68.3
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 2.7e-70 269.2 223 65.5
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 7.9e-70 267.7 211 66.8
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 1.8e-69 266.5 220 63.2
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 2.3e-69 266.2 167 80.2
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 3.7e-67 258.8 219 64.4
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 4.8e-67 258.5 219 63.5
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 2.6e-65 252.7 170 75.9
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 2.6e-65 252.7 197 64.5
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.9e-64 249.2 220 59.5
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 2.5e-63 246.1 224 62.9
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 4.2e-63 245.4 200 68.5
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 7.1e-63 244.6 227 60.8
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 3.9e-61 238.8 233 54.5
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 5.1e-61 238.4 222 60.8
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 3.3e-60 235.7 210 60.5
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 3.3e-60 235.7 169 74.0
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 1.1e-58 230.7 227 56.4
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 1.7e-56 223.4 173 59.0
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 2.2e-56 223.0 216 57.4
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 1.1e-55 220.7 214 52.8
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 3.2e-55 219.2 131 80.2
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.5e-52 210.3 177 61.6
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 1.9e-52 209.9 245 45.7
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 4.3e-52 208.8 158 67.7
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 1.3e-51 207.2 130 76.2
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 2.8e-51 206.1 145 76.6
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.1e-50 204.1 117 82.9
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 1.1e-47 194.1 162 64.8
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 1.8e-45 186.8 103 83.5
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.5e-44 183.7 120 70.0
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 8.2e-43 177.9 217 46.1
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 2.6e-41 172.9 213 47.4
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 7.7e-41 171.4 172 57.6
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 3.2e-39 166.0 144 65.3
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.6e-36 156.4 123 70.7
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 9.7e-36 154.5 303 36.0
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 9.7e-36 154.5 188 51.6
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 4.1e-34 149.1 161 55.3
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 3.5e-33 146.0 186 44.6
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 5.0e-32 142.1 81 87.7
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 3.3e-28 129.4 75 88.0
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 5.5e-23 112.1 84 71.4
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 9.4e-23 111.3 147 49.7
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 6.1e-22 108.6 68 75.0
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 2.3e-21 106.7 113 53.1
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 4.4e-20 102.4 81 61.7
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 9.8e-20 101.3 59 81.4
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 1.7e-19 100.5 89 60.7
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 2.2e-19 100.1 67 71.6
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 3.1e-18 96.3 89 58.4
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 9.1e-18 94.7 170 36.5
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.7e-16 90.5 100 56.0
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.2e-16 90.1 239 31.8
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.2e-14 84.3 91 52.7
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 4.7e-14 82.4 137 38.7
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 1.3e-11 74.3 158 38.6
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 5.4e-10 68.9 42 76.2
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 5.4e-10 68.9 63 55.6
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 1.7e-08 63.9 52 63.5
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 3.3e-07 59.7 43 69.8
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.2e-06 57.8 34 70.6


User provided reference genes

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