Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 1.6e-112 409.5 210 100.0
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 1.0e-95 353.6 210 86.2
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.9e-81 306.2 214 74.3
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.5e-81 305.8 209 75.1
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.5e-81 305.8 210 74.8
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 5.6e-81 304.7 214 74.3
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 7.3e-81 304.3 209 74.6
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 7.3e-81 304.3 217 74.7
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 9.5e-81 303.9 209 74.2
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 2.1e-80 302.8 211 73.0
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 2.1e-80 302.8 212 74.1
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 2.1e-80 302.8 211 73.5
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 2.8e-80 302.4 210 74.8
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 3.6e-80 302.0 207 74.4
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 1.1e-79 300.4 216 73.6
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.4e-79 300.1 211 73.0
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 1.8e-79 299.7 217 73.3
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 1.8e-79 299.7 211 73.9
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 2.3e-79 299.3 211 72.5
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 2.3e-79 299.3 210 73.8
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 4.0e-79 298.5 209 73.2
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 4.0e-79 298.5 211 72.0
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 4.0e-79 298.5 211 73.0
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 8.9e-79 297.4 217 71.9
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 8.9e-79 297.4 212 72.2
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 8.9e-79 297.4 211 73.5
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 1.5e-78 296.6 211 72.0
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 1.5e-78 296.6 212 71.7
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 2.6e-78 295.8 208 73.6
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 4.4e-78 295.0 210 71.9
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 4.4e-78 295.0 210 72.9
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 7.5e-78 294.3 209 72.7
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 9.8e-78 293.9 211 72.5
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 9.8e-78 293.9 214 70.6
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 9.8e-78 293.9 211 71.1
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 9.8e-78 293.9 206 74.3
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 1.3e-77 293.5 207 72.5
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 1.7e-77 293.1 211 70.1
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 2.2e-77 292.7 209 73.2
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 2.2e-77 292.7 209 70.3
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 3.7e-77 292.0 239 65.3
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 3.7e-77 292.0 216 71.8
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 3.7e-77 292.0 210 71.0
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 3.7e-77 292.0 209 72.2
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 4.9e-77 291.6 217 69.1
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 1.1e-76 290.4 209 69.9
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 1.4e-76 290.0 209 70.8
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.9e-76 289.7 216 72.2
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 1.9e-76 289.7 211 69.2
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 2.4e-76 289.3 211 68.7
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 2.4e-76 289.3 214 70.6
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 2.4e-76 289.3 211 71.6
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 2.4e-76 289.3 211 68.7
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 3.2e-76 288.9 209 71.3
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 4.1e-76 288.5 211 70.1
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 4.1e-76 288.5 209 71.3
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 5.4e-76 288.1 212 69.8
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 5.4e-76 288.1 213 70.4
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 5.4e-76 288.1 211 70.1
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.6e-75 286.6 208 70.2
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 2.1e-75 286.2 208 71.6
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 2.1e-75 286.2 254 61.8
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 2.7e-75 285.8 210 70.5
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 3.5e-75 285.4 210 70.0
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 6.0e-75 284.6 213 70.4
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 6.0e-75 284.6 210 68.1
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 1.0e-74 283.9 215 64.7
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 1.0e-74 283.9 215 64.7
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 1.0e-74 283.9 215 64.7
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 1.0e-74 283.9 219 66.7
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 1.0e-74 283.9 207 70.5
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 1.3e-74 283.5 215 66.0
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.3e-74 283.5 213 71.8
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 1.3e-74 283.5 212 71.2
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.7e-74 283.1 216 70.8
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 5.1e-74 281.6 211 67.8
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 5.1e-74 281.6 210 69.5
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 1.5e-73 280.0 211 66.4
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 1.9e-73 279.6 215 64.2
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 1.9e-73 279.6 215 64.2
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.5e-73 279.3 212 68.9
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 3.3e-73 278.9 222 65.3
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 4.3e-73 278.5 211 65.9
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 5.6e-73 278.1 214 65.4
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 7.3e-73 277.7 214 65.4
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 9.5e-73 277.3 212 67.5
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 3.6e-72 275.4 215 64.7
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 3.6e-72 275.4 212 67.5
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 8.1e-72 274.2 218 65.6
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.4e-71 273.5 223 64.1
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 6.8e-71 271.2 213 63.4
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 8.9e-71 270.8 227 62.6
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 1.2e-70 270.4 236 63.1
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 1.5e-70 270.0 212 67.5
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 7.5e-70 267.7 211 64.5
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 1.3e-69 266.9 212 66.0
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 2.9e-69 265.8 212 65.6
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 4.9e-69 265.0 225 62.2
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 6.4e-69 264.6 209 62.7
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 6.4e-69 264.6 207 61.4
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 3.5e-67 258.8 243 58.4
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 6.0e-67 258.1 206 67.0
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 1.3e-66 256.9 250 59.2
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 2.3e-66 256.1 212 60.8
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 3.0e-66 255.8 212 60.8
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 1.9e-65 253.1 216 58.8
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 5.6e-65 251.5 207 62.8
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 4.7e-64 248.4 214 60.7
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 1.4e-63 246.9 148 78.4
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 1.8e-63 246.5 183 67.2
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 4.0e-63 245.4 172 69.2
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 9.9e-62 240.7 213 60.6
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 2.3e-58 229.6 170 68.2
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.3e-56 223.8 208 55.8
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 2.8e-56 222.6 235 52.8
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 1.4e-55 220.3 192 62.5
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 1.8e-55 219.9 219 53.4
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.9e-49 199.9 126 73.8
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 5.6e-49 198.4 245 46.9
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 1.3e-48 197.2 231 48.1
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 2.6e-46 189.5 114 78.9
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 5.8e-46 188.3 210 49.5
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 3.2e-44 182.6 215 51.6
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 3.0e-42 176.0 106 79.2
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 7.6e-38 161.4 170 48.8
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 7.9e-35 151.4 251 34.3
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.0e-34 151.0 100 72.0
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 5.1e-26 122.1 173 43.9
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 1.5e-25 120.6 239 36.8
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 7.9e-11 71.6 85 52.9
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 3.3e-09 66.2 35 85.7
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 3.3e-09 66.2 42 71.4
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.1e-07 61.2 43 65.1
Cpa.g.sc246.8 Carica papaya HOM05D005618 ORTHO05D118306 1.5e-06 57.4 37 78.4
QL10p020720 Quercus lobata HOM05D005618 ORTHO05D337099 1.5e-06 57.4 37 78.4
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 2.6e-06 56.6 204 27.0


User provided reference genes

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