Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1283100 Malus domestica HOM05D007598 ORTHO05D009632 1.2e-43 179.5 95 100.0
MD10G1261400 Malus domestica HOM05D007598 ORTHO05D009632 2.3e-34 148.7 95 84.2
Prupe.4G081500 Prunus persica HOM05D007598 ORTHO05D009632 1.2e-27 126.3 96 76.0
RcHm_v2.0_Chr5g0014281 Rosa chinensis HOM05D007598 ORTHO05D009632 2.8e-24 115.2 83 75.9
CiPaw.10G091200 Carya illinoinensis HOM05D007598 ORTHO05D009632 1.3e-21 106.3 96 66.7
AUR62030196 Chenopodium quinoa HOM05D007598 ORTHO05D009632 1.3e-21 106.3 63 77.8
Atru.chr10.1775 Acer truncatum HOM05D007598 ORTHO05D009632 1.7e-21 105.9 62 85.5
AUR62002748 Chenopodium quinoa HOM05D007598 ORTHO05D009632 3.8e-21 104.8 63 76.2
Manes.17G070801 Manihot esculenta HOM05D007598 ORTHO05D009632 6.5e-21 104.0 96 61.5
FAN11G3574 Fragaria x ananassa HOM05D007598 ORTHO05D009632 1.1e-20 103.2 81 69.1
Medtr2g019240 Medicago truncatula HOM05D007598 ORTHO05D009632 1.5e-20 102.8 64 76.6
QL05p057697 Quercus lobata HOM05D007598 ORTHO05D009632 1.5e-20 102.8 95 58.9
Cpa.g.sc170.27 Carica papaya HOM05D007598 ORTHO05D009632 4.2e-20 101.3 61 77.0
FvH4_3g05470 Fragaria vesca HOM05D007598 ORTHO05D009632 5.5e-20 100.9 85 67.1
Psat1g188680 Pisum sativum HOM05D007598 ORTHO05D009632 5.5e-20 100.9 81 66.7
Cfa000936 Carpinus fangiana HOM05D007598 ORTHO05D009632 7.2e-20 100.5 95 64.2
Rhsim02G0159000 Rhododendron simsii HOM05D007598 ORTHO05D009632 1.2e-19 99.8 62 72.6
Ca_00537_v3 Cicer arietinum L. HOM05D007598 ORTHO05D009632 1.6e-19 99.4 61 78.7
MELO3C007128.2 Cucumis melo HOM05D007598 ORTHO05D009632 1.6e-19 99.4 95 63.2
DCAR_027909 Daucus carota HOM05D007598 ORTHO05D009632 1.6e-19 99.4 63 76.2
Actinidia07703 Actinidia chinensis HOM05D007598 ORTHO05D009632 2.1e-19 99.0 84 64.3
FAN16G2639 Fragaria x ananassa HOM05D007598 ORTHO05D009632 2.1e-19 99.0 66 77.3
FAN21G2813 Fragaria x ananassa HOM05D007598 ORTHO05D009632 2.1e-19 99.0 66 77.3
ClCG01G024670 Citrullus lanatus HOM05D007598 ORTHO05D009632 2.7e-19 98.6 60 83.3
Phvul.006G165400 Phaseolus vulgaris HOM05D007598 ORTHO05D009632 2.7e-19 98.6 68 72.1
CSS0035986 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 4.7e-19 97.8 67 76.1
FAN25G0892 Fragaria x ananassa HOM05D007598 ORTHO05D009632 4.7e-19 97.8 76 71.1
CsaV3_6G051780 Cucumis sativus L. HOM05D007598 ORTHO05D009632 6.1e-19 97.4 95 62.1
Sed0007826 Sechium edule HOM05D007598 ORTHO05D009632 6.1e-19 97.4 63 77.8
Aa31LG10G6810 Aethionema arabicum HOM05D007598 ORTHO05D009632 8.0e-19 97.1 69 71.0
Glyma.13G218700 Glycine max HOM05D007598 ORTHO05D009632 8.0e-19 97.1 65 73.8
CSS0006536 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 1.0e-18 96.7 64 78.1
Glyma.15G093500 Glycine max HOM05D007598 ORTHO05D009632 1.0e-18 96.7 61 77.0
Lj6g0001552 Lotus japonicus HOM05D007598 ORTHO05D009632 1.4e-18 96.3 95 60.0
Dinv32243 Davidia involucrata HOM05D007598 ORTHO05D009632 1.8e-18 95.9 73 68.5
Gohir.D10G042400 Gossypium hirsutum HOM05D007598 ORTHO05D009632 1.8e-18 95.9 61 77.0
Potri.011G084300 Populus trichocarpa HOM05D007598 ORTHO05D009632 1.8e-18 95.9 62 74.2
AT2G34585 Arabidopsis thaliana HOM05D007598 ORTHO05D009632 2.3e-18 95.5 63 74.6
Nn3g20182 Nelumbo nucifera HOM05D007598 ORTHO05D009632 2.3e-18 95.5 61 75.4
Nitab4.5_0000420g0040 Nicotiana tabacum HOM05D007598 ORTHO05D009632 2.3e-18 95.5 61 73.8
Lalb_Chr20g0117881 Lupinus albus HOM05D007598 ORTHO05D009632 4.0e-18 94.7 61 75.4
Thecc.06G149600 Theobroma cacao HOM05D007598 ORTHO05D009632 4.0e-18 94.7 95 61.1
Sabra11G0066800 Salix brachista HOM05D007598 ORTHO05D009632 5.2e-18 94.4 95 57.9
Actinidia39580 Actinidia chinensis HOM05D007598 ORTHO05D009632 6.8e-18 94.0 88 61.4
Duzib235G0096 Durio zibethinus HOM05D007598 ORTHO05D009632 6.8e-18 94.0 63 76.2
Thhalv10017600m.g Eutrema salsugineum HOM05D007598 ORTHO05D009632 6.8e-18 94.0 70 68.6
Nitab4.5_0006887g0010 Nicotiana tabacum HOM05D007598 ORTHO05D009632 6.8e-18 94.0 61 72.1
CANSAT35G0825 Cannabis sativa HOM05D007598 ORTHO05D009632 1.2e-17 93.2 96 57.3
CAN.G702.32 Capsicum annuum HOM05D007598 ORTHO05D009632 1.2e-17 93.2 61 72.1
arahy.Tifrunner.gnm1.ann1.A3G0A3 Arachis hypogaea HOM05D007598 ORTHO05D009632 2.0e-17 92.4 61 75.4
arahy.Tifrunner.gnm1.ann1.KTXA2U Arachis hypogaea HOM05D007598 ORTHO05D009632 2.0e-17 92.4 61 75.4
PSO541G2526 Papaver somniferum HOM05D007598 ORTHO05D009632 2.0e-17 92.4 81 59.3
TWI53G0871 Tripterygium wilfordii HOM05D007598 ORTHO05D009632 2.0e-17 92.4 95 57.9
AL4G30560 Arabidopsis lyrata HOM05D007598 ORTHO05D009632 2.6e-17 92.0 81 61.7
Cc00_g10360 Coffea canephora HOM05D007598 ORTHO05D009632 2.6e-17 92.0 64 71.9
HanXRQChr04g0114301 Helianthus annuus HOM05D007598 ORTHO05D009632 2.6e-17 92.0 61 73.8
SalBow8G5536 Salvia bowleyana HOM05D007598 ORTHO05D009632 2.6e-17 92.0 62 72.6
THA.LOC104820651 Tarenaya hassleriana HOM05D007598 ORTHO05D009632 2.6e-17 92.0 98 59.2
BcaB06g28784 Brassica carinata HOM05D007598 ORTHO05D009632 3.4e-17 91.7 84 63.1
Carub.0004s1626 Capsella rubella HOM05D007598 ORTHO05D009632 3.4e-17 91.7 88 59.1
PGR042G1521 Punica granatum HOM05D007598 ORTHO05D009632 4.4e-17 91.3 86 59.3
PGSC0003DMG400021093 Solanum tuberosum HOM05D007598 ORTHO05D009632 4.4e-17 91.3 63 71.4
A04p26490 Brassica napus HOM05D007598 ORTHO05D009632 5.7e-17 90.9 85 62.4
C04p63910 Brassica napus HOM05D007598 ORTHO05D009632 5.7e-17 90.9 85 62.4
BolC4t27858H Brassica oleracea HOM05D007598 ORTHO05D009632 5.7e-17 90.9 85 62.4
BraA04t18153Z Brassica rapa HOM05D007598 ORTHO05D009632 5.7e-17 90.9 85 62.4
CARHR128680 Cardamine hirsuta HOM05D007598 ORTHO05D009632 5.7e-17 90.9 64 70.3
Ah.14g086510 Amaranthus hybridus HOM05D007598 ORTHO05D009632 7.5e-17 90.5 60 71.7
HanXRQChr15g0480881 Helianthus annuus HOM05D007598 ORTHO05D009632 7.5e-17 90.5 60 75.0
Lsat_1_v5_gn_7_28481 Lactuca sativa HOM05D007598 ORTHO05D009632 7.5e-17 90.5 61 73.8
Nitab4.5_0002744g0030 Nicotiana tabacum HOM05D007598 ORTHO05D009632 7.5e-17 90.5 60 75.0
Sc05g0006160 Simmondsia chinensis HOM05D007598 ORTHO05D009632 7.5e-17 90.5 61 68.9
Aqoxy7G00246 Aquilegia oxysepala HOM05D007598 ORTHO05D009632 1.3e-16 89.7 61 72.1
Migut.M01992 Erythranthe guttata HOM05D007598 ORTHO05D009632 2.2e-16 89.0 65 67.7
TAR626G0451 Trochodendron aralioides HOM05D007598 ORTHO05D009632 3.7e-16 88.2 62 69.4
Migut.M00903 Erythranthe guttata HOM05D007598 ORTHO05D009632 4.8e-16 87.8 65 66.2
Sp4g16850 Schrenkiella parvula HOM05D007598 ORTHO05D009632 4.8e-16 87.8 84 60.7
EL10Ac8g19673 Beta vulgaris HOM05D007598 ORTHO05D009632 6.3e-16 87.4 76 57.9
Solyc02g070470.1 Solanum lycopersicum HOM05D007598 ORTHO05D009632 8.3e-16 87.0 83 59.0
Sopen02g019560 Solanum pennellii HOM05D007598 ORTHO05D009632 1.1e-15 86.7 83 59.0
Ciclev10017916m.g Citrus clementina HOM05D007598 ORTHO05D009632 1.8e-15 85.9 62 71.0
Rhsim13G0114100 Rhododendron simsii HOM05D007598 ORTHO05D009632 4.1e-15 84.7 78 56.4
MBI02_g15148_MAGBIO Magnolia biondii HOM05D007598 ORTHO05D009632 5.4e-15 84.3 60 68.3
ECA236G0778 Erigeron canadensis HOM05D007598 ORTHO05D009632 1.2e-14 83.2 46 82.6
HPP92_000988 Vanilla planifolia HOM05D007598 ORTHO05D009632 1.2e-14 83.2 64 65.6
unitig_749.g13736 Utricularia gibba HOM05D007598 ORTHO05D009632 2.0e-14 82.4 59 67.8
ATR1098G093 Amborella trichopoda HOM05D007598 ORTHO05D009632 2.7e-14 82.0 78 57.7
COL.COLO4_31062 Corchorus olitorius HOM05D007598 ORTHO05D009632 4.5e-14 81.3 46 80.4
PGSC0003DMG400012092 Solanum tuberosum HOM05D007598 ORTHO05D009632 1.7e-13 79.3 48 77.1
SEGI_36626 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 2.5e-12 75.5 51 62.7
Os07g0154300 Oryza sativa ssp. japonica HOM05D007598 ORTHO05D009632 1.2e-11 73.2 80 51.2
Mapoly0055s0099 Marchantia polymorpha HOM05D007598 ORTHO05D009632 4.7e-11 71.2 48 62.5
Zm00001eb117510 Zea mays HOM05D007598 ORTHO05D009632 6.1e-11 70.9 82 51.2
Pp3c14_11250 Physcomitrium patens HOM05D007598 ORTHO05D009632 1.8e-10 69.3 89 41.6
Actinidia16706 Actinidia chinensis HOM05D000667 ORTHO05D004096 2.8e-08 62.0 53 58.5


User provided reference genes

Program Settings