Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 5.5e-186 654.1 309 100.0
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 4.5e-156 554.7 309 85.8
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 3.3e-146 521.9 310 81.9
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 1.4e-144 516.5 309 79.9
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 2.2e-142 509.2 309 79.3
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 9.2e-141 503.8 309 78.3
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 3.4e-135 485.3 318 74.5
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 1.0e-131 473.8 320 73.8
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 2.5e-130 469.2 320 71.9
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 4.3e-130 468.4 320 72.2
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 7.3e-130 467.6 315 72.4
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 9.6e-130 467.2 315 72.1
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.2e-129 466.8 315 72.7
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 2.9e-126 455.7 266 82.7
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 3.8e-126 455.3 317 71.6
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 7.1e-125 451.1 316 69.9
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 1.6e-124 449.9 331 67.4
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 1.6e-124 449.9 316 69.9
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 6.0e-124 448.0 313 70.9
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 7.8e-124 447.6 317 68.1
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 1.0e-123 447.2 353 65.4
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.7e-123 446.4 314 70.4
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.1e-122 443.7 314 68.8
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 7.3e-122 441.0 316 68.0
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 2.8e-121 439.1 315 67.6
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 2.8e-121 439.1 320 68.4
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 4.8e-121 438.3 320 66.6
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 1.4e-120 436.8 321 68.8
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 5.3e-120 434.9 318 66.4
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 6.9e-120 434.5 319 67.7
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 2.6e-119 432.6 319 67.1
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 5.8e-119 431.4 316 67.7
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 9.9e-119 430.6 311 66.9
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 2.9e-118 429.1 311 68.5
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 4.9e-118 428.3 311 66.9
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 3.2e-117 425.6 318 65.4
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 1.6e-116 423.3 314 65.3
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.6e-116 423.3 309 68.9
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 2.7e-116 422.5 320 64.7
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 2.7e-116 422.5 317 63.7
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 6.0e-116 421.4 314 66.9
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 7.9e-116 421.0 311 66.6
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 1.7e-115 419.9 318 66.4
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 1.3e-113 413.7 316 65.5
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 2.1e-113 412.9 313 64.9
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 6.2e-113 411.4 322 64.9
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 8.1e-113 411.0 315 65.4
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 1.4e-112 410.2 316 65.5
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 2.4e-112 409.5 314 64.6
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 3.1e-112 409.1 310 64.2
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 3.1e-112 409.1 322 64.6
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 1.5e-111 406.8 324 63.9
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 2.0e-111 406.4 314 65.0
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 2.6e-111 406.0 311 64.0
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 5.8e-111 404.8 314 62.1
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 9.9e-111 404.1 311 64.0
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 9.9e-111 404.1 325 63.7
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 2.9e-110 402.5 310 64.2
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 2.9e-110 402.5 314 63.1
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 6.4e-110 401.4 311 63.0
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 1.4e-109 400.2 310 64.2
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 1.9e-109 399.8 320 64.4
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 2.4e-109 399.4 315 63.8
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 5.4e-109 398.3 310 63.5
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 9.3e-109 397.5 311 64.0
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 9.3e-109 397.5 310 63.5
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 9.3e-109 397.5 317 62.8
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 2.1e-108 396.4 310 63.2
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 2.7e-108 396.0 317 62.8
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 4.6e-108 395.2 314 63.4
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 1.3e-107 393.7 312 64.1
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 1.8e-107 393.3 313 62.9
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 1.1e-106 390.6 315 62.5
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 1.3e-105 387.1 360 56.7
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 4.8e-105 385.2 289 64.0
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 1.4e-104 383.6 311 61.7
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 3.1e-104 382.5 327 58.7
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 4.0e-104 382.1 326 60.1
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 1.5e-103 380.2 315 61.6
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 1.7e-102 376.7 323 59.1
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 4.2e-101 372.1 311 60.5
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 8.7e-99 364.4 249 70.7
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 7.4e-98 361.3 237 75.9
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 1.2e-95 354.0 318 59.1
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.0e-94 350.9 317 58.4
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 6.5e-94 348.2 332 57.5
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 8.4e-94 347.8 234 70.9
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 1.4e-93 347.1 320 57.8
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 6.1e-92 341.7 329 54.1
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 1.8e-91 340.1 259 66.4
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 6.7e-91 338.2 327 54.7
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 5.7e-90 335.1 236 70.8
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 2.0e-87 326.6 311 56.6
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 2.8e-81 306.2 231 64.9
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 9.1e-80 301.2 321 51.7
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 1.5e-79 300.4 314 53.5
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 5.9e-79 298.5 316 49.7
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 1.7e-78 297.0 309 50.2
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 1.2e-76 290.8 310 53.2
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 2.1e-76 290.0 306 49.0
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 6.1e-76 288.5 210 67.6
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 4.4e-74 282.3 313 49.2
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 5.7e-74 282.0 248 60.1
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 2.8e-73 279.6 250 54.8
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 6.3e-73 278.5 197 68.5
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 1.6e-71 273.9 246 54.1
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 3.0e-67 259.6 225 56.9
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.7e-65 253.8 177 73.4
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 4.2e-61 239.2 173 67.1
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 8.8e-59 231.5 174 71.3
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 5.7e-58 228.8 242 54.5
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 3.6e-52 209.5 312 40.4
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 4.9e-49 199.1 128 73.4
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 6.3e-49 198.7 227 47.1
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 8.3e-49 198.4 142 65.5
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 1.0e-43 181.4 149 58.4
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 1.1e-40 171.4 143 64.3
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 1.4e-40 171.0 461 29.1
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 2.4e-40 170.2 239 42.3
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 2.4e-40 170.2 320 35.0
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 9.8e-34 148.3 236 37.7
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 7.0e-32 142.1 109 67.9
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 4.0e-27 126.3 168 45.8
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 8.1e-20 102.1 61 78.7
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 3.1e-19 100.1 67 62.7
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 3.5e-15 86.7 54 70.4
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 1.3e-14 84.7 59 67.8
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 2.5e-13 80.5 45 75.6
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 8.1e-12 75.5 51 68.6
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 4.0e-11 73.2 40 72.5
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 2.9e-09 67.0 31 93.5
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 4.2e-08 63.2 31 90.3
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.6e-07 61.2 36 69.4
MCO01G569 Micromonas commoda HOM05D005657 ORTHO05D007104 6.0e-07 59.3 43 62.8


User provided reference genes

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