Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 3.7e-310 1067.4 549 100.0
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 1.2e-276 956.1 551 89.8
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 1.6e-252 875.9 545 81.8
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 6.3e-217 757.7 549 72.3
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 8.2e-217 757.3 549 72.7
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.8e-216 756.1 549 72.7
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 7.0e-216 754.2 549 72.1
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 3.4e-215 751.9 549 71.8
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.9e-214 748.8 549 71.8
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 1.8e-200 703.0 552 68.1
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 3.0e-195 685.6 550 65.5
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 4.1e-192 675.2 554 64.8
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 5.5e-189 664.8 557 65.7
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 4.4e-186 655.2 688 55.4
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 7.8e-183 644.4 551 62.8
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.5e-181 640.2 549 61.2
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 2.5e-181 639.4 548 62.6
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 2.1e-180 636.3 550 62.2
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 6.8e-179 631.3 547 62.0
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 8.9e-179 630.9 548 63.7
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 3.4e-178 629.0 559 61.5
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.7e-177 626.7 555 59.6
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 4.9e-177 625.2 546 61.4
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 1.1e-176 624.0 552 62.0
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 2.7e-175 619.4 549 63.4
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 4.6e-175 618.6 554 60.5
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 3.0e-174 615.9 547 61.4
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 8.6e-174 614.4 554 59.9
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 7.3e-173 611.3 531 60.5
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.4e-171 607.1 547 62.2
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 5.2e-171 605.1 529 60.5
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 3.4e-170 602.4 569 60.3
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 3.2e-168 595.9 555 58.6
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 1.3e-166 590.5 541 59.3
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 6.6e-166 588.2 544 59.2
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 8.6e-166 587.8 549 59.4
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 7.3e-165 584.7 553 58.0
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 3.1e-163 579.3 572 56.5
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 3.1e-163 579.3 550 58.9
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 5.2e-163 578.6 550 58.4
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 6.8e-163 578.2 548 56.9
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 6.8e-163 578.2 540 60.0
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 8.9e-163 577.8 552 57.2
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 3.4e-162 575.9 552 57.4
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 9.9e-162 574.3 554 58.3
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 2.9e-161 572.8 552 56.5
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.4e-160 570.5 552 56.9
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 7.1e-160 568.2 465 62.8
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 1.1e-157 560.8 541 56.9
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 7.3e-157 558.1 546 56.4
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 8.9e-155 551.2 547 57.8
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 3.4e-154 549.3 548 58.2
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 1.7e-153 547.0 517 58.4
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 4.9e-153 545.4 559 55.6
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 4.9e-153 545.4 547 58.0
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 1.1e-152 544.3 555 56.8
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 1.9e-152 543.5 558 55.6
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 5.4e-152 542.0 550 56.2
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 1.6e-151 540.4 547 57.6
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 5.1e-150 535.4 550 54.4
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 5.1e-150 535.4 558 55.2
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 1.1e-149 534.3 555 54.6
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 1.9e-149 533.5 550 54.5
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 4.3e-149 532.3 550 55.3
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 1.4e-147 527.3 550 54.2
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 3.1e-147 526.2 550 53.6
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 4.0e-147 525.8 542 55.7
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 5.3e-147 525.4 541 54.3
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 2.6e-146 523.1 553 53.3
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 5.8e-146 521.9 558 52.7
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 1.9e-144 516.9 538 53.0
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 1.6e-143 513.8 550 52.5
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 7.8e-143 511.5 551 53.5
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 7.8e-143 511.5 587 49.2
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 1.7e-142 510.4 551 53.5
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 2.3e-142 510.0 550 53.3
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 2.3e-142 510.0 550 52.0
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 1.1e-141 507.7 550 53.1
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 1.1e-141 507.7 550 52.9
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 1.5e-141 507.3 549 52.1
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 4.8e-140 502.3 441 61.7
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 6.2e-140 501.9 549 51.7
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 6.2e-140 501.9 543 52.7
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 2.0e-138 496.9 522 52.7
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 1.7e-137 493.8 389 62.7
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 4.9e-137 492.3 549 51.2
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 3.2e-136 489.6 551 52.6
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.3e-134 484.2 479 55.7
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 2.0e-130 470.3 482 52.3
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 1.0e-126 458.0 548 48.4
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 1.1e-123 448.0 552 50.5
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 4.0e-123 446.0 473 52.9
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 6.9e-123 445.3 389 63.0
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 1.3e-121 441.0 352 62.8
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 7.4e-117 425.2 462 51.1
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 2.6e-114 416.8 549 43.4
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 9.7e-109 398.3 323 64.1
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 3.1e-107 393.3 347 59.7
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.0e-98 364.0 570 41.6
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.1e-96 358.2 401 52.9
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 5.0e-89 332.8 570 38.6
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 3.0e-86 323.6 429 43.4
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.2e-85 321.6 394 46.7
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 1.2e-85 321.6 546 39.0
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 2.0e-85 320.9 269 63.9
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 9.1e-83 312.0 556 38.8
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.9e-80 304.3 332 52.1
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 2.6e-77 293.9 217 67.3
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 5.9e-74 282.7 422 40.0
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 1.9e-72 277.7 481 39.1
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 2.5e-72 277.3 266 58.6
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 3.5e-66 256.9 276 52.9
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 2.5e-64 250.8 277 51.3
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 6.8e-62 242.7 349 42.7
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 4.4e-61 240.0 166 69.9
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 3.2e-59 233.8 262 50.4
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 1.3e-57 228.4 410 36.6
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 7.3e-56 222.6 196 57.7
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.2e-52 211.1 261 49.4
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 2.6e-45 187.6 163 62.0
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 1.2e-39 168.7 193 50.8
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 3.1e-38 164.1 156 59.0
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.4e-35 155.2 157 54.8
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.9e-35 154.8 245 44.9
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 2.1e-34 151.4 143 57.3
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 4.3e-32 143.7 119 61.3
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 2.4e-30 137.9 123 59.3
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 9.9e-29 132.5 233 39.9
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.3e-28 132.1 191 43.5
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 1.2e-21 109.0 196 40.8
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 1.3e-17 95.5 120 49.2
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 1.8e-17 95.1 127 46.5
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 1.2e-10 72.4 62 59.7
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 1.2e-10 72.4 62 59.7
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 4.6e-10 70.5 148 38.5


User provided reference genes

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