Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 2.7e-188 661.8 320 100.0
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 6.1e-164 580.9 300 92.3
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 1.9e-152 542.7 299 86.6
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 3.5e-135 485.3 298 77.5
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 6.0e-135 484.6 290 80.0
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 1.3e-134 483.4 283 82.3
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 4.4e-130 468.4 282 77.3
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 2.9e-129 465.7 285 77.2
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 2.4e-128 462.6 302 72.8
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 3.2e-128 462.2 302 72.8
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 2.7e-127 459.1 279 79.2
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 6.0e-127 458.0 282 77.0
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 6.0e-127 458.0 302 72.5
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 5.1e-126 454.9 293 76.1
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 4.3e-125 451.8 316 70.6
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 9.6e-125 450.7 280 77.1
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 2.8e-124 449.1 280 77.1
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 4.0e-123 445.3 292 74.0
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 6.9e-123 444.5 296 72.6
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 3.4e-122 442.2 279 75.3
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 3.4e-122 442.2 292 72.6
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 3.8e-121 438.7 279 75.3
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 1.9e-120 436.4 347 63.1
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 3.2e-120 435.6 281 73.0
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 4.2e-120 435.3 290 71.7
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 2.7e-119 432.6 281 73.7
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 6.0e-119 431.4 279 72.8
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 6.7e-118 427.9 282 72.0
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 8.7e-118 427.6 279 72.4
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 1.1e-117 427.2 277 73.6
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 1.5e-117 426.8 279 72.8
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 1.5e-117 426.8 291 69.1
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 9.6e-117 424.1 288 69.8
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 9.6e-117 424.1 279 74.2
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 1.3e-116 423.7 278 73.7
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 1.3e-116 423.7 274 73.4
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.6e-116 423.3 292 69.5
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 2.1e-116 422.9 277 73.6
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 2.8e-116 422.5 280 72.1
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 3.6e-116 422.2 302 68.5
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 8.1e-116 421.0 292 71.2
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 1.1e-115 420.6 282 69.5
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 1.1e-115 420.6 290 71.7
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.4e-115 420.2 304 67.8
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 1.8e-115 419.9 279 73.1
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 6.9e-115 417.9 284 70.4
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 6.9e-115 417.9 284 70.4
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 1.5e-114 416.8 280 69.6
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 2.6e-114 416.0 280 71.4
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 3.4e-114 415.6 280 71.8
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 9.9e-114 414.1 299 66.9
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 3.8e-113 412.1 282 69.9
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 1.4e-112 410.2 284 70.4
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 1.9e-112 409.8 285 70.5
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 9.3e-112 407.5 282 69.5
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.2e-111 407.1 267 68.5
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 1.2e-111 407.1 290 70.0
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 1.6e-111 406.8 282 68.4
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 2.1e-111 406.4 302 67.2
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 6.0e-111 404.8 303 66.3
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 6.0e-111 404.8 303 66.3
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 7.9e-111 404.4 293 66.9
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 7.9e-111 404.4 280 68.6
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 1.0e-110 404.1 293 66.9
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 2.3e-110 402.9 283 72.1
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 3.0e-110 402.5 281 68.3
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 3.0e-110 402.5 317 61.8
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 3.9e-110 402.1 283 71.7
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 6.7e-110 401.4 303 66.0
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 1.1e-109 400.6 283 68.9
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 4.3e-109 398.7 284 66.9
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 4.3e-109 398.7 284 66.9
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 4.3e-109 398.7 282 68.4
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 4.3e-109 398.7 282 68.4
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 4.3e-109 398.7 293 66.6
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.3e-108 397.1 280 71.8
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 2.1e-108 396.4 278 67.6
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 4.8e-108 395.2 289 63.7
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 4.8e-108 395.2 261 71.3
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 3.1e-107 392.5 281 67.6
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 2.6e-106 389.4 308 61.7
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 1.0e-105 387.5 371 55.0
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 8.4e-105 384.4 237 77.2
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 3.2e-104 382.5 279 67.0
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 5.5e-104 381.7 391 49.9
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 1.1e-101 374.0 237 74.7
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 1.5e-101 373.6 278 63.3
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 9.6e-101 370.9 268 67.9
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.8e-100 369.4 408 48.0
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 6.3e-100 368.2 238 72.3
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 1.0e-97 360.9 275 62.5
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 3.8e-97 359.0 288 61.1
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 3.0e-94 349.4 309 55.3
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 3.0e-94 349.4 284 58.8
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 3.9e-94 349.0 323 54.5
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 8.7e-94 347.8 238 70.2
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 2.0e-90 336.7 300 56.3
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 7.4e-85 318.2 264 56.8
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 4.5e-82 308.9 186 76.3
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 1.7e-81 307.0 325 52.3
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 7.9e-79 298.1 226 63.7
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 2.3e-78 296.6 217 64.1
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 2.6e-77 293.1 199 68.8
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 4.8e-76 288.9 291 51.5
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 4.1e-75 285.8 229 61.6
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 3.8e-73 279.3 305 47.9
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 7.2e-72 275.0 189 69.3
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 8.0e-71 271.6 268 50.4
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 4.7e-63 245.7 253 46.6
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 1.8e-62 243.8 143 76.2
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 5.4e-59 232.3 254 44.5
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 5.2e-54 215.7 257 43.6
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 1.5e-53 214.2 218 50.0
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 2.8e-52 209.9 195 55.4
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 8.0e-39 165.2 121 65.3
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 1.4e-38 164.5 113 69.0
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 7.5e-37 158.7 98 74.5
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 7.3e-32 142.1 89 71.9
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 7.5e-29 132.1 106 67.0
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 9.2e-27 125.2 96 67.7
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 2.1e-26 124.0 92 62.0
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 3.5e-26 123.2 111 57.7
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 3.9e-25 119.8 94 61.7
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 5.1e-25 119.4 114 55.3
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 1.6e-23 114.4 119 49.6
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 6.2e-23 112.5 96 60.4
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 1.5e-21 107.8 113 46.9
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 5.8e-21 105.9 94 63.8
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.1e-19 101.7 54 74.1
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 3.2e-19 100.1 52 82.7
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 3.2e-19 100.1 63 71.4
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 2.1e-18 97.4 76 64.5
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 1.1e-16 91.7 95 52.6
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 3.3e-16 90.1 63 63.5
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 1.4e-14 84.7 43 88.4
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 2.9e-12 77.0 38 78.9
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 6.4e-12 75.9 92 50.0
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 3.2e-11 73.6 57 59.6
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 3.2e-11 73.6 85 47.1
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 4.2e-11 73.2 36 72.2
Haze_05939 Corylus avellana HOM05D005284 ORTHO05D006609 1.9e-08 64.3 42 73.8
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 3.6e-07 60.1 33 66.7
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 3.6e-07 60.1 33 66.7


User provided reference genes

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