Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1264400 Malus domestica HOM05D000493 ORTHO05D008479 1.9e-77 292.7 186 100.0
MD10G1212300 Malus domestica HOM05D000493 ORTHO05D008479 4.6e-63 245.0 181 72.4
Prupe.4G130400 Prunus persica HOM05D000493 ORTHO05D008479 5.5e-56 221.5 181 66.3
RcHm_v2.0_Chr5g0023901 Rosa chinensis HOM05D000493 ORTHO05D008479 2.0e-45 186.4 181 56.9
FAN11G3278 Fragaria x ananassa HOM05D000493 ORTHO05D008479 1.2e-42 177.2 181 58.0
FAN21G0870 Fragaria x ananassa HOM05D000493 ORTHO05D008479 1.7e-41 173.3 181 56.9
FAN16G1799 Fragaria x ananassa HOM05D000493 ORTHO05D008479 2.2e-41 172.9 192 53.6
FAN25G0157 Fragaria x ananassa HOM05D000493 ORTHO05D008479 2.9e-41 172.6 181 56.4
FvH4_3g14512 Fragaria vesca HOM05D000493 ORTHO05D008479 1.9e-40 169.9 181 55.8
QL04p091579 Quercus lobata HOM05D000493 ORTHO05D008479 1.1e-35 154.1 205 47.3
QL04p092938 Quercus lobata HOM05D000493 ORTHO05D008479 1.1e-35 154.1 205 47.3
CiPaw.11G058200 Carya illinoinensis HOM05D000493 ORTHO05D008479 6.5e-33 144.8 188 47.9
Cfa019383 Carpinus fangiana HOM05D000493 ORTHO05D008479 4.2e-32 142.1 188 47.3
Haze_07782 Corylus avellana HOM05D000493 ORTHO05D008479 5.5e-32 141.7 188 46.8
Ciclev10004556m.g Citrus clementina HOM05D000493 ORTHO05D008479 7.2e-32 141.4 118 61.9
GSVIVG01036739001 Vitis vinifera HOM05D000493 ORTHO05D008479 6.1e-31 138.3 126 57.9
CANSAT56G1973 Cannabis sativa HOM05D000493 ORTHO05D008479 8.8e-30 134.4 119 54.6
TAR624G0207 Trochodendron aralioides HOM05D000493 ORTHO05D008479 8.8e-30 134.4 122 58.2
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 5.7e-29 131.7 193 42.5
Potri.010G173200 Populus trichocarpa HOM05D000493 ORTHO05D008479 5.7e-29 131.7 186 43.5
Sabra10G0132800 Salix brachista HOM05D000493 ORTHO05D008479 1.7e-28 130.2 187 47.6
Dinv42467 Davidia involucrata HOM05D000493 ORTHO05D008479 3.7e-28 129.0 190 41.6
Potri.008G083200 Populus trichocarpa HOM05D000493 ORTHO05D008479 3.7e-28 129.0 190 43.2
Thecc.07G188400 Theobroma cacao HOM05D000493 ORTHO05D008479 4.8e-28 128.6 118 57.6
Atru.chr1.68 Acer truncatum HOM05D000493 ORTHO05D008479 6.3e-28 128.3 93 66.7
arahy.Tifrunner.gnm1.ann1.KYYE3Y Arachis hypogaea HOM05D000493 ORTHO05D008479 1.1e-27 127.5 120 54.2
arahy.Tifrunner.gnm1.ann1.RK0Q3N Arachis hypogaea HOM05D000493 ORTHO05D008479 2.4e-27 126.3 119 53.8
Sed0008261 Sechium edule HOM05D000493 ORTHO05D008479 3.1e-27 125.9 181 40.9
TWI38G0886 Tripterygium wilfordii HOM05D000493 ORTHO05D008479 5.4e-27 125.2 187 44.4
Ca_23080_v3 Cicer arietinum L. HOM05D000493 ORTHO05D008479 7.0e-27 124.8 126 51.6
Duzib268G1049 Durio zibethinus HOM05D000493 ORTHO05D008479 7.0e-27 124.8 118 56.8
Gohir.A08G096000 Gossypium hirsutum HOM05D000493 ORTHO05D008479 7.0e-27 124.8 126 57.1
Gohir.D08G090000 Gossypium hirsutum HOM05D000493 ORTHO05D008479 1.2e-26 124.0 126 56.3
Lj3g0017623 Lotus japonicus HOM05D000493 ORTHO05D008479 1.6e-26 123.6 176 41.5
VMungo1127G1080 Vigna mungo HOM05D000493 ORTHO05D008479 2.7e-26 122.9 123 52.8
CSS0034774 Camellia sinensis var. sinensis HOM05D000493 ORTHO05D008479 4.5e-26 122.1 115 54.8
Manes.16G047500 Manihot esculenta HOM05D000493 ORTHO05D008479 4.5e-26 122.1 122 54.1
Peaxi162Scf00452g00237 Petunia axillaris HOM05D000493 ORTHO05D008479 5.9e-26 121.7 111 55.9
vmacro09767 Vaccinium macrocarpon HOM05D000493 ORTHO05D008479 7.7e-26 121.3 105 58.1
Glyma.08G234900 Glycine max HOM05D000493 ORTHO05D008479 1.0e-25 120.9 124 49.2
MBI01_g39016_MAGBIO Magnolia biondii HOM05D000493 ORTHO05D008479 1.7e-25 120.2 118 51.7
Lj2A12T44 Lonicera japonica HOM05D000493 ORTHO05D008479 2.3e-25 119.8 121 54.5
Gorai.004G095000 Gossypium raimondii HOM05D000493 ORTHO05D008479 3.8e-25 119.0 126 54.8
Hma1.2p1_0334F.1_g128470 Hydrangea macrophylla HOM05D000493 ORTHO05D008479 3.8e-25 119.0 192 38.5
HanXRQChr11g0321951 Helianthus annuus HOM05D000493 ORTHO05D008479 5.0e-25 118.6 119 52.1
Rhsim04G0003300 Rhododendron simsii HOM05D000493 ORTHO05D008479 6.6e-25 118.2 128 49.2
Sc07g0007180 Simmondsia chinensis HOM05D000493 ORTHO05D008479 6.6e-25 118.2 116 51.7
Lalb_Chr19g0133191 Lupinus albus HOM05D000493 ORTHO05D008479 1.1e-24 117.5 175 41.7
Actinidia00848 Actinidia chinensis HOM05D000493 ORTHO05D008479 2.5e-24 116.3 115 52.2
Lalb_Chr03g0031871 Lupinus albus HOM05D000493 ORTHO05D008479 2.5e-24 116.3 176 42.6
TPR.G9411 Trifolium pratense HOM05D000493 ORTHO05D008479 3.3e-24 115.9 194 38.7
ClCG09G022810 Citrullus lanatus HOM05D000493 ORTHO05D008479 4.2e-24 115.5 121 50.4
Migut.M01511 Erythranthe guttata HOM05D000493 ORTHO05D008479 4.2e-24 115.5 106 56.6
COL.COLO4_24970 Corchorus olitorius HOM05D000493 ORTHO05D008479 5.5e-24 115.2 184 40.2
ECA236G4525 Erigeron canadensis HOM05D006464 ORTHO05D007923 1.2e-23 114.0 105 55.2
Lsat_1_v5_gn_7_110901 Lactuca sativa HOM05D000493 ORTHO05D008479 1.6e-23 113.6 89 62.9
Phvul.011G179000 Phaseolus vulgaris HOM05D000493 ORTHO05D008479 2.1e-23 113.2 108 53.7
Psat4g141640 Pisum sativum HOM05D000493 ORTHO05D008479 2.8e-23 112.8 104 50.0
PGR042G3965 Punica granatum HOM05D000493 ORTHO05D008479 6.1e-23 111.7 122 47.5
SGA_v2.0_scaffold186G40182 Striga asiatica HOM05D000493 ORTHO05D008479 6.1e-23 111.7 183 39.9
CAN.G943.57 Capsicum annuum HOM05D000493 ORTHO05D008479 8.0e-23 111.3 93 58.1
CsaV3_7G023020 Cucumis sativus L. HOM05D000493 ORTHO05D008479 1.4e-22 110.5 121 48.8
MELO3C012596.2 Cucumis melo HOM05D000493 ORTHO05D008479 1.8e-22 110.2 121 47.9
Sopen07g034810 Solanum pennellii HOM05D000493 ORTHO05D008479 1.8e-22 110.2 111 52.3
Solyc07g066660.4 Solanum lycopersicum HOM05D000493 ORTHO05D008479 4.0e-22 109.0 111 52.3
Nitab4.5_0000029g0220 Nicotiana tabacum HOM05D000493 ORTHO05D008479 5.2e-22 108.6 111 50.5
Nitab4.5_0002862g0010 Nicotiana tabacum HOM05D000493 ORTHO05D008479 6.8e-22 108.2 111 49.5
AT1G16330 Arabidopsis thaliana HOM05D000493 ORTHO05D008479 2.0e-21 106.7 126 46.0
DCAR_013717 Daucus carota HOM05D000493 ORTHO05D008479 3.4e-21 105.9 107 49.5
Sp1g14520 Schrenkiella parvula HOM05D000493 ORTHO05D008479 4.4e-21 105.5 126 43.7
Hund12029 Selenicereus undatus HOM05D000493 ORTHO05D008479 5.7e-21 105.1 115 48.7
Nn7g38312 Nelumbo nucifera HOM05D000493 ORTHO05D008479 7.5e-21 104.8 185 38.4
EL10Ac2g03212 Beta vulgaris HOM05D000493 ORTHO05D008479 9.8e-21 104.4 102 51.0
AL1G28450 Arabidopsis lyrata HOM05D000493 ORTHO05D008479 1.3e-20 104.0 126 45.2
CARHR016800 Cardamine hirsuta HOM05D000493 ORTHO05D008479 1.7e-20 103.6 118 46.6
unitig_26.g10062 Utricularia gibba HOM05D000493 ORTHO05D008479 2.8e-20 102.8 93 55.9
SalBow8G0264 Salvia bowleyana HOM05D000493 ORTHO05D008479 3.7e-20 102.4 118 48.3
SalBow8G1608 Salvia bowleyana HOM05D000493 ORTHO05D008479 3.7e-20 102.4 118 48.3
BcaC05g25582 Brassica carinata HOM05D000493 ORTHO05D008479 4.9e-20 102.1 117 47.9
C05p14500 Brassica napus HOM05D000493 ORTHO05D008479 4.9e-20 102.1 117 47.9
BolC5t30175H Brassica oleracea HOM05D000493 ORTHO05D008479 4.9e-20 102.1 117 47.9
Oeu019717.1 Olea europaea HOM05D000493 ORTHO05D008479 6.3e-20 101.7 105 53.3
A06p12250 Brassica napus HOM05D000493 ORTHO05D008479 8.3e-20 101.3 126 44.4
Aqoxy1G01402 Aquilegia oxysepala HOM05D000493 ORTHO05D008479 1.1e-19 100.9 108 48.1
BraA08t35060Z Brassica rapa HOM05D000493 ORTHO05D008479 2.4e-19 99.8 126 41.3
Thhalv10007052m.g Eutrema salsugineum HOM05D000493 ORTHO05D008479 2.4e-19 99.8 121 43.0
Carub.0001s1607 Capsella rubella HOM05D000493 ORTHO05D008479 3.1e-19 99.4 126 42.9
BcaB03g13042 Brassica carinata HOM05D000493 ORTHO05D008479 9.2e-19 97.8 92 51.1
BraA06t24393Z Brassica rapa HOM05D000493 ORTHO05D008479 1.2e-18 97.4 126 42.9
BcaC07g38804 Brassica carinata HOM05D000493 ORTHO05D008479 1.6e-18 97.1 126 42.9
C08p17450 Brassica napus HOM05D000493 ORTHO05D008479 1.6e-18 97.1 126 43.7
BolC8t49370H Brassica oleracea HOM05D000493 ORTHO05D008479 1.6e-18 97.1 126 43.7
PSO675G4148 Papaver somniferum HOM05D000493 ORTHO05D008479 2.0e-18 96.7 120 44.2
Aa31LG7G850 Aethionema arabicum HOM05D000493 ORTHO05D008479 2.7e-18 96.3 123 43.9
Cc05_g16520 Coffea canephora HOM05D000493 ORTHO05D008479 2.7e-18 96.3 105 46.7
PSO541G1678 Papaver somniferum HOM05D000493 ORTHO05D008479 7.8e-18 94.7 120 43.3
BcaB02g06612 Brassica carinata HOM05D000493 ORTHO05D008479 1.0e-17 94.4 120 41.7
CDE12G0534 Ceratophyllum demersum HOM05D000493 ORTHO05D008479 1.1e-16 90.9 116 48.3
CSS0040750 Camellia sinensis var. sinensis HOM05D000493 ORTHO05D008479 2.1e-15 86.7 96 47.9
Eucgr.A00004 Eucalyptus grandis HOM05D000493 ORTHO05D008479 4.7e-15 85.5 77 54.5
HPP92_010214 Vanilla planifolia HOM05D000493 ORTHO05D008479 5.2e-14 82.0 100 46.0
SEGI_06173 Sequoiadendron giganteum HOM05D000493 ORTHO05D008479 8.6e-09 64.7 64 51.6
AUR62040867 Chenopodium quinoa HOM05D000493 ORTHO05D008479 1.5e-08 63.9 69 47.8
AUR62037659 Chenopodium quinoa HOM05D000493 ORTHO05D008479 5.6e-08 62.0 69 47.8
CsaV3_4G037240 Cucumis sativus L. HOM05D000493 ORTHO05D001355 7.3e-08 61.6 75 44.0
CDE01G0122 Ceratophyllum demersum HOM05D046632 ORTHO05D130162 2.8e-07 59.7 66 51.5
MELO3C017022.2 Cucumis melo HOM05D000493 ORTHO05D001355 3.6e-07 59.3 74 43.2
Zm00001eb272010 Zea mays HOM05D000493 ORTHO05D001355 3.6e-07 59.3 79 45.6
MD05G1236200 Malus domestica HOM05D000493 ORTHO05D008479 8.0e-07 58.2 33 81.8
ATR0661G096 Amborella trichopoda HOM05D000493 ORTHO05D001355 1.1e-06 57.8 72 43.1
Migut.C00388 Erythranthe guttata HOM05D000493 ORTHO05D001355 1.1e-06 57.8 76 43.4
Atru.chr13.143 Acer truncatum HOM05D000493 ORTHO05D001355 1.4e-06 57.4 75 42.7
Os06g0726800 Oryza sativa ssp. japonica HOM05D000493 ORTHO05D001355 1.8e-06 57.0 77 46.8
Sed0000322 Sechium edule HOM05D000493 ORTHO05D001355 1.8e-06 57.0 84 36.9
Dinv05528 Davidia involucrata HOM05D000493 ORTHO05D001355 2.3e-06 56.6 79 38.0
Mapoly0048s0068 Marchantia polymorpha HOM05D000493 ORTHO05D001355 2.3e-06 56.6 64 46.9
Rhsim06G0006700 Rhododendron simsii HOM05D000493 ORTHO05D001355 2.3e-06 56.6 84 38.1
SalBow7G1378 Salvia bowleyana HOM05D000493 ORTHO05D001355 2.3e-06 56.6 75 42.7
SMO351G0492 Selaginella moellendorffii HOM05D000493 ORTHO05D001355 2.3e-06 56.6 64 50.0
MSTRG.22103 Avicennia marina HOM05D000493 ORTHO05D001355 3.1e-06 56.2 73 41.1
Haze_22788 Corylus avellana HOM05D000493 ORTHO05D001355 3.1e-06 56.2 75 41.3
Eucgr.F01773 Eucalyptus grandis HOM05D000493 ORTHO05D001355 3.1e-06 56.2 75 40.0
SGA_v2.0_scaffold54G19672 Striga asiatica HOM05D000493 ORTHO05D001355 3.1e-06 56.2 75 37.3
GSVIVG01009895001 Vitis vinifera HOM05D000493 ORTHO05D001355 3.1e-06 56.2 72 44.4
Zm00001eb309490 Zea mays HOM05D000493 ORTHO05D001638 3.1e-06 56.2 71 39.4
Pp3c9_18910 Physcomitrium patens HOM05D000493 ORTHO05D001355 4.0e-06 55.8 64 46.9
Sabra02G0007400 Salix brachista HOM05D000493 ORTHO05D001355 4.0e-06 55.8 75 40.0
Zm00001eb305730 Zea mays HOM05D000493 ORTHO05D001638 4.0e-06 55.8 71 39.4
BcaC08g47130 Brassica carinata HOM05D000493 ORTHO05D001355 5.2e-06 55.5 81 38.3
CsaV3_6G047810 Cucumis sativus L. HOM05D000493 ORTHO05D001355 5.2e-06 55.5 88 38.6
RcHm_v2.0_Chr6g0280651 Rosa chinensis HOM05D000493 ORTHO05D001355 5.2e-06 55.5 73 41.1
BraA07t31724Z Brassica rapa HOM05D000493 ORTHO05D001355 6.8e-06 55.1 74 41.9
Ciclev10001235m.g Citrus clementina HOM05D000493 ORTHO05D001355 6.8e-06 55.1 75 40.0
Actinidia17045 Actinidia chinensis HOM05D001852 ORTHO05D001989 8.9e-06 54.7 84 38.1
Thhalv10018589m.g Eutrema salsugineum HOM05D000493 ORTHO05D001355 8.9e-06 54.7 82 35.4
Pp3c15_21520 Physcomitrium patens HOM05D000493 ORTHO05D001355 8.9e-06 54.7 64 45.3
Potri.002G010000 Populus trichocarpa HOM05D000493 ORTHO05D001355 8.9e-06 54.7 75 41.3
unitig_736.g22725 Utricularia gibba HOM05D000493 ORTHO05D001355 8.9e-06 54.7 83 39.8


User provided reference genes

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