Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1254400 Malus domestica HOM05D006750 ORTHO05D008426 2.5e-95 352.1 171 100.0
MD10G1234600 Malus domestica HOM05D006750 ORTHO05D008426 3.4e-84 315.1 171 90.1
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 2.0e-76 289.3 171 81.3
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 9.5e-71 270.4 171 76.0
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 1.2e-70 270.0 171 75.4
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 3.6e-70 268.5 171 76.0
RcHm_v2.0_Chr5g0019891 Rosa chinensis HOM05D006750 ORTHO05D008426 1.3e-67 260.0 171 73.1
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 4.1e-58 228.4 171 64.3
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 2.1e-54 216.1 166 60.8
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 1.5e-52 209.9 154 62.3
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 3.4e-52 208.8 168 58.3
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 4.4e-52 208.4 149 65.8
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 5.8e-52 208.0 167 59.3
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 9.9e-52 207.2 167 58.7
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 9.9e-52 207.2 137 68.6
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 1.3e-51 206.8 163 60.1
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 1.3e-51 206.8 142 68.3
Potri.012G120100 Populus trichocarpa HOM05D006750 ORTHO05D008426 1.7e-51 206.5 154 61.0
Haze_06024 Corylus avellana HOM05D006750 ORTHO05D008426 2.2e-51 206.1 150 64.7
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 4.9e-51 204.9 159 61.0
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 6.4e-51 204.5 150 64.0
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 1.1e-50 203.8 171 56.7
Sed0026407 Sechium edule HOM05D006750 ORTHO05D008426 1.1e-50 203.8 146 65.1
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 1.4e-50 203.4 168 61.9
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 9.2e-50 200.7 157 61.1
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 9.2e-50 200.7 150 62.0
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 2.7e-49 199.1 165 58.8
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 2.7e-49 199.1 145 62.1
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 3.5e-49 198.7 176 58.0
Eucgr.D01041 Eucalyptus grandis HOM05D006750 ORTHO05D008426 7.8e-49 197.6 142 62.7
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 1.0e-48 197.2 146 62.3
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 1.7e-48 196.4 165 58.2
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 2.3e-48 196.1 149 61.1
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 3.9e-48 195.3 153 60.8
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 5.1e-48 194.9 165 58.2
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 2.5e-47 192.6 148 63.5
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 3.3e-47 192.2 138 60.9
Nn7g38126 Nelumbo nucifera HOM05D006750 ORTHO05D008426 5.6e-47 191.4 169 55.6
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 7.3e-47 191.0 152 60.5
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 1.6e-46 189.9 151 60.9
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 4.7e-46 188.3 144 58.3
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 1.1e-45 187.2 147 61.2
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 1.1e-45 187.2 149 62.4
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 2.4e-45 186.0 146 59.6
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 3.1e-45 185.7 128 67.2
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 1.2e-44 183.7 136 61.0
CARHR134300 Cardamine hirsuta HOM05D006750 ORTHO05D008426 1.5e-44 183.3 145 59.3
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 1.7e-43 179.9 146 57.5
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 2.2e-43 179.5 151 55.0
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 2.9e-43 179.1 140 58.6
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 3.8e-43 178.7 137 59.9
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 4.9e-43 178.3 151 54.3
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 4.9e-43 178.3 151 54.3
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 6.4e-43 177.9 144 56.9
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 8.4e-43 177.6 146 56.8
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 1.1e-42 177.2 151 54.3
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 1.4e-42 176.8 151 53.6
Carub.0004s2150 Capsella rubella HOM05D006750 ORTHO05D008426 1.4e-42 176.8 140 57.9
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 1.9e-42 176.4 151 54.3
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 1.9e-42 176.4 160 52.5
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 3.2e-42 175.6 151 54.3
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 3.2e-42 175.6 151 55.0
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 4.2e-42 175.3 138 59.4
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 4.2e-42 175.3 146 56.2
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 7.1e-42 174.5 140 56.4
MSTRG.22268 Avicennia marina HOM05D006750 ORTHO05D008426 1.6e-41 173.3 136 56.6
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 1.6e-41 173.3 135 57.0
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 2.7e-41 172.6 168 53.6
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 2.7e-41 172.6 150 53.3
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 4.6e-41 171.8 137 59.1
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 3.0e-40 169.1 146 54.8
Migut.M01971 Erythranthe guttata HOM05D006750 ORTHO05D008426 3.0e-40 169.1 161 47.8
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 3.9e-40 168.7 152 52.6
Psat0s3953g0080 Pisum sativum HOM05D006750 ORTHO05D008426 6.6e-40 167.9 141 55.3
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 1.9e-39 166.4 152 53.3
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 2.5e-39 166.0 141 56.0
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 5.6e-39 164.9 114 68.4
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 7.3e-39 164.5 151 52.3
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 1.3e-38 163.7 137 54.0
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 1.3e-38 163.7 137 54.0
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 4.8e-38 161.8 139 54.7
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 4.8e-38 161.8 167 49.1
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 6.2e-38 161.4 145 55.9
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 1.4e-37 160.2 165 47.3
PSO675G8070 Papaver somniferum HOM05D006750 ORTHO05D008426 1.8e-37 159.8 144 54.2
PSO541G1844 Papaver somniferum HOM05D006750 ORTHO05D008426 2.4e-37 159.5 144 54.2
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 2.4e-37 159.5 139 54.7
CDE06G2778 Ceratophyllum demersum HOM05D006750 ORTHO05D008426 3.1e-37 159.1 123 58.5
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 6.9e-37 157.9 162 50.0
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 4.9e-35 151.8 110 61.8
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 6.4e-35 151.4 138 52.2
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 1.4e-34 150.2 169 43.8
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 1.4e-34 150.2 169 43.8
Lalb_Chr02g0152091 Lupinus albus HOM05D006750 ORTHO05D008426 1.2e-33 147.1 152 48.0
AUR62018626 Chenopodium quinoa HOM05D006750 ORTHO05D008426 2.7e-33 146.0 167 45.5
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 1.7e-32 143.3 119 58.8
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 2.5e-31 139.4 151 47.0
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 3.3e-31 139.0 116 54.3
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 1.1e-29 134.0 136 44.9
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 5.8e-28 128.3 141 46.8
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 9.9e-28 127.5 93 64.5
SMO367G1186 Selaginella moellendorffii HOM05D006750 ORTHO05D008426 7.1e-26 121.3 128 41.4
Peaxi162Scf00149g00921 Petunia axillaris HOM05D006750 ORTHO05D008426 2.1e-25 119.8 139 47.5
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 1.9e-23 113.2 145 39.3
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 4.8e-22 108.6 158 35.4
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 8.1e-22 107.8 197 35.5
CARHR087370 Cardamine hirsuta HOM05D006750 ORTHO05D008426 4.0e-21 105.5 69 69.6
Hund11170 Selenicereus undatus HOM05D006750 ORTHO05D008426 1.1e-18 97.4 64 64.1
Zm00001eb233030 Zea mays HOM05D006750 ORTHO05D008426 1.9e-18 96.7 139 40.3
Cpa.g.sc135.32 Carica papaya HOM05D006750 ORTHO05D008426 7.4e-15 84.7 71 54.9
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 2.4e-13 79.7 104 35.6
Sopen02g018170 Solanum pennellii HOM05D006750 ORTHO05D008426 5.3e-13 78.6 58 56.9
Zm00001eb233050 Zea mays HOM05D006750 ORTHO05D008426 1.3e-11 73.9 137 35.0
Hund11169 Selenicereus undatus HOM05D006750 ORTHO05D008426 1.7e-11 73.6 82 45.1
PRCOL_00005799 Prasinoderma coloniale HOM05D006750 ORTHO05D008426 3.2e-10 69.3 140 32.1
TPR.G24917 Trifolium pratense HOM05D006750 ORTHO05D008426 3.5e-09 65.9 63 52.4


User provided reference genes

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