Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1253300 Malus domestica HOM05D004878 ORTHO05D006497 1.0e-72 276.6 135 100.0
MD05G1253100 Malus domestica HOM05D004878 ORTHO05D006497 3.3e-50 201.8 203 57.6
MD10G1234100 Malus domestica HOM05D004878 ORTHO05D006497 4.0e-48 194.9 203 56.2
CiPaw.09G078300 Carya illinoinensis HOM05D004878 ORTHO05D006497 2.6e-47 192.2 166 62.7
FAN16G2586 Fragaria x ananassa HOM05D004878 ORTHO05D006497 1.9e-45 186.0 203 53.2
CANSAT35G1110 Cannabis sativa HOM05D004878 ORTHO05D006497 3.2e-45 185.3 203 53.2
FvH4_3g12170 Fragaria vesca HOM05D004878 ORTHO05D006497 3.2e-45 185.3 203 52.7
RcHm_v2.0_Chr5g0019961 Rosa chinensis HOM05D004878 ORTHO05D006497 7.1e-45 184.1 203 53.2
HanXRQChr12g0378221 Helianthus annuus HOM05D004878 ORTHO05D006497 3.5e-44 181.8 203 51.2
GSVIVG01012083001 Vitis vinifera HOM05D004878 ORTHO05D006497 4.6e-44 181.4 203 52.7
MSTRG.16341 Avicennia marina HOM05D004878 ORTHO05D006497 6.0e-44 181.0 203 51.7
Potri.015G120400 Populus trichocarpa HOM05D004878 ORTHO05D006497 7.8e-44 180.6 203 52.7
Potri.012G120492 Populus trichocarpa HOM05D004878 ORTHO05D006497 1.0e-43 180.3 203 52.7
TPR.G9524 Trifolium pratense HOM05D004878 ORTHO05D006497 1.0e-43 180.3 203 52.2
Thhalv10009483m.g Eutrema salsugineum HOM05D004878 ORTHO05D006497 2.3e-43 179.1 189 54.5
Cc09_g06230 Coffea canephora HOM05D004878 ORTHO05D006497 3.0e-43 178.7 203 51.2
Lj1A1144T48 Lonicera japonica HOM05D004878 ORTHO05D006497 3.0e-43 178.7 203 51.2
EL10Ac5g11219 Beta vulgaris HOM05D004878 ORTHO05D006497 3.9e-43 178.3 203 49.8
Gohir.D05G147300 Gossypium hirsutum HOM05D004878 ORTHO05D006497 5.1e-43 177.9 203 52.2
Gorai.009G151300 Gossypium raimondii HOM05D004878 ORTHO05D006497 5.1e-43 177.9 203 52.2
Psat1g023920 Pisum sativum HOM05D004878 ORTHO05D006497 6.6e-43 177.6 203 51.2
ATR0763G188 Amborella trichopoda HOM05D004878 ORTHO05D006497 8.6e-43 177.2 203 50.7
Ciclev10015670m.g Citrus clementina HOM05D004878 ORTHO05D006497 8.6e-43 177.2 203 51.7
Manes.16G059325 Manihot esculenta HOM05D004878 ORTHO05D006497 8.6e-43 177.2 203 51.7
Cfa000720 Carpinus fangiana HOM05D004878 ORTHO05D006497 1.1e-42 176.8 203 51.2
Eucgr.E01881 Eucalyptus grandis HOM05D004878 ORTHO05D006497 1.1e-42 176.8 203 50.7
Gohir.A05G144900 Gossypium hirsutum HOM05D004878 ORTHO05D006497 1.1e-42 176.8 203 51.7
TWI63G1027 Tripterygium wilfordii HOM05D004878 ORTHO05D006497 1.1e-42 176.8 203 51.2
Solyc02g069010.4 Solanum lycopersicum HOM05D004878 ORTHO05D006497 1.5e-42 176.4 203 50.2
CAN.G519.8 Capsicum annuum HOM05D004878 ORTHO05D006497 1.9e-42 176.0 203 49.8
COL.COLO4_30984 Corchorus olitorius HOM05D004878 ORTHO05D006497 1.9e-42 176.0 203 51.2
Sed0019791 Sechium edule HOM05D004878 ORTHO05D006497 1.9e-42 176.0 203 51.7
TAR624G0003 Trochodendron aralioides HOM05D004878 ORTHO05D006497 1.9e-42 176.0 203 50.7
Atru.chr10.492 Acer truncatum HOM05D004878 ORTHO05D006497 2.5e-42 175.6 203 51.2
DCAR_003786 Daucus carota HOM05D004878 ORTHO05D006497 2.5e-42 175.6 203 49.8
AT1G31190 Arabidopsis thaliana HOM05D004878 ORTHO05D006497 3.3e-42 175.3 203 50.7
MBI01_g44876_MAGBIO Magnolia biondii HOM05D004878 ORTHO05D006497 3.3e-42 175.3 203 50.7
Nitab4.5_0002056g0080 Nicotiana tabacum HOM05D004878 ORTHO05D006497 3.3e-42 175.3 203 49.8
arahy.Tifrunner.gnm1.ann1.6I23D0 Arachis hypogaea HOM05D004878 ORTHO05D006497 4.3e-42 174.9 203 50.2
Carub.0001s2959 Capsella rubella HOM05D004878 ORTHO05D006497 4.3e-42 174.9 203 50.2
CARHR030660 Cardamine hirsuta HOM05D004878 ORTHO05D006497 4.3e-42 174.9 203 50.2
Lalb_Chr11g0072281 Lupinus albus HOM05D004878 ORTHO05D006497 4.3e-42 174.9 203 51.2
THA.LOC104798550 Tarenaya hassleriana HOM05D004878 ORTHO05D006497 4.3e-42 174.9 203 50.7
CsaV3_1G017150 Cucumis sativus L. HOM05D004878 ORTHO05D006497 5.6e-42 174.5 203 51.2
Duzib235G0192 Durio zibethinus HOM05D004878 ORTHO05D006497 5.6e-42 174.5 203 51.2
SalBow8G2261 Salvia bowleyana HOM05D004878 ORTHO05D006497 5.6e-42 174.5 203 50.7
ECA246G0899 Erigeron canadensis HOM05D004878 ORTHO05D006497 7.3e-42 174.1 203 49.8
Thhalv10007962m.g Eutrema salsugineum HOM05D004878 ORTHO05D006497 7.3e-42 174.1 203 50.2
Phvul.009G205700 Phaseolus vulgaris HOM05D004878 ORTHO05D006497 7.3e-42 174.1 203 50.2
AL1G49290 Arabidopsis lyrata HOM05D004878 ORTHO05D006497 9.5e-42 173.7 203 50.2
arahy.Tifrunner.gnm1.ann1.RY21T0 Arachis hypogaea HOM05D004878 ORTHO05D006497 9.5e-42 173.7 203 49.8
Ca_04469_v3 Cicer arietinum L. HOM05D004878 ORTHO05D006497 9.5e-42 173.7 203 50.2
Glyma.06G218300 Glycine max HOM05D004878 ORTHO05D006497 9.5e-42 173.7 203 50.2
Sopen02g018080 Solanum pennellii HOM05D004878 ORTHO05D006497 1.2e-41 173.3 203 49.8
Sp1g27010 Schrenkiella parvula HOM05D004878 ORTHO05D006497 1.6e-41 172.9 203 49.8
Medtr0151s0030 Medicago truncatula HOM05D004878 ORTHO05D006497 2.1e-41 172.6 203 50.2
Lj6g0027572 Lotus japonicus HOM05D004878 ORTHO05D006497 2.8e-41 172.2 203 49.8
BcaB07g32781 Brassica carinata HOM05D004878 ORTHO05D006497 3.6e-41 171.8 203 49.3
BcaC05g27149 Brassica carinata HOM05D004878 ORTHO05D006497 3.6e-41 171.8 203 49.3
A09p35050 Brassica napus HOM05D004878 ORTHO05D006497 3.6e-41 171.8 203 49.3
C05p30360 Brassica napus HOM05D004878 ORTHO05D006497 3.6e-41 171.8 203 49.3
BolC5t31775H Brassica oleracea HOM05D004878 ORTHO05D006497 3.6e-41 171.8 203 49.3
BraA09t39036Z Brassica rapa HOM05D004878 ORTHO05D006497 3.6e-41 171.8 203 49.3
VMungo1309G2006 Vigna mungo HOM05D004878 ORTHO05D006497 3.6e-41 171.8 203 49.8
Migut.M01973 Erythranthe guttata HOM05D004878 ORTHO05D006497 4.7e-41 171.4 203 49.3
unitig_27.g24819 Utricularia gibba HOM05D004878 ORTHO05D006497 4.7e-41 171.4 203 49.3
Aqoxy3G04145 Aquilegia oxysepala HOM05D004878 ORTHO05D006497 6.2e-41 171.0 203 49.3
AUR62036922 Chenopodium quinoa HOM05D004878 ORTHO05D006497 6.2e-41 171.0 203 49.3
Lsat_1_v5_gn_5_36260 Lactuca sativa HOM05D004878 ORTHO05D006497 6.2e-41 171.0 204 49.5
Thecc.06G141500 Theobroma cacao HOM05D004878 ORTHO05D006497 6.2e-41 171.0 203 50.2
QL11p017966 Quercus lobata HOM05D004878 ORTHO05D006497 8.1e-41 170.6 202 50.0
Actinidia33655 Actinidia chinensis HOM05D004878 ORTHO05D006497 1.1e-40 170.2 203 49.8
Aa31LG2G15140 Aethionema arabicum HOM05D004878 ORTHO05D006497 1.1e-40 170.2 203 49.8
Ah.02g114390 Amaranthus hybridus HOM05D004878 ORTHO05D006497 2.3e-40 169.1 203 48.3
CSS0029949 Camellia sinensis var. sinensis HOM05D004878 ORTHO05D006497 2.3e-40 169.1 201 49.3
Rhsim13G0131200 Rhododendron simsii HOM05D004878 ORTHO05D006497 2.3e-40 169.1 203 49.8
Sc10g0005320 Simmondsia chinensis HOM05D004878 ORTHO05D006497 2.3e-40 169.1 203 48.8
AUR62032164 Chenopodium quinoa HOM05D004878 ORTHO05D006497 5.2e-40 167.9 203 48.8
vmacro03511 Vaccinium macrocarpon HOM05D004878 ORTHO05D006497 6.8e-40 167.5 220 46.8
Gorai.009G151200 Gossypium raimondii HOM05D004878 ORTHO05D006497 1.5e-39 166.4 203 48.8
Gohir.D05G147200 Gossypium hirsutum HOM05D004878 ORTHO05D006497 4.4e-39 164.9 203 48.3
PSO675G2265 Papaver somniferum HOM05D004878 ORTHO05D006497 4.4e-39 164.9 203 48.3
PSO675G3235 Papaver somniferum HOM05D004878 ORTHO05D006497 9.9e-39 163.7 203 47.8
Sabra12G0091900 Salix brachista HOM05D004878 ORTHO05D006497 9.9e-39 163.7 256 43.0
Sabra12G0088600 Salix brachista HOM05D004878 ORTHO05D006497 1.3e-38 163.3 243 43.6
CDE05G2830 Ceratophyllum demersum HOM05D004878 ORTHO05D006497 1.7e-38 162.9 203 48.8
SalBow8G2923 Salvia bowleyana HOM05D004878 ORTHO05D006497 2.2e-38 162.5 97 83.5
Nitab4.5_0003773g0010 Nicotiana tabacum HOM05D004878 ORTHO05D006497 6.4e-38 161.0 97 79.4
Cpa.g.sc135.22 Carica papaya HOM05D004878 ORTHO05D006497 8.4e-38 160.6 97 82.5
Os02g0169900 Oryza sativa ssp. japonica HOM05D004878 ORTHO05D006497 8.4e-38 160.6 203 46.8
Gohir.A05G144800 Gossypium hirsutum HOM05D004878 ORTHO05D006497 1.1e-37 160.2 203 47.8
ClCG01G010320 Citrullus lanatus HOM05D004878 ORTHO05D006497 2.4e-37 159.1 240 43.8
Hund02535 Selenicereus undatus HOM05D004878 ORTHO05D006497 4.1e-37 158.3 228 43.0
SMO351G0334 Selaginella moellendorffii HOM05D004878 ORTHO05D006497 5.4e-37 157.9 199 46.2
Peaxi162Scf00149g00811 Petunia axillaris HOM05D004878 ORTHO05D006497 9.2e-37 157.1 189 48.7
HPP92_028557 Vanilla planifolia HOM05D004878 ORTHO05D006497 2.1e-36 156.0 97 80.4
SEGI_01553 Sequoiadendron giganteum HOM05D004878 ORTHO05D006497 2.7e-36 155.6 203 44.8
Zm00001eb207300 Zea mays HOM05D004878 ORTHO05D006497 2.7e-36 155.6 203 45.3
FAN25G2275 Fragaria x ananassa HOM05D004878 ORTHO05D006497 1.7e-35 152.9 190 50.5
Mapoly0024s0023 Marchantia polymorpha HOM05D004878 ORTHO05D006497 8.6e-35 150.6 203 43.8
Pp3c21_18140 Physcomitrium patens HOM05D004878 ORTHO05D006497 1.2e-33 146.7 203 42.4
CBR_g30341 Chara braunii HOM05D004878 ORTHO05D006497 2.6e-31 139.0 95 72.6
AagrBONN_evm.TU.Sc2ySwM_228.275 Anthoceros agrestis HOM05D004878 ORTHO05D006497 3.8e-30 135.2 92 72.8
MD05G1254000 Malus domestica HOM05D001295 ORTHO05D002125 3.8e-30 135.2 80 86.2
PGR042G0940 Punica granatum HOM05D004878 ORTHO05D006497 1.4e-29 133.3 161 49.1
FAN21G2052 Fragaria x ananassa HOM05D004878 ORTHO05D006497 1.9e-29 132.9 167 47.9
Nn7g38129 Nelumbo nucifera HOM05D004878 ORTHO05D006497 2.4e-29 132.5 167 47.9
RcHm_v2.0_Chr5g0019951 Rosa chinensis HOM05D004878 ORTHO05D006497 5.4e-29 131.3 126 57.1
Prupe.4G110600 Prunus persica HOM05D004878 ORTHO05D006497 2.1e-28 129.4 165 52.1
MELO3C025560.2 Cucumis melo HOM05D004878 ORTHO05D006497 7.8e-28 127.5 167 46.7
Hma1.2p1_0185F.1_g081360 Hydrangea macrophylla HOM05D004878 ORTHO05D006497 5.8e-23 111.3 61 85.2
PRCOL_00002057 Prasinoderma coloniale HOM05D004878 ORTHO05D006497 2.9e-22 109.0 204 36.3
Cre02.g109600 Chlamydomonas reinhardtii HOM05D004878 ORTHO05D006497 6.4e-22 107.8 200 33.0
CSS0033970 Camellia sinensis var. sinensis HOM05D004878 ORTHO05D006497 2.5e-18 95.9 67 70.1
Cre02.g085900 Chlamydomonas reinhardtii HOM05D004878 ORTHO05D006497 5.6e-18 94.7 197 31.0
MD10G1234300 Malus domestica HOM05D004878 ORTHO05D006497 3.6e-17 92.0 56 85.7
MD05G1355100 Malus domestica HOM05D004878 ORTHO05D006497 6.4e-14 81.3 124 41.9
SGA_v2.0_scaffold175G39366 Striga asiatica HOM05D004878 ORTHO05D006497 3.2e-13 79.0 136 37.5
CSS0012367 Camellia sinensis var. sinensis HOM05D004878 ORTHO05D006497 2.5e-10 69.3 31 96.8
AagrBONN_evm.TU.Sc2ySwM_362.1349 Anthoceros agrestis HOM05D004878 ORTHO05D004442 1.4e-08 63.5 64 48.4
HPP92_027574 Vanilla planifolia HOM05D004878 ORTHO05D006497 1.4e-08 63.5 30 93.3
Pp3c21_8340 Physcomitrium patens HOM05D004878 ORTHO05D004442 3.1e-08 62.4 64 46.9
MD05G1355200 Malus domestica HOM05D004878 ORTHO05D006497 1.2e-07 60.5 45 68.9
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 1.2e-07 60.5 66 43.9
Mapoly0154s0008 Marchantia polymorpha HOM05D004878 ORTHO05D004442 2.6e-07 59.3 64 45.3
Mapoly0019s0083 Marchantia polymorpha HOM05D004878 ORTHO05D004442 4.5e-07 58.5 64 45.3
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 1.0e-06 57.4 65 46.2
arahy.Tifrunner.gnm1.ann1.NU7K1K Arachis hypogaea HOM05D000919 ORTHO05D004442 1.7e-06 56.6 144 26.4
PRCOL_00004145 Prasinoderma coloniale HOM05D000919 ORTHO05D004442 2.2e-06 56.2 64 45.3
MELO3C025552.2 Cucumis melo HOM05D000919 ORTHO05D004442 2.9e-06 55.8 141 27.0
PGSC0003DMG402022924 Solanum tuberosum HOM05D000919 ORTHO05D004442 2.9e-06 55.8 164 25.6
SEGI_25311 Sequoiadendron giganteum HOM05D000919 ORTHO05D004442 3.8e-06 55.5 66 37.9
AagrBONN_evm.TU.Sc2ySwM_228.1965 Anthoceros agrestis HOM05D000919 ORTHO05D004442 4.9e-06 55.1 65 43.1
Solyc03g044890.1 Solanum lycopersicum HOM05D000919 ORTHO05D004442 4.9e-06 55.1 164 25.6
SGA_v2.0_scaffold89G27511 Striga asiatica HOM05D000919 ORTHO05D004442 4.9e-06 55.1 169 24.3
Haze_27490 Corylus avellana HOM05D004878 ORTHO05D006497 6.5e-06 54.7 58 41.4
Peaxi162Scf00352g00717 Petunia axillaris HOM05D000919 ORTHO05D004442 6.5e-06 54.7 61 44.3


User provided reference genes

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