Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1245600 Malus domestica HOM05D004928 ORTHO05D005901 1.7e-128 462.6 217 100.0
MD10G1226900 Malus domestica HOM05D004928 ORTHO05D005901 5.1e-61 238.4 211 58.8
Prupe.4G118300 Prunus persica HOM05D004928 ORTHO05D005901 1.3e-56 223.8 211 54.0
RcHm_v2.0_Chr5g0021221 Rosa chinensis HOM05D004928 ORTHO05D005901 4.2e-55 218.8 211 52.6
Sc04g0010410 Simmondsia chinensis HOM05D004928 ORTHO05D005901 7.1e-55 218.0 211 53.1
FAN21G2782 Fragaria x ananassa HOM05D004928 ORTHO05D005901 9.3e-55 217.6 211 52.1
CANSAT54G2025 Cannabis sativa HOM05D004928 ORTHO05D005901 1.2e-54 217.2 211 52.6
FvH4_3g13030 Fragaria vesca HOM05D004928 ORTHO05D005901 1.2e-54 217.2 211 52.1
FAN11G1970 Fragaria x ananassa HOM05D004928 ORTHO05D005901 1.2e-54 217.2 211 52.1
FAN16G2045 Fragaria x ananassa HOM05D004928 ORTHO05D005901 1.2e-54 217.2 211 52.1
FAN25G2296 Fragaria x ananassa HOM05D004928 ORTHO05D005901 1.2e-54 217.2 211 52.1
Lalb_Chr15g0083731 Lupinus albus HOM05D004928 ORTHO05D005901 1.6e-54 216.9 142 68.3
vmacro03559 Vaccinium macrocarpon HOM05D004928 ORTHO05D005901 6.0e-54 214.9 219 49.3
PSO675G0356 Papaver somniferum HOM05D004928 ORTHO05D005901 1.7e-53 213.4 211 50.2
PSO675G4596 Papaver somniferum HOM05D004928 ORTHO05D005901 1.7e-53 213.4 211 50.2
AUR62005675 Chenopodium quinoa HOM05D004928 ORTHO05D005901 3.0e-53 212.6 211 51.7
Glyma.09G050700 Glycine max HOM05D004928 ORTHO05D005901 5.1e-53 211.8 211 49.8
CsaV3_6G052980 Cucumis sativus L. HOM05D004928 ORTHO05D005901 8.7e-53 211.1 211 49.8
GSVIVG01012153001 Vitis vinifera HOM05D004928 ORTHO05D005901 8.7e-53 211.1 211 50.2
Dinv07002 Davidia involucrata HOM05D004928 ORTHO05D005901 1.1e-52 210.7 211 50.7
Manes.16G057900 Manihot esculenta HOM05D004928 ORTHO05D005901 1.1e-52 210.7 211 50.7
AUR62028880 Chenopodium quinoa HOM05D004928 ORTHO05D005901 1.5e-52 210.3 211 51.2
Glyma.15G156700 Glycine max HOM05D004928 ORTHO05D005901 1.5e-52 210.3 211 49.3
Thecc.02G003200 Theobroma cacao HOM05D004928 ORTHO05D005901 1.5e-52 210.3 211 50.2
ClCG01G025740 Citrullus lanatus HOM05D004928 ORTHO05D005901 1.9e-52 209.9 211 50.2
QL11p012028 Quercus lobata HOM05D004928 ORTHO05D005901 1.9e-52 209.9 211 49.3
arahy.Tifrunner.gnm1.ann1.C65LVJ Arachis hypogaea HOM05D004928 ORTHO05D005901 2.5e-52 209.5 211 50.2
arahy.Tifrunner.gnm1.ann1.D040QL Arachis hypogaea HOM05D004928 ORTHO05D005901 2.5e-52 209.5 211 50.2
Lj6g0011694 Lotus japonicus HOM05D004928 ORTHO05D005901 3.3e-52 209.1 211 49.8
Medtr2g035440 Medicago truncatula HOM05D004928 ORTHO05D005901 3.3e-52 209.1 211 49.3
Hma1.2p1_0088F.1_g045270 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 5.6e-52 208.4 211 49.8
Ciclev10016366m.g Citrus clementina HOM05D004928 ORTHO05D005901 7.3e-52 208.0 211 50.2
TAR624G0928 Trochodendron aralioides HOM05D004928 ORTHO05D005901 7.3e-52 208.0 214 48.6
CiPaw.09G137900 Carya illinoinensis HOM05D004928 ORTHO05D005901 9.6e-52 207.6 211 50.2
TWI63G1259 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 9.6e-52 207.6 211 48.3
Sed0024720 Sechium edule HOM05D004928 ORTHO05D005901 1.3e-51 207.2 211 49.8
Thhalv10001002m.g Eutrema salsugineum HOM05D004928 ORTHO05D005901 1.6e-51 206.8 210 50.5
Hma1.2p1_1011F.1_g247510 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 1.6e-51 206.8 212 49.5
Lalb_Chr20g0114311 Lupinus albus HOM05D004928 ORTHO05D005901 1.6e-51 206.8 211 48.8
Psat1g150320 Pisum sativum HOM05D004928 ORTHO05D005901 1.6e-51 206.8 211 49.3
Hund06113 Selenicereus undatus HOM05D004928 ORTHO05D005901 1.6e-51 206.8 211 50.2
THA.LOC104811853 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 1.6e-51 206.8 211 49.3
VMungo1309G2001 Vigna mungo HOM05D004928 ORTHO05D005901 1.6e-51 206.8 211 48.3
Atru.chr10.297 Acer truncatum HOM05D004928 ORTHO05D005901 2.1e-51 206.5 211 49.8
Aa31LG9G8440 Aethionema arabicum HOM05D004928 ORTHO05D005901 2.1e-51 206.5 210 50.0
Aqoxy1G01399 Aquilegia oxysepala HOM05D004928 ORTHO05D005901 2.1e-51 206.5 211 47.9
Eucgr.D00011 Eucalyptus grandis HOM05D004928 ORTHO05D005901 2.1e-51 206.5 211 49.3
Gohir.D11G203900 Gossypium hirsutum HOM05D004928 ORTHO05D005901 2.1e-51 206.5 211 49.3
Gorai.007G218800 Gossypium raimondii HOM05D004928 ORTHO05D005901 2.1e-51 206.5 211 49.3
PGR004G1274 Punica granatum HOM05D004928 ORTHO05D005901 2.1e-51 206.5 211 49.8
Ah.02g131070 Amaranthus hybridus HOM05D004928 ORTHO05D005901 2.8e-51 206.1 211 49.8
Gohir.A11G219600 Gossypium hirsutum HOM05D004928 ORTHO05D005901 2.8e-51 206.1 211 48.8
TPR.G29696 Trifolium pratense HOM05D004928 ORTHO05D005901 2.8e-51 206.1 211 48.8
Nitab4.5_0003602g0030 Nicotiana tabacum HOM05D004928 ORTHO05D005901 4.8e-51 205.3 214 47.7
Sp2g09570 Schrenkiella parvula HOM05D004928 ORTHO05D005901 4.8e-51 205.3 210 50.0
CiPaw.10G105700 Carya illinoinensis HOM05D004928 ORTHO05D005901 6.2e-51 204.9 211 48.8
Rhsim13G0134100 Rhododendron simsii HOM05D004928 ORTHO05D005901 6.2e-51 204.9 211 49.3
RhsimUnG0177000 Rhododendron simsii HOM05D004928 ORTHO05D005901 6.2e-51 204.9 211 49.3
AL8G14800 Arabidopsis lyrata HOM05D004928 ORTHO05D005901 8.1e-51 204.5 210 49.5
CARHR178170 Cardamine hirsuta HOM05D004928 ORTHO05D005901 8.1e-51 204.5 210 50.5
TWI63G1368 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 1.1e-50 204.1 211 48.3
CSS0019994 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.4e-50 203.8 211 48.3
Duzib052G0480 Durio zibethinus HOM05D004928 ORTHO05D005901 1.8e-50 203.4 211 48.8
Peaxi162Scf00036g02214 Petunia axillaris HOM05D004928 ORTHO05D005901 1.8e-50 203.4 211 48.3
THA.LOC104806228 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 1.8e-50 203.4 211 48.8
CSS0010455 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 2.4e-50 203.0 197 50.8
Carub.0008s0353 Capsella rubella HOM05D004928 ORTHO05D005901 2.4e-50 203.0 210 49.0
COL.COLO4_16227 Corchorus olitorius HOM05D004928 ORTHO05D005901 2.4e-50 203.0 211 48.8
Rhsim07G0106700 Rhododendron simsii HOM05D004928 ORTHO05D005901 3.1e-50 202.6 211 48.3
Rhsim07G0107300 Rhododendron simsii HOM05D004928 ORTHO05D005901 3.1e-50 202.6 211 48.3
BcaC06g34510 Brassica carinata HOM05D004928 ORTHO05D005901 4.0e-50 202.2 210 49.5
C07p27700 Brassica napus HOM05D004928 ORTHO05D005901 4.0e-50 202.2 210 49.5
BolC7t43301H Brassica oleracea HOM05D004928 ORTHO05D005901 4.0e-50 202.2 210 49.5
MBI18_g01521_MAGBIO Magnolia biondii HOM05D004928 ORTHO05D005901 4.0e-50 202.2 225 45.8
Lalb_Chr15g0083711 Lupinus albus HOM05D004928 ORTHO05D005901 5.3e-50 201.8 211 47.4
ATR0763G111 Amborella trichopoda HOM05D004928 ORTHO05D005901 6.9e-50 201.4 211 48.3
A06p46950 Brassica napus HOM05D004928 ORTHO05D005901 9.0e-50 201.1 210 49.0
BraA06t27568Z Brassica rapa HOM05D004928 ORTHO05D005901 9.0e-50 201.1 210 49.0
CSS0036020 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 9.0e-50 201.1 222 46.4
PGSC0003DMG400007328 Solanum tuberosum HOM05D004928 ORTHO05D005901 1.5e-49 200.3 214 46.3
HanXRQChr16g0510381 Helianthus annuus HOM05D004928 ORTHO05D005901 2.6e-49 199.5 211 46.9
Lsat_1_v5_gn_8_100741 Lactuca sativa HOM05D004928 ORTHO05D005901 2.6e-49 199.5 211 46.0
AT5G44730 Arabidopsis thaliana HOM05D004928 ORTHO05D005901 3.4e-49 199.1 211 49.3
CAN.G809.53 Capsicum annuum HOM05D004928 ORTHO05D005901 4.5e-49 198.7 213 46.5
Oeu008731.1 Olea europaea HOM05D004928 ORTHO05D005901 4.5e-49 198.7 211 47.4
ECA236G0137 Erigeron canadensis HOM05D004928 ORTHO05D005901 5.8e-49 198.4 211 46.0
Lj2A342G117 Lonicera japonica HOM05D004928 ORTHO05D005901 1.3e-48 197.2 247 42.5
SEGI_30550 Sequoiadendron giganteum HOM05D004928 ORTHO05D005901 1.7e-48 196.8 211 46.9
EL10Ac6g13559 Beta vulgaris HOM05D004928 ORTHO05D005901 2.9e-48 196.1 238 45.0
Duzib132G1236 Durio zibethinus HOM05D004928 ORTHO05D005901 2.9e-48 196.1 206 48.1
SalBow8G3731 Salvia bowleyana HOM05D004928 ORTHO05D005901 2.9e-48 196.1 213 46.5
HPP92_011006 Vanilla planifolia HOM05D004928 ORTHO05D005901 3.8e-48 195.7 211 47.9
Migut.M02014 Erythranthe guttata HOM05D004928 ORTHO05D005901 8.4e-48 194.5 211 46.4
Solyc02g081830.4 Solanum lycopersicum HOM05D004928 ORTHO05D005901 1.1e-47 194.1 211 46.0
Sopen02g026430 Solanum pennellii HOM05D004928 ORTHO05D005901 1.1e-47 194.1 211 46.0
BcaB07g30927 Brassica carinata HOM05D004928 ORTHO05D005901 1.4e-47 193.7 211 49.3
Cc09_g05120 Coffea canephora HOM05D004928 ORTHO05D005901 1.4e-47 193.7 211 46.4
DCAR_003759 Daucus carota HOM05D004928 ORTHO05D005901 1.4e-47 193.7 211 46.9
Lj2A342T116 Lonicera japonica HOM05D004928 ORTHO05D005901 1.4e-47 193.7 245 42.0
unitig_748.g8070 Utricularia gibba HOM05D004928 ORTHO05D005901 1.4e-47 193.7 209 46.4
Nitab4.5_0003902g0100 Nicotiana tabacum HOM05D004928 ORTHO05D005901 2.4e-47 193.0 206 46.1
Potri.003G154500 Populus trichocarpa HOM05D004928 ORTHO05D005901 3.2e-47 192.6 214 46.7
A09p21300 Brassica napus HOM05D004928 ORTHO05D005901 7.1e-47 191.4 211 49.3
BraA09t37735Z Brassica rapa HOM05D004928 ORTHO05D005901 7.1e-47 191.4 211 49.3
SGA_v2.0_scaffold171G38868 Striga asiatica HOM05D004928 ORTHO05D005901 2.7e-46 189.5 179 50.8
BcaC04g21818 Brassica carinata HOM05D004928 ORTHO05D005901 3.5e-46 189.1 211 48.3
C09p27080 Brassica napus HOM05D004928 ORTHO05D005901 3.5e-46 189.1 211 48.3
BolC9t55592H Brassica oleracea HOM05D004928 ORTHO05D005901 3.5e-46 189.1 211 48.3
DCAR_007776 Daucus carota HOM05D004928 ORTHO05D005901 1.0e-45 187.6 211 44.5
MSTRG.16373 Avicennia marina HOM05D004928 ORTHO05D005901 5.1e-45 185.3 211 45.0
Pp3c2_4490 Physcomitrium patens HOM05D004928 ORTHO05D005901 2.5e-44 183.0 218 43.1
Zm00001eb389800 Zea mays HOM05D004928 ORTHO05D005901 7.4e-44 181.4 211 43.6
Os06g0665100 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 9.6e-44 181.0 211 44.1
Ca_01986_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 1.6e-43 180.3 198 48.0
Ca_01982_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 2.8e-43 179.5 198 49.0
AagrBONN_evm.TU.Sc2ySwM_228.308 Anthoceros agrestis HOM05D004928 ORTHO05D005901 6.2e-43 178.3 208 43.8
Mapoly0113s0023 Marchantia polymorpha HOM05D004928 ORTHO05D005901 1.4e-42 177.2 217 41.9
Phvul.009G243000 Phaseolus vulgaris HOM05D004928 ORTHO05D005901 1.4e-42 177.2 193 45.1
Haze_05290 Corylus avellana HOM05D004928 ORTHO05D005901 6.9e-42 174.9 197 51.3
Sabra03G0111800 Salix brachista HOM05D004928 ORTHO05D005901 6.9e-42 174.9 276 36.2
SMO351G0551 Selaginella moellendorffii HOM05D004928 ORTHO05D005901 3.4e-41 172.6 207 42.5
Pp3c17_20220 Physcomitrium patens HOM05D004928 ORTHO05D005901 8.4e-40 167.9 208 41.3
Sopen02g026420 Solanum pennellii HOM05D004928 ORTHO05D005901 1.9e-39 166.8 209 39.2
Pp3c8_22630 Physcomitrium patens HOM05D004928 ORTHO05D005901 3.0e-37 159.5 206 40.8
CSS0044663 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 2.5e-36 156.4 170 46.5
Haze_05274 Corylus avellana HOM05D004928 ORTHO05D005901 1.4e-34 150.6 118 64.4
PGSC0003DMG400007327 Solanum tuberosum HOM05D004928 ORTHO05D005901 2.4e-34 149.8 211 36.0
TAR626G1771 Trochodendron aralioides HOM05D004928 ORTHO05D005901 6.9e-34 148.3 112 63.4
Cpa.g.sc30.100 Carica papaya HOM05D004928 ORTHO05D005901 1.0e-32 144.4 86 74.4
CDE11G0920 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 1.0e-32 144.4 181 40.9
CDE05G3391 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 2.9e-32 142.9 181 40.3
Solyc02g081820.3 Solanum lycopersicum HOM05D004928 ORTHO05D005901 2.9e-32 142.9 209 35.4
Os02g0173600 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 3.3e-28 129.4 86 65.1
Dinv01021 Davidia involucrata HOM05D004928 ORTHO05D005901 9.6e-28 127.9 158 41.8
Haze_05293 Corylus avellana HOM05D004928 ORTHO05D005901 2.2e-19 100.1 70 65.7
Zm00001eb207070 Zea mays HOM05D004928 ORTHO05D005901 3.7e-19 99.4 187 35.8
Aa31LG9G8830 Aethionema arabicum HOM05D004928 ORTHO05D005901 8.2e-19 98.2 59 69.5
CBR_g46238 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-18 97.8 98 46.9
MD14G1109200 Malus domestica HOM05D004928 ORTHO05D005901 3.1e-18 96.3 46 87.0
Nn6g35246 Nelumbo nucifera HOM05D004928 ORTHO05D005901 9.1e-18 94.7 57 66.7
Nn2g13837 Nelumbo nucifera HOM05D004928 ORTHO05D005901 1.2e-17 94.4 57 64.9
TPR.G688 Trifolium pratense HOM05D004928 ORTHO05D005901 3.4e-17 92.8 68 60.3
Haze_05273 Corylus avellana HOM05D004928 ORTHO05D005901 3.8e-16 89.4 57 70.2
Ca_01984_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 7.2e-15 85.1 51 74.5
PRCOL_00004641 Prasinoderma coloniale HOM05D004928 ORTHO05D005901 2.6e-09 66.6 85 42.4
Haze_05268 Corylus avellana HOM05D004928 ORTHO05D005901 7.2e-07 58.5 41 65.9
Haze_02353 Corylus avellana HOM05D000141 ORTHO05D011061 2.7e-06 56.6 59 50.8


User provided reference genes

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