Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1243800 Malus domestica HOM05D005725 ORTHO05D007531 5.6e-308 1060.1 520 100.0
Prupe.4G119800 Prunus persica HOM05D005725 ORTHO05D007531 5.5e-239 830.9 520 79.8
RcHm_v2.0_Chr5g0021701 Rosa chinensis HOM05D005725 ORTHO05D007531 2.9e-203 712.2 520 70.0
FvH4_3g13240 Fragaria vesca HOM05D005725 ORTHO05D007531 3.3e-191 672.2 520 65.4
FAN11G2553 Fragaria x ananassa HOM05D005725 ORTHO05D007531 7.4e-175 617.8 509 63.1
FAN21G2681 Fragaria x ananassa HOM05D005725 ORTHO05D007531 7.4e-175 617.8 480 66.0
Dinv17876 Davidia involucrata HOM05D005725 ORTHO05D007531 1.1e-170 604.0 522 57.1
FAN16G0048 Fragaria x ananassa HOM05D005725 ORTHO05D007531 1.3e-168 597.0 474 65.8
CiPaw.10G107600 Carya illinoinensis HOM05D005725 ORTHO05D007531 3.3e-167 592.4 539 57.5
Cfa001153 Carpinus fangiana HOM05D005725 ORTHO05D007531 1.3e-160 570.5 466 61.6
CANSAT54G1139 Cannabis sativa HOM05D005725 ORTHO05D007531 1.6e-158 563.5 523 57.7
Potri.001G075300 Populus trichocarpa HOM05D005725 ORTHO05D007531 5.0e-155 552.0 522 55.6
FAN25G0714 Fragaria x ananassa HOM05D005725 ORTHO05D007531 1.9e-154 550.1 474 61.4
Nn7g38404 Nelumbo nucifera HOM05D005725 ORTHO05D007531 3.6e-153 545.8 529 52.9
GSVIVG01010083001 Vitis vinifera HOM05D005725 ORTHO05D007531 9.7e-151 537.7 518 53.1
Manes.03G071900 Manihot esculenta HOM05D005725 ORTHO05D007531 3.4e-148 529.3 525 53.1
MELO3C007000.2 Cucumis melo HOM05D005725 ORTHO05D007531 1.9e-146 523.5 518 51.9
TWI38G1126 Tripterygium wilfordii HOM05D005725 ORTHO05D007531 9.7e-143 511.1 517 53.0
Thecc.02G002000 Theobroma cacao HOM05D005725 ORTHO05D007531 7.7e-140 501.5 524 51.7
Lalb_Chr18g0051971 Lupinus albus HOM05D005725 ORTHO05D007531 7.2e-138 495.0 522 51.9
Sabra01G0053700 Salix brachista HOM05D005725 ORTHO05D007531 4.1e-133 479.2 648 44.3
Eucgr.D00006 Eucalyptus grandis HOM05D005725 ORTHO05D007531 1.6e-132 477.2 518 50.0
QL11p011022 Quercus lobata HOM05D005725 ORTHO05D007531 1.6e-132 477.2 884 36.8
Glyma.15G155900 Glycine max HOM05D005725 ORTHO05D007531 1.7e-131 473.8 518 51.7
Duzib132G0485 Durio zibethinus HOM05D005725 ORTHO05D007531 2.9e-131 473.0 522 50.0
ClCG01G025890 Citrullus lanatus HOM05D005725 ORTHO05D007531 5.0e-131 472.2 495 51.1
COL.COLO4_25036 Corchorus olitorius HOM05D005725 ORTHO05D007531 6.5e-131 471.9 518 49.6
Phvul.009G244300 Phaseolus vulgaris HOM05D005725 ORTHO05D007531 6.5e-131 471.9 519 50.7
Aqoxy1G01377 Aquilegia oxysepala HOM05D005725 ORTHO05D007531 8.5e-131 471.5 525 48.8
Medtr2g437810 Medicago truncatula HOM05D005725 ORTHO05D007531 1.9e-130 470.3 521 48.8
Atru.chr10.248 Acer truncatum HOM05D005725 ORTHO05D007531 1.0e-128 464.5 520 49.6
Lj6g0004794 Lotus japonicus HOM05D005725 ORTHO05D007531 1.4e-128 464.2 523 49.7
VMungo1309G0521 Vigna mungo HOM05D005725 ORTHO05D007531 1.4e-128 464.2 517 49.1
Glyma.09G048600 Glycine max HOM05D005725 ORTHO05D007531 1.5e-127 460.7 518 51.0
Sopen01g016500 Solanum pennellii HOM05D005725 ORTHO05D007531 2.0e-127 460.3 517 48.4
Psat1g151080 Pisum sativum HOM05D005725 ORTHO05D007531 3.7e-126 456.1 528 47.7
TPR.G30931 Trifolium pratense HOM05D005725 ORTHO05D007531 3.7e-126 456.1 515 48.5
Solyc01g021640.3 Solanum lycopersicum HOM05D005725 ORTHO05D007531 3.1e-125 453.0 517 47.4
arahy.Tifrunner.gnm1.ann1.2M6VYA Arachis hypogaea HOM05D005725 ORTHO05D007531 3.5e-124 449.5 526 48.1
Peaxi162Scf00378g00520 Petunia axillaris HOM05D005725 ORTHO05D007531 7.7e-124 448.4 517 48.4
Gorai.007G055200 Gossypium raimondii HOM05D005725 ORTHO05D007531 8.0e-121 438.3 522 48.3
CsaV3_6G053120 Cucumis sativus L. HOM05D005725 ORTHO05D007531 3.0e-120 436.4 428 52.1
Gohir.D11G050800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 3.0e-120 436.4 522 48.1
Gohir.A11G047200 Gossypium hirsutum HOM05D005725 ORTHO05D007531 6.8e-120 435.3 522 47.5
Cc09_g04730 Coffea canephora HOM05D005725 ORTHO05D007531 1.5e-119 434.1 528 44.9
ECA232G4493 Erigeron canadensis HOM05D005725 ORTHO05D007531 2.8e-118 429.9 522 46.9
MSTRG.16376 Avicennia marina HOM05D005725 ORTHO05D007531 5.4e-117 425.6 518 45.4
DCAR_001262 Daucus carota HOM05D005725 ORTHO05D007531 1.2e-116 424.5 531 46.0
AL6G28440 Arabidopsis lyrata HOM05D005725 ORTHO05D007531 1.6e-116 424.1 514 45.3
Carub.0006s1558 Capsella rubella HOM05D005725 ORTHO05D007531 1.1e-114 417.9 514 46.5
PGR004G2791 Punica granatum HOM05D005725 ORTHO05D007531 5.6e-114 415.6 523 46.1
TAR626G0027 Trochodendron aralioides HOM05D005725 ORTHO05D007531 1.4e-112 411.0 360 56.4
HanXRQChr09g0257851 Helianthus annuus HOM05D005725 ORTHO05D007531 1.8e-112 410.6 531 44.3
PSO541G5061 Papaver somniferum HOM05D005725 ORTHO05D007531 4.4e-111 406.0 461 49.0
Ah.03g147910 Amaranthus hybridus HOM05D005725 ORTHO05D007531 1.7e-110 404.1 522 45.0
AUR62003571 Chenopodium quinoa HOM05D005725 ORTHO05D007531 2.9e-110 403.3 524 44.7
Thhalv10015915m.g Eutrema salsugineum HOM05D005725 ORTHO05D007531 8.3e-110 401.7 521 44.3
A02p04160 Brassica napus HOM05D005725 ORTHO05D007531 1.8e-109 400.6 535 43.7
BcaC03g18554 Brassica carinata HOM05D005725 ORTHO05D007531 9.2e-109 398.3 530 44.3
BolC2t06810H Brassica oleracea HOM05D005725 ORTHO05D007531 9.2e-109 398.3 529 44.2
C02p09010 Brassica napus HOM05D005725 ORTHO05D007531 1.2e-108 397.9 531 44.1
AT5G17370 Arabidopsis thaliana HOM05D005725 ORTHO05D007531 2.7e-108 396.7 535 43.2
BraA02t05379Z Brassica rapa HOM05D005725 ORTHO05D007531 5.9e-108 395.6 527 44.2
CARHR195840 Cardamine hirsuta HOM05D005725 ORTHO05D007531 3.9e-107 392.9 528 45.1
Aa31LG11G12260 Aethionema arabicum HOM05D005725 ORTHO05D007531 1.1e-106 391.3 513 46.2
BcaB05g23263 Brassica carinata HOM05D005725 ORTHO05D007531 5.6e-106 389.0 533 43.7
Ca_02400_v3 Cicer arietinum L. HOM05D005725 ORTHO05D007531 5.6e-106 389.0 529 44.4
Sp6g26850 Schrenkiella parvula HOM05D005725 ORTHO05D007531 5.6e-106 389.0 525 44.2
Migut.M02028 Erythranthe guttata HOM05D005725 ORTHO05D007531 7.3e-106 388.7 517 42.2
vmacro03566 Vaccinium macrocarpon HOM05D005725 ORTHO05D007531 2.8e-105 386.7 664 37.7
SalBow8G4963 Salvia bowleyana HOM05D005725 ORTHO05D007531 8.9e-104 381.7 519 44.1
arahy.Tifrunner.gnm1.ann1.GBFD5K Arachis hypogaea HOM05D005725 ORTHO05D007531 1.4e-101 374.4 445 47.9
Hund26771 Selenicereus undatus HOM05D005725 ORTHO05D007531 1.3e-99 367.9 475 44.0
Zm00001eb298410 Zea mays HOM05D005725 ORTHO05D007531 1.2e-97 361.3 522 41.2
ATR0794G001 Amborella trichopoda HOM05D005725 ORTHO05D007531 1.7e-94 350.9 524 39.5
Sed0022851 Sechium edule HOM05D005725 ORTHO05D007531 2.2e-94 350.5 412 45.9
HPP92_000831 Vanilla planifolia HOM05D005725 ORTHO05D007531 2.9e-94 350.1 527 38.5
AUR62017886 Chenopodium quinoa HOM05D005725 ORTHO05D007531 8.3e-94 348.6 523 40.3
arahy.Tifrunner.gnm1.ann1.G9C5AI Arachis hypogaea HOM05D005725 ORTHO05D007531 7.1e-93 345.5 445 45.8
Os07g0108000 Oryza sativa ssp. japonica HOM05D005725 ORTHO05D007531 4.6e-92 342.8 535 37.9
Ciclev10015389m.g Citrus clementina HOM05D005725 ORTHO05D007531 9.5e-90 335.1 405 47.4
Nitab4.5_0001484g0010 Nicotiana tabacum HOM05D005725 ORTHO05D007531 9.5e-90 335.1 371 50.1
Haze_05198 Corylus avellana HOM05D005725 ORTHO05D007531 3.6e-89 333.2 273 63.0
Nitab4.5_0000253g0020 Nicotiana tabacum HOM05D005725 ORTHO05D007531 2.3e-88 330.5 374 48.7
RcHm_v2.0_Chr5g0021601 Rosa chinensis HOM05D005725 ORTHO05D007531 4.9e-86 322.8 286 60.5
Lsat_1_v5_gn_8_107401 Lactuca sativa HOM05D005725 ORTHO05D007531 4.0e-80 303.1 401 43.1
CSS0030006 Camellia sinensis var. sinensis HOM05D005725 ORTHO05D007531 1.4e-77 294.7 485 39.4
Pp3c6_29180 Physcomitrium patens HOM05D005725 ORTHO05D007531 5.4e-69 266.2 554 33.4
DCAR_004356 Daucus carota HOM05D005725 ORTHO05D007531 3.5e-68 263.5 467 37.0
SHI12770 Sapria himalayana HOM05D005725 ORTHO05D000023 6.6e-67 259.2 337 44.8
Duzib052G0524 Durio zibethinus HOM05D005725 ORTHO05D007531 5.5e-61 239.6 304 44.4
DCAR_004355 Daucus carota HOM05D005725 ORTHO05D007531 3.3e-58 230.3 462 32.9
Atru.chr2.2825 Acer truncatum HOM05D005725 ORTHO05D007531 1.4e-56 224.9 344 39.8
RcHm_v2.0_Chr5g0021611 Rosa chinensis HOM05D005725 ORTHO05D007531 4.6e-52 209.9 170 62.9
Sc05g0005240 Simmondsia chinensis HOM05D005725 ORTHO05D007531 2.3e-51 207.6 310 39.4
Haze_05199 Corylus avellana HOM05D005725 ORTHO05D007531 6.7e-51 206.1 262 45.0
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 3.3e-50 203.8 259 45.2
Mapoly0033s0026 Marchantia polymorpha HOM05D005725 ORTHO05D007531 4.2e-45 186.8 507 29.6
CDE06G0984 Ceratophyllum demersum HOM05D005725 ORTHO05D007531 7.4e-42 176.0 281 38.1
Potri.003G155900 Populus trichocarpa HOM05D005725 ORTHO05D007531 3.1e-40 170.6 150 60.7
Ciclev10017729m.g Citrus clementina HOM05D005725 ORTHO05D007531 3.9e-35 153.7 115 63.5
EL10Ac6g15292 Beta vulgaris HOM05D005725 ORTHO05D007531 2.6e-34 151.0 139 54.0
ECA232G1808 Erigeron canadensis HOM05D005725 ORTHO05D007531 4.4e-34 150.2 311 34.7
TAR626G0843 Trochodendron aralioides HOM05D005725 ORTHO05D007531 7.4e-34 149.4 134 56.0
CBR_g22873 Chara braunii HOM05D005725 ORTHO05D007531 5.9e-31 139.8 576 25.2
Oeu005615.1 Olea europaea HOM05D000039 ORTHO05D005263 5.9e-31 139.8 103 59.2
AagrBONN_evm.TU.Sc2ySwM_368.2823 Anthoceros agrestis HOM05D005725 ORTHO05D007531 3.9e-27 127.1 532 24.6
SMO230G0054 Selaginella moellendorffii HOM05D005725 ORTHO05D007531 5.7e-26 123.2 255 32.2
SGA_v2.0_scaffold423G51459 Striga asiatica HOM05D005725 ORTHO05D007531 5.7e-26 123.2 208 36.1
A03p08350 Brassica napus HOM05D005725 ORTHO05D007531 2.6e-23 114.4 255 35.3
SEGI_40606 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 2.5e-21 107.8 136 44.1
Oeu013488.1 Olea europaea HOM05D005725 ORTHO05D007531 5.5e-21 106.7 172 35.5
BcaC05g29074 Brassica carinata HOM05D005725 ORTHO05D007531 4.8e-17 93.6 135 38.5
unitig_746.g26585 Utricularia gibba HOM05D005725 ORTHO05D007531 5.3e-16 90.1 146 35.6
BolC5t33962H Brassica oleracea HOM05D005725 ORTHO05D007531 1.6e-15 88.6 122 39.3
CiPaw.09G139700 Carya illinoinensis HOM05D005725 ORTHO05D007531 4.5e-15 87.0 141 40.4
Dinv31193 Davidia involucrata HOM05D005725 ORTHO05D020553 4.5e-15 87.0 92 47.8
C09p34670 Brassica napus HOM05D005725 ORTHO05D007531 9.4e-13 79.3 138 33.3
BolC9t56313H Brassica oleracea HOM05D005725 ORTHO05D007531 9.4e-13 79.3 138 33.3
BcaC04g22388 Brassica carinata HOM05D005725 ORTHO05D007531 8.0e-12 76.3 118 38.1
C09p19870 Brassica napus HOM05D005725 ORTHO05D007531 8.0e-12 76.3 118 38.1
BolC9t54892H Brassica oleracea HOM05D005725 ORTHO05D007531 8.0e-12 76.3 118 38.1
Atru.chr1.2967 Acer truncatum HOM05D005725 ORTHO05D007531 2.3e-11 74.7 109 44.0
Glyma.06G212700 Glycine max HOM05D005725 ORTHO05D007531 2.3e-11 74.7 74 51.4
SHI12772 Sapria himalayana HOM05D005725 ORTHO05D007531 3.4e-10 70.9 76 43.4
Atru.chr3.3228 Acer truncatum HOM05D000154 ORTHO05D000092 7.0e-08 63.2 69 43.5
C05p52870 Brassica napus HOM05D005725 ORTHO05D007531 5.9e-07 60.1 137 29.2
MD10G1225700 Malus domestica HOM05D005725 ORTHO05D247335 1.0e-06 59.3 27 88.9


User provided reference genes

Program Settings