Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1240900 Malus domestica HOM05D007449 ORTHO05D009504 1.5e-89 332.8 165 100.0
Prupe.4G124700 Prunus persica HOM05D007449 ORTHO05D009504 5.0e-77 291.2 159 91.8
FAN21G0170 Fragaria x ananassa HOM05D007449 ORTHO05D009504 8.8e-74 280.4 160 86.2
FvH4_3g13790 Fragaria vesca HOM05D007449 ORTHO05D009504 2.6e-73 278.9 160 85.6
RcHm_v2.0_Chr5g0022981 Rosa chinensis HOM05D007449 ORTHO05D009504 4.4e-73 278.1 156 86.5
FAN11G1945 Fragaria x ananassa HOM05D007449 ORTHO05D009504 7.5e-73 277.3 161 86.3
FAN16G1652 Fragaria x ananassa HOM05D007449 ORTHO05D009504 7.0e-71 270.8 153 86.9
GSVIVG01036691001 Vitis vinifera HOM05D007449 ORTHO05D009504 2.9e-69 265.4 165 78.2
Sed0001463 Sechium edule HOM05D007449 ORTHO05D009504 3.8e-69 265.0 161 79.5
Dinv42450 Davidia involucrata HOM05D007449 ORTHO05D009504 3.3e-68 261.9 166 77.7
CANSAT56G2387 Cannabis sativa HOM05D007449 ORTHO05D009504 9.5e-68 260.4 157 79.6
CsaV3_6G013330 Cucumis sativus L. HOM05D007449 ORTHO05D009504 2.1e-67 259.2 154 80.5
ClCG02G018850 Citrullus lanatus HOM05D007449 ORTHO05D009504 2.8e-67 258.8 166 75.9
MELO3C019608.2 Cucumis melo HOM05D007449 ORTHO05D009504 4.7e-67 258.1 167 76.0
HanXRQChr11g0335831 Helianthus annuus HOM05D007449 ORTHO05D009504 1.4e-66 256.5 153 79.7
Nn1g09860 Nelumbo nucifera HOM05D007449 ORTHO05D009504 1.4e-66 256.5 153 79.1
ECA236G3627 Erigeron canadensis HOM05D007449 ORTHO05D009504 1.8e-66 256.1 165 75.2
Ciclev10006094m.g Citrus clementina HOM05D007449 ORTHO05D009504 2.3e-66 255.8 156 80.8
Atru.chr1.9 Acer truncatum HOM05D007449 ORTHO05D009504 6.8e-66 254.2 152 78.9
Lsat_1_v5_gn_7_111001 Lactuca sativa HOM05D007449 ORTHO05D009504 1.2e-65 253.4 153 79.7
Sabra10G0135300 Salix brachista HOM05D007449 ORTHO05D009504 1.2e-65 253.4 166 74.1
CiPaw.15G111100 Carya illinoinensis HOM05D007449 ORTHO05D009504 2.0e-65 252.7 165 76.4
Glyma.08G160000 Glycine max HOM05D007449 ORTHO05D009504 2.6e-65 252.3 169 74.0
CSS0049228 Camellia sinensis var. sinensis HOM05D007449 ORTHO05D009504 4.4e-65 251.5 166 72.3
Glyma.15G266900 Glycine max HOM05D007449 ORTHO05D009504 9.8e-65 250.4 169 72.8
THA.LOC104812400 Tarenaya hassleriana HOM05D007449 ORTHO05D009504 1.3e-64 250.0 153 77.1
Hma1.2p1_1417F.1_g282110 Hydrangea macrophylla HOM05D007449 ORTHO05D009504 2.2e-64 249.2 166 74.1
SEGI_20644 Sequoiadendron giganteum HOM05D007449 ORTHO05D009504 3.7e-64 248.4 153 76.5
CDE02G1458 Ceratophyllum demersum HOM05D001125 ORTHO05D003189 4.9e-64 248.1 152 77.0
MBI02_g42634_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 6.4e-64 247.7 154 77.3
Aqoxy5G02136 Aquilegia oxysepala HOM05D007449 ORTHO05D009504 8.3e-64 247.3 159 74.8
Potri.010G175600 Populus trichocarpa HOM05D007449 ORTHO05D009504 2.4e-63 245.7 166 72.3
COL.COLO4_32270 Corchorus olitorius HOM05D007449 ORTHO05D009504 1.2e-62 243.4 153 75.2
Duzib213G0878 Durio zibethinus HOM05D007449 ORTHO05D009504 1.2e-62 243.4 153 75.2
Rhsim10G0133000 Rhododendron simsii HOM05D007449 ORTHO05D009504 2.0e-62 242.7 195 65.1
TAR629G0115 Trochodendron aralioides HOM05D007449 ORTHO05D009504 3.5e-62 241.9 188 66.0
Manes.16G050159 Manihot esculenta HOM05D007449 ORTHO05D009504 7.8e-62 240.7 160 75.6
Cfa017774 Carpinus fangiana HOM05D007449 ORTHO05D009504 2.3e-61 239.2 151 78.1
Peaxi162Scf00124g01733 Petunia axillaris HOM05D007449 ORTHO05D009504 3.0e-61 238.8 168 70.2
Gohir.A13G127500 Gossypium hirsutum HOM05D007449 ORTHO05D009504 3.9e-61 238.4 153 73.2
arahy.Tifrunner.gnm1.ann1.4RN51I Arachis hypogaea HOM05D007449 ORTHO05D009504 5.0e-61 238.0 153 73.9
arahy.Tifrunner.gnm1.ann1.VWXD6N Arachis hypogaea HOM05D007449 ORTHO05D009504 5.0e-61 238.0 153 73.9
Migut.H01650 Erythranthe guttata HOM05D007449 ORTHO05D009504 6.6e-61 237.7 166 68.7
Gohir.D13G131200 Gossypium hirsutum HOM05D007449 ORTHO05D009504 1.1e-60 236.9 153 72.5
Psat6g047080 Pisum sativum HOM05D007449 ORTHO05D009504 1.9e-60 236.1 152 74.3
SGA_v2.0_scaffold49G18211 Striga asiatica HOM05D007449 ORTHO05D009504 1.9e-60 236.1 163 71.2
Medtr1g046590 Medicago truncatula HOM05D007449 ORTHO05D009504 2.5e-60 235.7 159 73.0
Nitab4.5_0006598g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 2.5e-60 235.7 165 69.1
HPP92_008133 Vanilla planifolia HOM05D007449 ORTHO05D009504 2.5e-60 235.7 159 71.1
Nitab4.5_0005124g0020 Nicotiana tabacum HOM05D007449 ORTHO05D009504 5.6e-60 234.6 165 68.5
HPP92_008185 Vanilla planifolia HOM05D007449 ORTHO05D009504 5.6e-60 234.6 159 70.4
Gorai.013G147200 Gossypium raimondii HOM05D007449 ORTHO05D009504 7.3e-60 234.2 153 71.9
Lalb_Chr01g0015631 Lupinus albus HOM05D007449 ORTHO05D009504 9.5e-60 233.8 159 71.7
PGSC0003DMG400013314 Solanum tuberosum HOM05D007449 ORTHO05D009504 2.1e-59 232.6 153 73.2
TWI38G0722 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 2.1e-59 232.6 171 66.1
TWI38G2117 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 2.1e-59 232.6 171 66.1
Os01g0679600 Oryza sativa ssp. japonica HOM05D007449 ORTHO05D009504 2.8e-59 232.3 166 71.1
ATR0109G018 Amborella trichopoda HOM05D007449 ORTHO05D009504 4.7e-59 231.5 156 73.1
Solyc11g011610.2 Solanum lycopersicum HOM05D007449 ORTHO05D009504 6.2e-59 231.1 153 72.5
Zm00001eb156770 Zea mays HOM05D007449 ORTHO05D009504 6.2e-59 231.1 168 67.3
CAN.G222.124 Capsicum annuum HOM05D007449 ORTHO05D009504 1.4e-58 229.9 153 73.2
Thhalv10019230m.g Eutrema salsugineum HOM05D007449 ORTHO05D009504 1.4e-58 229.9 164 68.3
Solyc11g011620.3 Solanum lycopersicum HOM05D007449 ORTHO05D009504 1.4e-58 229.9 151 72.8
Sopen11g006460 Solanum pennellii HOM05D007449 ORTHO05D009504 1.4e-58 229.9 153 72.5
AT1G79260 Arabidopsis thaliana HOM05D007449 ORTHO05D009504 2.3e-58 229.2 153 71.2
Nitab4.5_0001438g0030 Nicotiana tabacum HOM05D007449 ORTHO05D009504 2.3e-58 229.2 165 66.7
Oeu002792.1 Olea europaea HOM05D007449 ORTHO05D009775 2.3e-58 229.2 157 68.8
MSTRG.13092 Avicennia marina HOM05D007449 ORTHO05D009504 4.0e-58 228.4 158 69.6
Carub.0002s2613 Capsella rubella HOM05D007449 ORTHO05D009504 5.2e-58 228.0 153 71.9
PGR031G0327 Punica granatum HOM05D007449 ORTHO05D009504 6.8e-58 227.6 171 69.0
vmacro12790 Vaccinium macrocarpon HOM05D007449 ORTHO05D009504 6.8e-58 227.6 238 53.4
TPR.G11303 Trifolium pratense HOM05D007449 ORTHO05D009504 1.2e-57 226.9 152 71.1
BcaB05g25191 Brassica carinata HOM05D007449 ORTHO05D009504 2.6e-57 225.7 160 68.1
Sp5g34340 Schrenkiella parvula HOM05D007449 ORTHO05D009504 2.6e-57 225.7 156 70.5
Cc08_g13080 Coffea canephora HOM05D007449 ORTHO05D009504 5.8e-57 224.6 169 66.3
BraA02t07273Z Brassica rapa HOM05D007449 ORTHO05D009504 7.5e-57 224.2 160 66.9
BolC2t09646H Brassica oleracea HOM05D007449 ORTHO05D009504 1.3e-56 223.4 160 66.2
BcaC03g15880 Brassica carinata HOM05D007449 ORTHO05D009504 1.7e-56 223.0 160 66.9
C02p36470 Brassica napus HOM05D007449 ORTHO05D009504 2.2e-56 222.6 160 66.9
AL2G39860 Arabidopsis lyrata HOM05D007449 ORTHO05D009504 3.7e-56 221.9 156 69.2
A02p22730 Brassica napus HOM05D007449 ORTHO05D009504 6.4e-56 221.1 160 66.2
AagrBONN_evm.TU.Sc2ySwM_362.2319 Anthoceros agrestis HOM05D007449 ORTHO05D009504 1.4e-55 219.9 152 66.4
SMO364G0724 Selaginella moellendorffii HOM05D007449 ORTHO05D009504 6.0e-54 214.5 167 62.9
Actinidia33338 Actinidia chinensis HOM05D007449 ORTHO05D009504 2.3e-53 212.6 133 78.9
Aa31LG4G1730 Aethionema arabicum HOM05D007449 ORTHO05D009504 7.3e-52 207.6 171 60.2
Phvul.005G043600 Phaseolus vulgaris HOM05D007449 ORTHO05D009504 3.6e-51 205.3 165 63.6
QL04p096242 Quercus lobata HOM05D007449 ORTHO05D009504 3.1e-50 202.2 114 83.3
Eucgr.F04482 Eucalyptus grandis HOM05D007449 ORTHO05D009504 5.2e-50 201.4 154 63.6
QL04p096050 Quercus lobata HOM05D007449 ORTHO05D009504 8.9e-50 200.7 113 83.2
Mapoly0054s0111 Marchantia polymorpha HOM05D007449 ORTHO05D009504 4.4e-49 198.4 150 61.3
FAN25G3406 Fragaria x ananassa HOM05D007449 ORTHO05D009504 1.9e-47 193.0 108 88.0
arahy.Tifrunner.gnm1.ann1.FIRH26 Arachis hypogaea HOM05D007449 ORTHO05D009504 7.1e-47 191.0 125 72.8
Nitab4.5_0009898g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 3.5e-46 188.7 164 58.5
Haze_18462 Corylus avellana HOM05D007449 ORTHO05D009504 6.0e-46 188.0 115 78.3
Pp3c6_12570 Physcomitrium patens HOM05D007449 ORTHO05D009504 8.6e-45 184.1 114 71.9
Ca_03327_v3 Cicer arietinum L. HOM05D007449 ORTHO05D009504 1.3e-40 170.2 110 75.5
MBI02_g17887_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 2.7e-38 162.5 154 58.4
DCAR_013701 Daucus carota HOM05D007449 ORTHO05D009504 1.0e-37 160.6 89 80.9
Lj2A6T27 Lonicera japonica HOM05D007449 ORTHO05D009504 1.2e-35 153.7 90 78.9
Nitab4.5_0001650g0100 Nicotiana tabacum HOM05D000057 ORTHO05D000021 3.6e-27 125.6 119 55.5
Aa31LG4G1740 Aethionema arabicum HOM05D007449 ORTHO05D009504 3.4e-25 119.0 155 42.6
Nitab4.5_0007284g0070 Nicotiana tabacum HOM05D000057 ORTHO05D000021 3.6e-19 99.0 63 74.6
TPR.G35695 Trifolium pratense HOM05D000290 ORTHO05D044376 3.4e-17 92.4 118 48.3
MBI02_g30541_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 3.0e-13 79.3 81 59.3
Gohir.D03G088000 Gossypium hirsutum HOM05D007449 ORTHO05D000032 1.5e-12 77.0 67 56.7
Glyma.14G034600 Glycine max HOM05D007449 ORTHO05D009504 3.1e-10 69.3 67 50.7


User provided reference genes

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