Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1234800 Malus domestica HOM05D001231 ORTHO05D001012 6.0e-38 160.2 74 100.0
Prupe.4G131400 Prunus persica HOM05D001231 ORTHO05D001012 1.3e-21 105.9 72 63.9
FvH4_3g14600 Fragaria vesca HOM05D001231 ORTHO05D001012 2.3e-21 105.1 62 72.6
FAN16G3645 Fragaria x ananassa HOM05D001231 ORTHO05D001012 2.3e-21 105.1 62 72.6
FAN11G1290 Fragaria x ananassa HOM05D001231 ORTHO05D001012 6.6e-21 103.6 61 72.1
RcHm_v2.0_Chr5g0024081 Rosa chinensis HOM05D001231 ORTHO05D001012 2.8e-19 98.2 63 69.8
MD05G1234500 Malus domestica HOM05D001231 ORTHO05D001012 3.6e-19 97.8 72 59.7
RcHm_v2.0_Chr5g0024091 Rosa chinensis HOM05D001231 ORTHO05D001012 1.4e-18 95.9 62 64.5
FAN25G0202 Fragaria x ananassa HOM05D001231 ORTHO05D001012 3.1e-18 94.7 63 65.1
RcHm_v2.0_Chr5g0024061 Rosa chinensis HOM05D001231 ORTHO05D001012 3.1e-18 94.7 62 64.5
FAN16G3227 Fragaria x ananassa HOM05D001231 ORTHO05D001012 4.0e-18 94.4 62 66.1
FvH4_3g14620 Fragaria vesca HOM05D001231 ORTHO05D001012 2.6e-17 91.7 63 65.1
FAN21G3240 Fragaria x ananassa HOM05D001231 ORTHO05D001012 5.4e-15 84.0 54 64.8
FAN25G0988 Fragaria x ananassa HOM05D001231 ORTHO05D001012 1.8e-13 79.0 60 60.0
FAN16G1567 Fragaria x ananassa HOM05D001231 ORTHO05D001012 2.3e-13 78.6 61 57.4
FAN21G1429 Fragaria x ananassa HOM05D020793 ORTHO05D025367 2.1e-11 72.0 56 60.7
Migut.F00873 Erythranthe guttata HOM05D001231 ORTHO05D001012 8.1e-11 70.1 63 42.9
Nn7g38263 Nelumbo nucifera HOM05D001231 ORTHO05D001012 2.6e-09 65.1 63 41.3
Nn7g38191 Nelumbo nucifera HOM05D001231 ORTHO05D001012 7.6e-09 63.5 63 41.3
Nitab4.5_0001882g0020 Nicotiana tabacum HOM05D009059 ORTHO05D011207 4.9e-08 60.8 58 43.1
SalBow6G2289 Salvia bowleyana HOM05D001231 ORTHO05D001012 4.9e-08 60.8 63 42.9
Actinidia39325 Actinidia chinensis HOM05D001231 ORTHO05D001012 8.4e-08 60.1 66 36.4
PGR102G0532 Punica granatum HOM05D001231 ORTHO05D001012 1.4e-07 59.3 63 39.7
Cc02_g09620 Coffea canephora HOM05D018349 ORTHO05D011207 3.2e-07 58.2 61 42.6
Manes.07G074400 Manihot esculenta HOM05D001231 ORTHO05D001012 3.2e-07 58.2 63 38.1
Nitab4.5_0003765g0030 Nicotiana tabacum HOM05D009059 ORTHO05D011207 3.2e-07 58.2 49 51.0
FvH4_3g14470 Fragaria vesca HOM05D020793 ORTHO05D025367 5.5e-07 57.4 66 43.9
Nn7g38190 Nelumbo nucifera HOM05D001231 ORTHO05D001012 7.1e-07 57.0 63 41.3
Sopen10g004450 Solanum pennellii HOM05D018601 ORTHO05D018052 7.1e-07 57.0 51 49.0
Manes.05G122400 Manihot esculenta HOM05D001231 ORTHO05D001012 9.3e-07 56.6 63 38.1
Actinidia36588 Actinidia chinensis HOM05D001231 ORTHO05D001012 1.2e-06 56.2 63 39.7
SGA_v2.0_scaffold7G03620 Striga asiatica HOM05D000870 ORTHO05D000715 1.2e-06 56.2 55 41.8
TWI75G0548 Tripterygium wilfordii HOM05D001231 ORTHO05D001012 1.2e-06 56.2 63 38.1
CiPaw.04G178300 Carya illinoinensis HOM05D001231 ORTHO05D001012 1.6e-06 55.8 63 38.1
Potri.T011200 Populus trichocarpa HOM05D001231 ORTHO05D001012 1.6e-06 55.8 63 38.1
Potri.T011201 Populus trichocarpa HOM05D001231 ORTHO05D001012 1.6e-06 55.8 63 38.1
FvH4_3g14460 Fragaria vesca HOM05D020793 ORTHO05D025367 2.1e-06 55.5 64 43.8
Gohir.D01G023520 Gossypium hirsutum HOM05D001231 ORTHO05D001012 2.1e-06 55.5 63 38.1
Gohir.D01G023526 Gossypium hirsutum HOM05D001231 ORTHO05D001012 2.1e-06 55.5 63 38.1
Gorai.002G029700 Gossypium raimondii HOM05D001231 ORTHO05D001012 2.1e-06 55.5 63 38.1
GSVIVG01000230001 Vitis vinifera HOM05D001231 ORTHO05D001012 2.1e-06 55.5 57 42.1
CDE04G2371 Ceratophyllum demersum HOM05D001231 ORTHO05D001012 2.7e-06 55.1 61 37.7
Prupe.1G201200 Prunus persica HOM05D001231 ORTHO05D001012 2.7e-06 55.1 63 38.1
SalBow8G2012 Salvia bowleyana HOM05D001231 ORTHO05D001012 2.7e-06 55.1 65 38.5
SalBow8G5419 Salvia bowleyana HOM05D001231 ORTHO05D001012 2.7e-06 55.1 65 38.5
Hund02692 Selenicereus undatus HOM05D001231 ORTHO05D001012 2.7e-06 55.1 63 38.1
TWI79G1670 Tripterygium wilfordii HOM05D001231 ORTHO05D001012 2.7e-06 55.1 63 38.1
EL10Ac5g10883 Beta vulgaris HOM05D001231 ORTHO05D001012 3.5e-06 54.7 62 38.7
EL10Ac5g10884 Beta vulgaris HOM05D001231 ORTHO05D001012 3.5e-06 54.7 50 46.0
Glyma.06G160400 Glycine max HOM05D001231 ORTHO05D001012 3.5e-06 54.7 63 36.5
EL10Ac5g10881 Beta vulgaris HOM05D001231 ORTHO05D001012 4.6e-06 54.3 50 44.0
EL10Ac5g10885 Beta vulgaris HOM05D001231 ORTHO05D001012 4.6e-06 54.3 50 44.0
Peaxi162Scf00376g00828 Petunia axillaris HOM05D001231 ORTHO05D001012 4.6e-06 54.3 64 37.5
Psat4g112360 Pisum sativum HOM05D001231 ORTHO05D001012 4.6e-06 54.3 63 34.9
CiPaw.04G178400 Carya illinoinensis HOM05D001231 ORTHO05D001012 6.0e-06 53.9 63 38.1
CDE07G0627 Ceratophyllum demersum HOM05D001231 ORTHO05D001012 6.0e-06 53.9 61 37.7
Nitab4.5_0001626g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 6.0e-06 53.9 53 43.4
Nitab4.5_0001626g0020 Nicotiana tabacum HOM05D009059 ORTHO05D011207 6.0e-06 53.9 53 43.4
Nitab4.5_0001882g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 6.0e-06 53.9 53 41.5
Nitab4.5_0005404g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 6.0e-06 53.9 53 43.4
Hund09739 Selenicereus undatus HOM05D001231 ORTHO05D001012 6.0e-06 53.9 64 40.6
Sopen09g029290 Solanum pennellii HOM05D018601 ORTHO05D018052 6.0e-06 53.9 51 47.1
MD00G1135500 Malus domestica HOM05D001231 ORTHO05D001012 7.9e-06 53.5 63 34.9
Medtr8g070790 Medicago truncatula HOM05D001231 ORTHO05D001012 7.9e-06 53.5 63 34.9


User provided reference genes

Program Settings