Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1731.1 880 100.0
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1581.6 880 92.8
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1450.6 878 84.7
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1393.6 898 81.6
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1369.8 899 80.2
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1363.2 890 80.8
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1354.0 922 78.3
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1350.9 890 80.2
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1350.5 914 79.0
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1342.4 888 76.9
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1330.1 888 76.9
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1321.2 884 76.6
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1315.1 897 73.9
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1308.5 920 72.8
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1303.1 934 72.1
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1295.4 895 76.3
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1291.6 892 75.9
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1290.0 870 75.6
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1290.0 890 73.7
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1288.9 890 74.7
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1286.9 890 74.6
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1286.2 890 74.5
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1282.3 892 74.8
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1280.4 886 73.1
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1277.7 895 73.1
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1274.6 894 72.7
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1268.8 889 73.2
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1265.8 873 74.9
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1263.4 889 74.5
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1262.3 891 72.2
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1262.3 909 73.7
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1261.1 859 74.3
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1258.8 893 71.8
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1246.5 889 72.4
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1244.6 901 71.7
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1241.9 889 71.2
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1241.1 902 72.6
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1237.2 888 71.2
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1235.7 887 71.0
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1232.2 889 71.9
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1229.2 892 70.7
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1229.2 887 72.2
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1222.6 899 70.6
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1222.6 893 70.9
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1217.6 890 70.2
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1217.2 889 70.4
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1216.8 887 71.6
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1212.6 883 70.3
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1212.6 898 69.3
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1210.7 894 70.2
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1209.1 922 68.8
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1206.0 917 68.5
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1202.6 903 70.0
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1201.8 874 70.4
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1197.2 892 68.7
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1195.3 890 70.0
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1191.8 882 68.8
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1190.6 947 67.2
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1190.3 890 69.0
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1189.5 919 68.3
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1188.3 902 69.2
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1187.6 887 68.7
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1187.6 896 68.9
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1184.5 892 69.5
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1184.1 891 68.4
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1182.2 877 69.8
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1181.8 887 69.8
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1180.6 880 68.4
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1176.0 900 68.7
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1175.2 907 68.8
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1172.1 888 71.2
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1165.6 888 67.1
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1161.7 892 70.0
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1161.0 886 67.7
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1159.4 923 66.1
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1156.7 923 65.9
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1153.7 893 67.6
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1150.6 891 68.6
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1149.0 899 66.7
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1148.3 905 66.1
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1147.9 881 68.1
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1146.7 879 67.9
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1146.0 901 67.0
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1144.0 753 76.0
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1144.0 919 65.6
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1143.6 887 67.9
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1143.3 898 66.5
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1140.2 886 67.7
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1140.2 901 65.6
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1139.4 912 65.6
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1122.1 895 66.0
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1117.4 878 65.6
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 0.0e+00 1113.6 896 64.7
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1113.2 888 65.7
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 0.0e+00 1111.3 895 65.9
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1111.3 905 65.7
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1110.5 889 65.5
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 0.0e+00 1107.8 896 66.4
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1100.9 879 65.6
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 0.0e+00 1099.0 893 65.3
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 0.0e+00 1095.1 885 66.2
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1094.7 897 64.2
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 0.0e+00 1094.3 894 65.0
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 0.0e+00 1094.3 901 64.2
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 0.0e+00 1090.9 902 64.0
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1090.1 890 64.6
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1088.2 909 65.0
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1087.4 902 63.9
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1083.9 899 64.3
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 0.0e+00 1083.9 892 65.2
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1083.2 903 63.9
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1075.8 864 65.2
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1075.1 906 63.2
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 5.4e-311 1070.8 950 60.9
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 1.5e-308 1062.8 901 64.4
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 2.1e-307 1058.9 770 70.0
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 1.0e-306 1056.6 851 65.0
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 1.2e-305 1053.1 811 67.1
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 7.8e-302 1040.4 930 61.1
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 6.8e-298 1027.3 880 63.2
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 2.3e-293 1012.3 882 61.0
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 1.9e-292 1009.2 853 64.9
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 1.2e-291 1006.5 879 61.7
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 3.6e-291 1005.0 899 60.6
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 2.1e-283 979.2 601 80.4
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 4.7e-283 978.0 971 55.9
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.8e-282 976.1 905 59.0
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.4e-279 966.5 902 58.9
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 5.8e-273 944.5 583 79.4
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 2.9e-272 942.2 880 59.9
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 9.9e-265 917.1 796 59.5
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 2.2e-264 916.0 921 55.8
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 4.5e-257 891.7 792 58.0
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 1.9e-252 876.3 876 54.5
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 8.2e-251 870.9 874 55.0
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 3.9e-245 852.0 863 54.0
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 1.1e-244 850.5 918 50.8
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 3.2e-239 832.4 782 56.5
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 5.5e-239 831.6 890 52.9
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 1.8e-234 816.6 794 55.3
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.1e-228 797.3 611 65.3
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 3.1e-226 789.3 595 70.1
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 6.3e-211 738.4 572 62.6
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 1.1e-207 727.6 861 46.5
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 5.7e-204 715.3 862 46.3
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 2.3e-200 703.4 632 54.9
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.2e-190 671.0 635 58.1
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 9.8e-188 661.4 613 53.2
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 7.0e-186 655.2 635 56.7
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 4.6e-177 625.9 587 56.7
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 4.7e-174 615.9 882 43.5
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 5.1e-144 516.2 568 47.5
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 1.7e-139 501.1 530 52.1
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 3.4e-132 476.9 428 59.1
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 3.8e-115 420.2 620 37.4
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.7e-110 404.8 512 46.5
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 5.9e-108 396.4 401 57.1
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 6.5e-107 392.9 499 46.7
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 1.2e-97 362.1 264 66.3
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 2.9e-91 340.9 691 32.0
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.2e-84 318.9 225 68.9
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 3.3e-82 310.8 264 59.5
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 1.3e-70 272.3 175 73.1
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 1.2e-65 255.8 520 30.4
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 4.1e-61 240.7 504 30.0
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 3.5e-60 237.7 156 75.6
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 1.6e-36 159.1 219 47.5
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 2.2e-30 138.7 370 34.6
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 2.9e-22 111.7 371 33.2
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 4.6e-20 104.4 125 50.4
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 3.9e-19 101.3 74 71.6
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 1.1e-18 99.8 73 61.6
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 8.2e-17 93.6 289 28.4
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 6.1e-12 77.4 74 58.1


User provided reference genes

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