Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1373.2 637 100.0
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1303.1 638 94.4
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1203.0 637 87.0
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1171.4 637 85.1
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 0.0e+00 1162.9 637 84.5
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1146.3 611 85.3
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1144.4 610 85.2
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1143.6 612 85.0
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 0.0e+00 1137.1 640 82.2
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 0.0e+00 1134.0 632 81.8
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 0.0e+00 1132.5 623 84.1
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 0.0e+00 1132.5 634 82.0
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1129.8 636 79.9
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 0.0e+00 1129.0 621 83.4
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 0.0e+00 1127.5 638 80.1
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1127.1 653 79.8
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 0.0e+00 1126.7 627 82.9
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 0.0e+00 1119.8 624 81.7
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 0.0e+00 1119.0 627 81.0
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1116.7 613 83.0
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 0.0e+00 1116.3 650 79.5
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1114.0 605 83.6
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1113.2 636 79.1
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 0.0e+00 1108.6 630 81.1
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 0.0e+00 1108.6 629 80.9
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 0.0e+00 1105.5 628 80.3
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1102.4 746 72.0
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1102.0 615 82.0
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 0.0e+00 1102.0 605 82.5
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 0.0e+00 1101.7 634 80.1
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 0.0e+00 1099.7 628 79.5
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 0.0e+00 1099.3 629 80.4
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 0.0e+00 1098.6 605 82.3
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 0.0e+00 1098.2 602 82.6
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1097.4 605 82.8
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 0.0e+00 1097.0 616 80.8
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 0.0e+00 1097.0 650 77.5
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 0.0e+00 1095.5 611 82.7
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 0.0e+00 1094.7 610 82.5
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 0.0e+00 1094.3 626 80.8
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 0.0e+00 1094.0 605 82.0
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1093.6 610 81.0
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 0.0e+00 1093.2 609 80.5
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 0.0e+00 1092.8 610 82.3
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1090.9 610 80.7
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 0.0e+00 1089.3 627 80.9
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 0.0e+00 1088.2 611 81.0
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 0.0e+00 1088.2 640 78.0
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1087.8 611 81.3
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 0.0e+00 1087.0 609 80.3
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 0.0e+00 1087.0 610 81.0
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 0.0e+00 1086.6 602 81.1
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 0.0e+00 1086.6 771 69.0
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1084.7 635 77.8
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1084.7 635 77.8
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1083.9 627 78.1
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1083.9 609 80.1
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1083.9 609 80.1
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1083.2 637 77.6
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 0.0e+00 1083.2 609 80.6
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 0.0e+00 1080.5 609 80.6
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 0.0e+00 1080.1 627 79.4
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 0.0e+00 1077.0 609 80.3
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1076.2 637 77.2
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 0.0e+00 1075.8 609 80.1
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 0.0e+00 1075.5 595 81.3
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 3.9e-311 1070.8 549 91.3
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 6.5e-311 1070.1 632 77.7
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 8.7e-311 1069.7 611 78.9
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 1.1e-310 1069.3 608 81.2
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 1.9e-310 1068.5 607 81.2
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 3.3e-310 1067.8 673 75.6
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 3.3e-310 1067.8 611 79.5
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 1.8e-308 1062.0 599 81.8
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 5.3e-308 1060.4 600 81.5
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 6.9e-308 1060.1 674 75.7
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 5.4e-305 1050.4 611 79.5
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 7.1e-305 1050.0 674 75.1
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 4.6e-304 1047.3 823 62.0
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 4.0e-300 1034.2 614 76.2
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 3.4e-299 1031.2 627 75.3
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 1.7e-298 1028.9 627 76.4
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 1.5e-291 1005.7 634 74.4
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 7.1e-289 996.9 557 82.4
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 1.1e-284 983.0 628 72.9
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 6.5e-282 973.8 605 75.4
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 4.8e-277 957.6 549 79.6
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 2.6e-275 951.8 563 78.7
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 2.9e-274 948.3 537 81.8
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 5.7e-270 934.1 579 75.8
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 2.0e-267 925.6 544 79.8
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 3.6e-264 914.8 520 81.7
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.0e-263 913.3 630 68.7
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 1.4e-263 912.9 586 73.5
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 2.8e-261 905.2 569 74.7
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 3.1e-260 901.7 640 67.5
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 5.5e-257 891.0 572 72.9
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.0e-255 886.7 607 70.0
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 9.8e-246 853.6 631 63.4
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 3.7e-245 851.7 611 63.7
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.9e-241 839.3 607 66.9
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.3e-229 800.0 635 60.2
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 4.3e-225 785.0 493 74.0
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 3.6e-224 781.9 608 59.7
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 2.3e-215 752.7 557 62.8
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 8.3e-213 744.2 449 78.0
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.9e-197 692.6 413 76.8
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 2.1e-187 659.8 466 68.0
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 2.1e-187 659.8 382 79.3
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 1.6e-176 623.6 355 81.4
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 2.2e-173 613.2 420 70.7
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 7.7e-134 481.9 245 86.9
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 1.1e-127 461.5 464 52.8
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 1.0e-117 428.3 254 80.3
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 1.6e-91 341.3 201 77.6
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.7e-85 321.2 187 76.5
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 4.9e-80 303.1 165 82.4
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 2.4e-71 274.2 235 60.4
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.1e-62 244.6 121 88.4
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 1.8e-61 241.5 130 83.1
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 5.7e-52 209.9 162 59.3
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 3.1e-50 204.1 346 37.0
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 2.5e-47 194.5 121 69.4
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 7.9e-46 189.5 108 81.5
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 2.8e-43 181.0 121 67.8
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 9.1e-42 176.0 83 94.0
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 4.8e-35 153.7 86 79.1
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 6.5e-32 143.3 86 75.6
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 6.5e-32 143.3 86 75.6
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.5e-31 142.1 103 70.9
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 8.0e-30 136.3 148 50.0
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 6.3e-27 126.7 72 84.7
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 4.1e-26 124.0 211 35.5
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 2.3e-21 108.2 51 88.2
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 4.0e-21 107.5 68 76.5
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.6e-20 104.8 78 62.8
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 7.5e-20 103.2 56 78.6
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 7.5e-20 103.2 56 78.6
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.7e-19 102.1 82 64.6
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 3.7e-19 100.9 139 44.6
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.8e-19 100.5 78 60.3
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 4.8e-19 100.5 205 29.3
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 6.3e-19 100.1 78 61.5
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 6.3e-19 100.1 225 28.9
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 2.0e-17 95.1 79 59.5
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.7e-16 92.0 73 61.6
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.7e-16 92.0 73 61.6
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 2.2e-16 91.7 208 26.4
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 8.0e-14 83.2 65 58.5
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 1.2e-09 69.3 34 76.5


User provided reference genes

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