Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 3.4e-52 208.0 101 100.0
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 4.2e-42 174.5 97 88.7
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 4.3e-31 137.9 89 73.0
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 1.6e-30 136.0 97 71.1
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 1.2e-28 129.8 94 66.0
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 5.5e-26 120.9 102 60.8
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 7.2e-26 120.6 89 62.9
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 9.4e-26 120.2 89 66.3
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 9.4e-26 120.2 89 65.2
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 1.6e-25 119.4 89 67.4
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 2.7e-25 118.6 87 66.7
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 2.7e-25 118.6 97 62.9
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 6.1e-25 117.5 89 66.3
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 7.9e-25 117.1 89 66.3
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 1.4e-24 116.3 98 61.2
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 2.3e-24 115.5 89 65.2
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 2.3e-24 115.5 87 66.7
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 6.7e-24 114.0 94 60.6
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 3.3e-23 111.7 119 51.3
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 4.3e-23 111.3 90 62.2
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 1.3e-22 109.8 89 65.2
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 2.2e-22 109.0 89 59.6
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 2.2e-22 109.0 95 53.7
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 2.2e-22 109.0 92 62.0
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 2.4e-21 105.5 89 62.9
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 3.1e-21 105.1 92 54.3
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 4.1e-21 104.8 95 52.6
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 5.3e-21 104.4 95 55.8
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 5.3e-21 104.4 89 61.8
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 9.1e-21 103.6 89 59.6
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 9.1e-21 103.6 89 58.4
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 1.5e-20 102.8 87 55.2
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 2.0e-20 102.4 89 57.3
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 4.5e-20 101.3 89 56.2
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 7.7e-20 100.5 89 55.1
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 1.3e-19 99.8 95 50.5
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 1.3e-19 99.8 89 56.2
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 1.7e-19 99.4 89 56.2
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 1.7e-19 99.4 87 56.3
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 2.9e-19 98.6 87 56.3
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 8.5e-19 97.1 90 51.1
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 1.9e-18 95.9 88 60.2
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 2.5e-18 95.5 91 56.0
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 2.5e-18 95.5 89 56.2
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 4.2e-18 94.7 95 55.8
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 4.2e-18 94.7 91 56.0
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 7.2e-18 94.0 87 51.7
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 2.1e-17 92.4 87 55.2
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 2.1e-17 92.4 95 54.7
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 3.6e-17 91.7 94 51.1
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 6.1e-17 90.9 80 58.8
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 7.9e-17 90.5 89 56.2
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 7.9e-17 90.5 90 51.1
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 7.9e-17 90.5 96 51.0
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 1.8e-16 89.4 79 57.0
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 1.8e-16 89.4 89 50.6
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 2.3e-16 89.0 87 52.9
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 3.9e-16 88.2 87 52.9
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 5.1e-16 87.8 86 48.8
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 8.8e-16 87.0 94 48.9
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 8.8e-16 87.0 79 55.7
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 8.8e-16 87.0 86 53.5
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 8.8e-16 87.0 94 46.8
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 1.1e-15 86.7 87 50.6
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 1.5e-15 86.3 92 55.4
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 1.5e-15 86.3 89 51.7
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 4.4e-15 84.7 87 50.6
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 4.4e-15 84.7 89 55.1
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 7.4e-15 84.0 89 49.4
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 9.7e-15 83.6 89 51.7
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 1.3e-14 83.2 87 48.3
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 1.3e-14 83.2 87 48.3
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 1.3e-14 83.2 94 50.0
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 6.3e-14 80.9 89 51.7
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 1.1e-13 80.1 92 48.9
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 1.4e-13 79.7 94 53.2
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 1.4e-13 79.7 81 51.9
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 1.4e-13 79.7 89 47.2
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 3.1e-13 78.6 96 51.0
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 9.1e-13 77.0 94 41.5
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 1.2e-12 76.6 89 44.9
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 3.5e-12 75.1 51 72.5
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 1.0e-11 73.6 89 44.9
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 1.3e-11 73.2 89 42.7
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 5.0e-11 71.2 89 42.7
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 6.5e-11 70.9 89 41.6
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 8.5e-11 70.5 79 50.6
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 4.2e-10 68.2 93 44.1
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 1.2e-09 66.6 92 38.0
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 3.3e-07 58.5 94 36.2
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 4.4e-07 58.2 59 55.9
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 9.7e-07 57.0 63 44.4
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 1.3e-06 56.6 63 52.4
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 6.3e-06 54.3 59 55.9


User provided reference genes

Program Settings