Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1178500 Malus domestica HOM05D000347 ORTHO05D008062 6.6e-157 557.4 289 100.0
MD10G1166700 Malus domestica HOM05D000347 ORTHO05D008062 8.7e-125 450.7 289 84.1
Prupe.8G205000 Prunus persica HOM05D000347 ORTHO05D000694 7.9e-110 401.0 282 78.7
RcHm_v2.0_Chr6g0285151 Rosa chinensis HOM05D000347 ORTHO05D008062 2.1e-102 376.3 291 70.4
FAN15G1475 Fragaria x ananassa HOM05D000347 ORTHO05D000694 4.3e-100 368.6 290 70.0
FvH4_2g19360 Fragaria vesca HOM05D000347 ORTHO05D008062 4.5e-97 358.6 291 68.7
FAN27G2014 Fragaria x ananassa HOM05D000347 ORTHO05D008062 2.5e-95 352.8 285 68.8
FAN24G2098 Fragaria x ananassa HOM05D000347 ORTHO05D000694 1.7e-88 330.1 288 64.9
CiPaw.04G106800 Carya illinoinensis HOM05D000347 ORTHO05D000694 9.7e-76 287.7 288 57.3
Dinv19218 Davidia involucrata HOM05D000347 ORTHO05D008062 1.0e-69 267.7 290 55.2
Eucgr.H00807 Eucalyptus grandis HOM05D000347 ORTHO05D008062 8.8e-69 264.6 292 53.1
Manes.12G042000 Manihot esculenta HOM05D000347 ORTHO05D008062 2.6e-68 263.1 291 52.9
Thecc.01G228300 Theobroma cacao HOM05D000347 ORTHO05D008062 2.6e-68 263.1 291 55.3
GSVIVG01028561001 Vitis vinifera HOM05D000347 ORTHO05D008062 2.8e-67 259.6 270 55.9
Gohir.A11G136100 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.4e-61 240.7 292 50.3
Potri.002G240300 Populus trichocarpa HOM05D000347 ORTHO05D008062 1.8e-61 240.4 288 51.4
Gorai.007G152800 Gossypium raimondii HOM05D000347 ORTHO05D008062 2.3e-61 240.0 290 50.3
Gohir.D11G142500 Gossypium hirsutum HOM05D000347 ORTHO05D008062 4.0e-61 239.2 292 50.0
Glyma.08G356200 Glycine max HOM05D000347 ORTHO05D008062 2.6e-60 236.5 297 50.8
Ciclev10021356m.g Citrus clementina HOM05D000347 ORTHO05D008062 4.4e-60 235.7 307 49.8
PGR083G0949 Punica granatum HOM05D000347 ORTHO05D008062 4.4e-60 235.7 293 51.2
Phvul.008G123300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 5.3e-58 228.8 303 51.8
Sabra02G0183100 Salix brachista HOM05D000347 ORTHO05D008062 1.2e-57 227.6 236 60.2
Migut.D00520 Erythranthe guttata HOM05D000347 ORTHO05D008062 3.5e-57 226.1 300 48.7
Glyma.18G173300 Glycine max HOM05D000347 ORTHO05D008062 7.7e-57 224.9 301 49.8
Hma1.2p1_0351F.1_g132820 Hydrangea macrophylla HOM05D000347 ORTHO05D008062 1.7e-56 223.8 286 50.0
QL09p044668 Quercus lobata HOM05D000347 ORTHO05D008062 1.7e-56 223.8 181 67.4
CANSAT01G0926 Cannabis sativa HOM05D000347 ORTHO05D008062 2.9e-56 223.0 311 47.3
CsaV3_3G028770 Cucumis sativus L. HOM05D000347 ORTHO05D008062 4.2e-55 219.2 290 46.6
Cc01_g17250 Coffea canephora HOM05D000347 ORTHO05D008062 2.7e-54 216.5 305 49.2
VMungo1383G0854 Vigna mungo HOM05D000347 ORTHO05D008062 6.8e-53 211.8 294 49.0
Lj1g0023077 Lotus japonicus HOM05D000347 ORTHO05D008062 2.0e-52 210.3 289 46.0
TWI18G0408 Tripterygium wilfordii HOM05D000347 ORTHO05D008062 2.6e-52 209.9 350 44.6
TAR636G2566 Trochodendron aralioides HOM05D000347 ORTHO05D008062 7.5e-52 208.4 304 44.1
MSTRG.21431 Avicennia marina HOM05D000347 ORTHO05D008062 6.3e-51 205.3 290 47.2
CiPaw.03G151400 Carya illinoinensis HOM05D000347 ORTHO05D008062 6.3e-51 205.3 179 63.1
Actinidia23733 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.8e-50 203.8 292 49.3
Medtr0027s0180 Medicago truncatula HOM05D000347 ORTHO05D008062 1.8e-50 203.8 241 52.7
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 4.1e-50 202.6 285 45.6
Sed0024927 Sechium edule HOM05D000901 ORTHO05D008062 1.2e-49 201.1 293 45.7
CSS0034279 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D008062 1.7e-48 197.2 184 61.4
Sed0024241 Sechium edule HOM05D000347 ORTHO05D008062 2.3e-48 196.8 283 46.3
Nn1g07779 Nelumbo nucifera HOM05D000347 ORTHO05D008062 2.9e-48 196.4 300 42.7
Actinidia37581 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.1e-47 194.5 179 63.1
TAR365G0021 Trochodendron aralioides HOM05D000347 ORTHO05D008062 1.2e-46 191.0 308 42.5
Nitab4.5_0000866g0010 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.2e-44 184.5 283 46.6
Haze_24776 Corylus avellana HOM05D000347 ORTHO05D008062 1.5e-44 184.1 205 55.1
Actinidia30090 Actinidia chinensis HOM05D000347 ORTHO05D008062 2.0e-44 183.7 180 61.1
Psat3g142320 Pisum sativum HOM05D000347 ORTHO05D008062 2.0e-44 183.7 291 44.3
TPR.G15284 Trifolium pratense HOM05D000347 ORTHO05D008062 2.0e-44 183.7 292 44.5
TAR365G1261 Trochodendron aralioides HOM05D000347 ORTHO05D008062 2.0e-44 183.7 321 40.5
SGA_v2.0_scaffold1G00715 Striga asiatica HOM05D000347 ORTHO05D008062 3.7e-43 179.5 291 44.3
Lalb_Chr03g0041901 Lupinus albus HOM05D000347 ORTHO05D008062 1.1e-42 177.9 262 46.6
Rhsim13G0044000 Rhododendron simsii HOM05D000347 ORTHO05D008062 1.4e-42 177.6 184 56.5
Cpa.g.sc8.175 Carica papaya HOM05D000347 ORTHO05D008062 3.2e-42 176.4 300 43.3
MELO3C018065.2 Cucumis melo HOM05D000347 ORTHO05D008062 4.5e-41 172.6 192 54.2
Oeu018505.1 Olea europaea HOM05D000879 ORTHO05D002043 7.8e-41 171.8 175 56.0
Solyc09g061715.1 Solanum lycopersicum HOM05D000347 ORTHO05D008062 1.0e-40 171.4 284 43.3
Sopen09g024710 Solanum pennellii HOM05D000347 ORTHO05D008062 1.0e-40 171.4 284 43.3
HanXRQChr01g0014681 Helianthus annuus HOM05D000347 ORTHO05D008062 1.5e-39 167.5 182 56.6
Sopen06g034940 Solanum pennellii HOM05D000347 ORTHO05D008062 2.5e-39 166.8 291 41.6
Ca_07542_v3 Cicer arietinum L. HOM05D000347 ORTHO05D008062 3.3e-39 166.4 181 53.0
Lalb_Chr01g0022451 Lupinus albus HOM05D000347 ORTHO05D008062 3.3e-39 166.4 291 41.6
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 3.3e-39 166.4 285 42.5
Solyc06g083560.3 Solanum lycopersicum HOM05D000347 ORTHO05D008062 2.1e-38 163.7 292 40.8
SalBow4G1846 Salvia bowleyana HOM05D000347 ORTHO05D008062 6.1e-38 162.2 174 55.7
Medtr7g059080 Medicago truncatula HOM05D000347 ORTHO05D008062 8.0e-38 161.8 159 59.7
Glyma.16G094000 Glycine max HOM05D000347 ORTHO05D008062 4.0e-37 159.5 291 37.8
Gohir.A08G194000 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.7e-35 154.1 305 38.4
Lsat_1_v5_gn_5_179760 Lactuca sativa HOM05D000347 ORTHO05D008062 3.7e-35 152.9 200 53.5
Gohir.D08G211800 Gossypium hirsutum HOM05D000347 ORTHO05D008062 2.4e-34 150.2 305 38.4
arahy.Tifrunner.gnm1.ann1.W0YDFD Arachis hypogaea HOM05D000347 ORTHO05D008062 5.4e-34 149.1 303 38.3
Aqoxy2G03776 Aquilegia oxysepala HOM05D000347 ORTHO05D008062 1.2e-33 147.9 305 38.4
Gorai.004G225100 Gossypium raimondii HOM05D000347 ORTHO05D008062 3.5e-33 146.4 304 38.2
Peaxi162Scf02141g00004 Petunia axillaris HOM05D000347 ORTHO05D008062 6.0e-33 145.6 193 47.2
vmacro02746 Vaccinium macrocarpon HOM05D000347 ORTHO05D008062 1.7e-32 144.1 182 52.2
VMungo0331G1006 Vigna mungo HOM05D000347 ORTHO05D008062 1.5e-31 141.0 290 35.9
arahy.Tifrunner.gnm1.ann1.54FW37 Arachis hypogaea HOM05D000347 ORTHO05D008062 7.3e-31 138.7 252 41.3
PGSC0003DMG400003422 Solanum tuberosum HOM05D000347 ORTHO05D008062 8.0e-30 135.2 179 50.3
AUR62031831 Chenopodium quinoa HOM05D000347 ORTHO05D008062 2.9e-27 126.7 190 46.3
Phvul.010G019300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 4.9e-27 125.9 282 34.4
Lj3g0009150 Lotus japonicus HOM05D000347 ORTHO05D008062 6.4e-27 125.6 289 34.9
Peaxi162Scf00517g00428 Petunia axillaris HOM05D000347 ORTHO05D008062 2.4e-26 123.6 212 42.0
Nitab4.5_0003790g0070 Nicotiana tabacum HOM05D000347 ORTHO05D008062 3.2e-26 123.2 113 64.6
Medtr0027s0200 Medicago truncatula HOM05D000347 ORTHO05D008062 4.6e-25 119.4 197 43.1
Sc05g0002410 Simmondsia chinensis HOM05D000347 ORTHO05D008062 7.8e-25 118.6 303 36.0
Ah.08g214040 Amaranthus hybridus HOM05D000901 ORTHO05D008062 1.7e-24 117.5 246 37.0
DCAR_018551 Daucus carota HOM05D000347 ORTHO05D008062 1.7e-24 117.5 196 43.4
DCAR_004713 Daucus carota HOM05D000347 ORTHO05D008062 3.9e-24 116.3 185 47.6
Carub.0003s2514 Capsella rubella HOM05D011699 ORTHO05D008062 1.5e-23 114.4 300 37.7
BcaB06g26692 Brassica carinata HOM05D011699 ORTHO05D008062 2.5e-23 113.6 291 32.6
Atru.chr5.2056 Acer truncatum HOM05D000347 ORTHO05D008062 2.8e-22 110.2 112 56.2
Nitab4.5_0002085g0080 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.1e-21 108.2 252 35.7
Phvul.010G019000 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 1.4e-21 107.8 219 38.4
A07p07520 Brassica napus HOM05D011699 ORTHO05D008062 8.9e-21 105.1 288 32.6
BraA07t28543Z Brassica rapa HOM05D011699 ORTHO05D008062 8.9e-21 105.1 288 32.6
Nn3g19918 Nelumbo nucifera HOM05D000347 ORTHO05D008062 1.2e-20 104.8 197 37.6
AL3G40480 Arabidopsis lyrata HOM05D011699 ORTHO05D008062 4.4e-20 102.8 300 34.7
C07p11290 Brassica napus HOM05D011699 ORTHO05D008062 1.3e-19 101.3 289 32.2
BcaC06g35749 Brassica carinata HOM05D011699 ORTHO05D008062 2.2e-19 100.5 285 33.0
BolC7t41607H Brassica oleracea HOM05D011699 ORTHO05D008062 2.9e-19 100.1 284 32.7
AT3G24750 Arabidopsis thaliana HOM05D011699 ORTHO05D008062 3.7e-19 99.8 296 33.4
Sp3g22490 Schrenkiella parvula HOM05D011699 ORTHO05D008062 3.7e-19 99.8 287 32.8
MBI07_g21075_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D008062 4.6e-17 92.8 194 43.3
Sc24g0003600 Simmondsia chinensis HOM05D000347 ORTHO05D008062 2.3e-16 90.5 159 40.3
Oeu058867.1 Olea europaea HOM05D000347 ORTHO05D008062 3.9e-16 89.7 78 62.8
AUR62008877 Chenopodium quinoa HOM05D000347 ORTHO05D008062 5.1e-16 89.4 120 46.7
THA.LOC104821644 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 2.5e-15 87.0 164 40.9
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 4.3e-15 86.3 136 43.4
Thhalv10002691m.g Eutrema salsugineum HOM05D011699 ORTHO05D008062 6.2e-14 82.4 137 42.3
CARHR101080 Cardamine hirsuta HOM05D011699 ORTHO05D008062 1.1e-13 81.6 291 30.9
EL10Ac7g17790 Beta vulgaris HOM05D000347 ORTHO05D008062 5.8e-12 75.9 247 32.0
THA.LOC104804603 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 5.8e-12 75.9 297 32.0
PSO017G1362 Papaver somniferum HOM05D000347 ORTHO05D008062 1.0e-08 65.1 227 31.3
ECA248G1409 Erigeron canadensis HOM05D000102 ORTHO05D000138 5.1e-08 62.8 74 50.0
PSO063G6109 Papaver somniferum HOM05D000347 ORTHO05D008062 5.1e-08 62.8 138 40.6
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 1.3e-06 58.2 163 33.7
Nitab4.5_0006773g0040 Nicotiana tabacum HOM05D000347 ORTHO05D008062 2.8e-06 57.0 41 65.9


User provided reference genes

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