Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1176900 Malus domestica HOM05D006066 ORTHO05D007720 2.4e-209 731.9 356 100.0
MD10G1165500 Malus domestica HOM05D006066 ORTHO05D007720 2.9e-138 495.7 320 79.1
Prupe.8G204000 Prunus persica HOM05D006066 ORTHO05D007720 3.8e-122 442.2 319 71.2
RcHm_v2.0_Chr6g0284991 Rosa chinensis HOM05D006066 ORTHO05D007720 3.2e-113 412.5 319 67.1
FvH4_2g19201 Fragaria vesca HOM05D006066 ORTHO05D007720 2.3e-111 406.4 319 65.8
Dinv09237 Davidia involucrata HOM05D006066 ORTHO05D007720 6.3e-101 371.7 326 57.7
Cfa008679 Carpinus fangiana HOM05D006066 ORTHO05D007720 9.1e-100 367.9 320 60.9
Atru.chr11.2652 Acer truncatum HOM05D006066 ORTHO05D007720 4.5e-99 365.5 320 59.7
Hma1.2p1_1061F.1_g253440 Hydrangea macrophylla HOM05D006066 ORTHO05D007720 2.5e-97 359.8 320 55.6
CiPaw.01G110500 Carya illinoinensis HOM05D006066 ORTHO05D007720 3.2e-97 359.4 318 58.8
CSS0038727 Camellia sinensis var. sinensis HOM05D006066 ORTHO05D007720 2.3e-95 353.2 331 55.6
CSS0045030 Camellia sinensis var. sinensis HOM05D006066 ORTHO05D007720 2.3e-95 353.2 331 55.6
Rhsim01G0256300 Rhododendron simsii HOM05D006066 ORTHO05D007720 7.5e-94 348.2 320 55.9
Lj2C634T6 Lonicera japonica HOM05D006066 ORTHO05D007720 1.3e-93 347.4 320 56.2
Cpa.g.sc8.165 Carica papaya HOM05D006066 ORTHO05D007720 3.7e-93 345.9 320 55.0
Potri.002G241366 Populus trichocarpa HOM05D006066 ORTHO05D007720 1.6e-91 340.5 316 55.1
Lj2A644T10 Lonicera japonica HOM05D006066 ORTHO05D007720 2.7e-91 339.7 350 51.7
QL06p028105 Quercus lobata HOM05D006066 ORTHO05D007720 3.8e-90 335.9 418 46.2
vmacro14760 Vaccinium macrocarpon HOM05D006066 ORTHO05D007720 1.5e-89 334.0 330 53.0
Manes.11G092400 Manihot esculenta HOM05D006066 ORTHO05D007720 1.6e-88 330.5 319 53.6
TAR393G0002 Trochodendron aralioides HOM05D006066 ORTHO05D007720 1.6e-88 330.5 319 53.6
Duzib133G0184 Durio zibethinus HOM05D006066 ORTHO05D007720 3.6e-88 329.3 320 54.1
FAN24G1416 Fragaria x ananassa HOM05D006066 ORTHO05D000168 1.8e-87 327.0 319 58.3
FAN15G1679 Fragaria x ananassa HOM05D006066 ORTHO05D007720 2.3e-87 326.6 319 58.3
TWI36G0510 Tripterygium wilfordii HOM05D006066 ORTHO05D007720 6.3e-85 318.5 320 52.5
Lalb_Chr07g0194051 Lupinus albus HOM05D006066 ORTHO05D007720 4.1e-84 315.8 323 51.7
Migut.D00528 Erythranthe guttata HOM05D006066 ORTHO05D007720 5.4e-84 315.5 320 51.9
Gohir.A11G137000 Gossypium hirsutum HOM05D006066 ORTHO05D007720 5.4e-84 315.5 320 52.5
VMungo0331G1521 Vigna mungo HOM05D006066 ORTHO05D007720 9.1e-84 314.7 324 50.3
THA.LOC104818950 Tarenaya hassleriana HOM05D006066 ORTHO05D007720 2.7e-83 313.2 331 49.2
Ciclev10020152m.g Citrus clementina HOM05D006066 ORTHO05D007720 5.9e-83 312.0 302 53.6
Gorai.007G153600 Gossypium raimondii HOM05D006066 ORTHO05D007720 5.9e-83 312.0 320 52.2
Cc01_g17160 Coffea canephora HOM05D006066 ORTHO05D007720 2.9e-82 309.7 319 49.8
GSVIVG01028660001 Vitis vinifera HOM05D006066 ORTHO05D007720 6.5e-82 308.5 442 41.6
Lj3g0025737 Lotus japonicus HOM05D006066 ORTHO05D007720 1.1e-81 307.8 324 51.9
ClCG07G001890 Citrullus lanatus HOM05D006066 ORTHO05D007720 1.9e-81 307.0 320 52.5
Ca_26562_v3 Cicer arietinum L. HOM05D006066 ORTHO05D007720 2.5e-81 306.6 333 49.2
SGA_v2.0_scaffold586G53055 Striga asiatica HOM05D006066 ORTHO05D007720 2.5e-81 306.6 329 49.2
SGA_v2.0_scaffold8G04647 Striga asiatica HOM05D006066 ORTHO05D007720 4.2e-81 305.8 340 47.1
ECA236G0120 Erigeron canadensis HOM05D006066 ORTHO05D007720 7.2e-81 305.1 320 51.6
Nn1g07817 Nelumbo nucifera HOM05D006066 ORTHO05D007720 7.2e-81 305.1 320 50.6
Thecc.01G227100 Theobroma cacao HOM05D006066 ORTHO05D007720 7.2e-81 305.1 300 54.0
AT3G07060 Arabidopsis thaliana HOM05D006066 ORTHO05D007720 2.1e-80 303.5 331 48.6
BcaC05g29758 Brassica carinata HOM05D006066 ORTHO05D007720 2.7e-80 303.1 326 49.7
CARHR081650 Cardamine hirsuta HOM05D006066 ORTHO05D007720 2.7e-80 303.1 326 49.1
Thhalv10020116m.g Eutrema salsugineum HOM05D006066 ORTHO05D007720 2.7e-80 303.1 331 48.9
BraA05t22840Z Brassica rapa HOM05D006066 ORTHO05D000168 4.7e-80 302.4 326 48.8
TPR.G5589 Trifolium pratense HOM05D006066 ORTHO05D007720 4.7e-80 302.4 323 48.6
AL3G18290 Arabidopsis lyrata HOM05D006066 ORTHO05D007720 1.8e-79 300.4 331 48.3
Solyc09g061380.3 Solanum lycopersicum HOM05D006066 ORTHO05D007720 1.8e-79 300.4 320 48.4
Sopen09g024200 Solanum pennellii HOM05D006066 ORTHO05D007720 1.8e-79 300.4 320 48.4
HanXRQChr04g0110731 Helianthus annuus HOM05D006066 ORTHO05D007720 3.0e-79 299.7 320 49.7
MELO3C026986.2 Cucumis melo HOM05D006066 ORTHO05D007720 5.2e-79 298.9 319 51.1
A05p41140 Brassica napus HOM05D006066 ORTHO05D007720 6.8e-79 298.5 326 49.1
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 6.8e-79 298.5 327 47.7
Sed0017682 Sechium edule HOM05D006066 ORTHO05D007720 6.8e-79 298.5 320 50.9
CAN.G154.6 Capsicum annuum HOM05D006066 ORTHO05D007720 1.5e-78 297.4 321 50.5
PGR119G0212 Punica granatum HOM05D006066 ORTHO05D007720 5.7e-78 295.4 320 49.1
Carub.0003s0657 Capsella rubella HOM05D006066 ORTHO05D007720 9.8e-78 294.7 332 47.6
AUR62031844 Chenopodium quinoa HOM05D006066 ORTHO05D007720 9.8e-78 294.7 320 48.4
Medtr4g022660 Medicago truncatula HOM05D006066 ORTHO05D007720 1.7e-77 293.9 322 48.4
Medtr7g026915 Medicago truncatula HOM05D006066 ORTHO05D007720 1.7e-77 293.9 322 48.1
EL10Ac7g17774 Beta vulgaris HOM05D006066 ORTHO05D007720 2.2e-77 293.5 333 46.2
C05p60330 Brassica napus HOM05D006066 ORTHO05D007720 2.8e-77 293.1 326 48.5
Haze_11697 Corylus avellana HOM05D006066 ORTHO05D007720 3.7e-77 292.7 306 52.9
CsaV3_3G029870 Cucumis sativus L. HOM05D006066 ORTHO05D007720 8.3e-77 291.6 319 49.2
Aa31LG5G17620 Aethionema arabicum HOM05D006066 ORTHO05D007720 1.4e-76 290.8 382 42.9
Aqoxy2G03103 Aquilegia oxysepala HOM05D006066 ORTHO05D007720 1.4e-76 290.8 320 48.8
BolC5t34680H Brassica oleracea HOM05D006066 ORTHO05D007720 1.4e-76 290.8 327 48.3
BcaC05g29836 Brassica carinata HOM05D006066 ORTHO05D000168 1.8e-76 290.4 326 48.2
Psat2g159600 Pisum sativum HOM05D006066 ORTHO05D007720 2.4e-76 290.0 333 48.0
COL.COLO4_07189 Corchorus olitorius HOM05D006066 ORTHO05D007720 3.1e-76 289.7 320 49.1
AUR62008867 Chenopodium quinoa HOM05D006066 ORTHO05D007720 7.0e-76 288.5 320 47.5
Sp3g06000 Schrenkiella parvula HOM05D006066 ORTHO05D007720 7.0e-76 288.5 331 47.4
PSO170G1150 Papaver somniferum HOM05D006066 ORTHO05D007720 1.0e-74 284.6 333 47.1
SalBow6G7080 Salvia bowleyana HOM05D006066 ORTHO05D007720 2.3e-74 283.5 334 45.8
PSO782G0283 Papaver somniferum HOM05D006066 ORTHO05D007720 2.9e-74 283.1 333 46.8
Eucgr.K03610 Eucalyptus grandis HOM05D006066 ORTHO05D007720 1.5e-73 280.8 330 48.8
Eucgr.L02049 Eucalyptus grandis HOM05D006066 ORTHO05D007720 1.5e-73 280.8 323 48.9
Nitab4.5_0000045g0020 Nicotiana tabacum HOM05D006066 ORTHO05D007720 1.5e-73 280.8 320 49.1
Hund18348 Selenicereus undatus HOM05D006066 ORTHO05D007720 2.8e-72 276.6 339 46.3
Ah.08g213920 Amaranthus hybridus HOM05D006066 ORTHO05D007720 4.7e-72 275.8 315 47.0
Actinidia23727 Actinidia chinensis HOM05D006066 ORTHO05D007720 1.8e-71 273.9 320 49.7
Nitab4.5_0001872g0040 Nicotiana tabacum HOM05D006066 ORTHO05D007720 2.6e-70 270.0 328 47.0
Gohir.D11G143350 Gossypium hirsutum HOM05D006066 ORTHO05D007720 3.9e-66 256.1 252 52.4
Hma1.2p1_1061F.1_g253450 Hydrangea macrophylla HOM05D006066 ORTHO05D007720 1.1e-65 254.6 246 52.4
Glyma.19G124200 Glycine max HOM05D006066 ORTHO05D007720 4.0e-63 246.1 256 50.8
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 8.9e-63 245.0 323 39.6
Zm00001eb173150 Zea mays HOM05D006066 ORTHO05D007720 5.8e-62 242.3 320 41.2
arahy.Tifrunner.gnm1.ann1.50JBL9 Arachis hypogaea HOM05D006066 ORTHO05D007720 9.8e-62 241.5 245 49.8
Sc24g0003620 Simmondsia chinensis HOM05D006066 ORTHO05D007720 1.7e-61 240.7 253 49.0
Phvul.010G014600 Phaseolus vulgaris HOM05D006066 ORTHO05D007720 2.7e-59 233.4 278 45.0
arahy.Tifrunner.gnm1.ann1.9R7KTD Arachis hypogaea HOM05D006066 ORTHO05D007720 2.3e-58 230.3 236 49.2
Dinv01555 Davidia involucrata HOM05D006066 ORTHO05D007720 1.5e-57 227.6 215 55.8
SHI34881 Sapria himalayana HOM05D006066 ORTHO05D007720 9.5e-57 224.9 310 41.9
Peaxi162Scf00107g01622 Petunia axillaris HOM05D006066 ORTHO05D007720 3.4e-54 216.5 311 42.1
SEGI_19430 Sequoiadendron giganteum HOM05D006066 ORTHO05D007720 2.1e-51 207.2 328 36.0
unitig_22.g5305 Utricularia gibba HOM05D006066 ORTHO05D007720 9.5e-49 198.4 314 39.8
FAN27G1043 Fragaria x ananassa HOM05D006066 ORTHO05D007720 1.4e-47 194.5 310 41.0
MSTRG.21425 Avicennia marina HOM05D006066 ORTHO05D007720 2.6e-38 163.7 135 57.0
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 2.1e-35 154.1 310 33.2
CDE06G2585 Ceratophyllum demersum HOM05D006066 ORTHO05D007720 2.4e-31 140.6 257 33.9
PSO674G0067 Papaver somniferum HOM05D006066 ORTHO05D007720 1.5e-30 137.9 191 41.4
Pp3c3_5060 Physcomitrium patens HOM05D006066 ORTHO05D007720 9.3e-28 128.6 330 28.8
Dinv01554 Davidia involucrata HOM05D006066 ORTHO05D007720 1.1e-20 105.1 61 82.0
Mapoly0057s0011 Marchantia polymorpha HOM05D006066 ORTHO05D007720 2.7e-19 100.5 341 24.6
Aqoxy5G00070 Aquilegia oxysepala HOM05D006066 ORTHO05D007720 3.0e-18 97.1 274 28.5
Lsat_1_v5_gn_8_160280 Lactuca sativa HOM05D001279 ORTHO05D001636 2.0e-14 84.3 167 33.5
MSTRG.21426 Avicennia marina HOM05D006066 ORTHO05D007720 2.5e-12 77.4 73 57.5
QL04p047329 Quercus lobata HOM05D003456 ORTHO05D001557 3.2e-12 77.0 41 82.9
vmacro14757 Vaccinium macrocarpon HOM05D006066 ORTHO05D007720 9.3e-12 75.5 67 58.2
QL02p065377 Quercus lobata HOM05D001657 ORTHO05D007720 1.2e-11 75.1 62 58.1
QL04p047196 Quercus lobata HOM05D001657 ORTHO05D007720 1.2e-11 75.1 62 58.1
TPR.G638 Trifolium pratense HOM05D006066 ORTHO05D007720 5.7e-09 66.2 48 60.4
Lsat_1_v5_gn_5_64901 Lactuca sativa HOM05D001279 ORTHO05D001636 6.3e-08 62.8 104 38.5
Lsat_1_v5_gn_4_37140 Lactuca sativa HOM05D001279 ORTHO05D001636 1.0e-05 55.5 71 43.7
SMO358G0750 Selaginella moellendorffii HOM05D005293 ORTHO05D006764 1.0e-05 55.5 134 26.9


User provided reference genes

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