Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1163400 Malus domestica HOM05D006940 ORTHO05D008626 1.4e-59 232.6 113 100.0
MD10G1153200 Malus domestica HOM05D006940 ORTHO05D008626 1.0e-49 199.9 111 88.3
Prupe.8G192000 Prunus persica HOM05D006940 ORTHO05D008626 3.0e-41 171.8 115 79.1
RcHm_v2.0_Chr6g0283181 Rosa chinensis HOM05D006940 ORTHO05D008626 7.0e-38 160.6 106 76.4
FAN24G1170 Fragaria x ananassa HOM05D006940 ORTHO05D008626 7.7e-37 157.1 113 69.0
FvH4_2g17950 Fragaria vesca HOM05D006940 ORTHO05D008626 3.8e-36 154.8 113 68.1
FAN15G1530 Fragaria x ananassa HOM05D006940 ORTHO05D008626 3.8e-36 154.8 113 68.1
FAN27G2163 Fragaria x ananassa HOM05D006940 ORTHO05D008626 3.6e-34 148.3 113 65.5
Dinv28817 Davidia involucrata HOM05D006940 ORTHO05D008626 1.3e-31 139.8 118 66.1
Potri.002G249901 Populus trichocarpa HOM05D006940 ORTHO05D008626 9.2e-30 133.7 110 62.7
QL09p045850 Quercus lobata HOM05D006940 ORTHO05D008626 4.5e-29 131.3 114 62.3
CSS0001884 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 5.9e-29 131.0 114 65.8
Manes.12G052500 Manihot esculenta HOM05D006940 ORTHO05D008626 1.7e-28 129.4 103 63.1
arahy.Tifrunner.gnm1.ann1.ZA5GY6 Arachis hypogaea HOM05D006940 ORTHO05D008626 2.3e-28 129.0 113 61.1
Duzib211G0506 Durio zibethinus HOM05D006940 ORTHO05D008626 2.3e-28 129.0 104 64.4
Thecc.01G212400 Theobroma cacao HOM05D006940 ORTHO05D008626 2.3e-28 129.0 104 66.3
Duzib133G0939 Durio zibethinus HOM05D006940 ORTHO05D008626 8.6e-28 127.1 114 63.2
Gohir.A11G141800 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.1e-27 126.7 103 66.0
Gorai.007G158800 Gossypium raimondii HOM05D006940 ORTHO05D008626 1.1e-27 126.7 103 66.0
Gorai.N003800 Gossypium raimondii HOM05D006940 ORTHO05D008626 1.1e-27 126.7 103 63.1
PGR044G1150 Punica granatum HOM05D006940 ORTHO05D008626 1.1e-27 126.7 111 62.2
Ciclev10033128m.g Citrus clementina HOM05D006940 ORTHO05D008626 1.9e-27 125.9 105 63.8
Duzib138G0498 Durio zibethinus HOM05D006940 ORTHO05D008626 1.9e-27 125.9 104 65.4
Gohir.D11G148100 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.9e-27 125.9 103 65.0
TAR365G0827 Trochodendron aralioides HOM05D006940 ORTHO05D008626 5.6e-27 124.4 110 60.9
Gohir.D07G166700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 9.5e-27 123.6 103 62.1
Rhsim13G0052100 Rhododendron simsii HOM05D006940 ORTHO05D008626 1.2e-26 123.2 115 60.0
Gohir.A07G197033 Gossypium hirsutum HOM05D006940 ORTHO05D008626 2.8e-26 122.1 101 61.4
Glyma.18G152800 Glycine max HOM05D006940 ORTHO05D008626 3.6e-26 121.7 114 60.5
Gohir.A07G159700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 3.6e-26 121.7 103 62.1
MELO3C021111.2 Cucumis melo HOM05D006940 ORTHO05D008626 8.0e-26 120.6 115 60.0
Nitab4.5_0000038g0040 Nicotiana tabacum HOM05D006940 ORTHO05D008626 8.0e-26 120.6 108 57.4
CSS0043498 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 1.4e-25 119.8 113 58.4
Atru.chr6.1604 Acer truncatum HOM05D006940 ORTHO05D008626 1.8e-25 119.4 96 62.5
Eucgr.K02098 Eucalyptus grandis HOM05D006940 ORTHO05D008626 1.8e-25 119.4 113 58.4
Manes.13G053500 Manihot esculenta HOM05D006940 ORTHO05D008626 2.3e-25 119.0 88 67.0
CsaV3_7G026610 Cucumis sativus L. HOM05D006940 ORTHO05D008626 3.0e-25 118.6 94 61.7
Gohir.D07G203400 Gossypium hirsutum HOM05D006940 ORTHO05D008626 3.0e-25 118.6 101 60.4
Gorai.001G228900 Gossypium raimondii HOM05D006940 ORTHO05D008626 3.0e-25 118.6 101 60.4
Nitab4.5_0003186g0010 Nicotiana tabacum HOM05D006940 ORTHO05D008626 3.0e-25 118.6 108 56.5
Cpa.g.sc8.85 Carica papaya HOM05D006940 ORTHO05D008626 4.0e-25 118.2 101 59.4
Glyma.08G345100 Glycine max HOM05D006940 ORTHO05D008626 4.0e-25 118.2 113 54.9
Medtr7g052120 Medicago truncatula HOM05D006940 ORTHO05D008626 4.0e-25 118.2 111 57.7
Nn1g08072 Nelumbo nucifera HOM05D006940 ORTHO05D008626 4.0e-25 118.2 109 56.0
arahy.Tifrunner.gnm1.ann1.7YS827 Arachis hypogaea HOM05D006940 ORTHO05D008626 5.2e-25 117.9 108 59.3
Psat0s1437g0080 Pisum sativum HOM05D006940 ORTHO05D008626 5.2e-25 117.9 111 57.7
CiPaw.14G043100 Carya illinoinensis HOM05D006940 ORTHO05D008626 6.8e-25 117.5 107 63.6
Lj1g0019270 Lotus japonicus HOM05D006940 ORTHO05D008626 6.8e-25 117.5 98 62.2
Lalb_Chr21g0315011 Lupinus albus HOM05D006940 ORTHO05D008626 6.8e-25 117.5 115 56.5
TPR.G26809 Trifolium pratense HOM05D006940 ORTHO05D008626 6.8e-25 117.5 111 57.7
Sabra02G0190300 Salix brachista HOM05D006940 ORTHO05D008626 8.9e-25 117.1 89 61.8
CiPaw.13G054100 Carya illinoinensis HOM05D006940 ORTHO05D008626 1.2e-24 116.7 115 60.0
TWI36G1176 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 1.2e-24 116.7 110 58.2
TWI75G1309 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 2.0e-24 115.9 105 56.2
PGSC0003DMG400007740 Solanum tuberosum HOM05D006940 ORTHO05D008626 2.6e-24 115.5 105 58.1
Phvul.008G137700 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 3.4e-24 115.2 111 57.7
Migut.D02467 Erythranthe guttata HOM05D006940 ORTHO05D008626 7.5e-24 114.0 106 57.5
Oeu064661.1 Olea europaea HOM05D006940 ORTHO05D008626 7.5e-24 114.0 101 57.4
BcaB04g17733 Brassica carinata HOM05D006940 ORTHO05D008626 9.8e-24 113.6 52 92.3
A08p07220 Brassica napus HOM05D006940 ORTHO05D008626 9.8e-24 113.6 52 92.3
C08p08940 Brassica napus HOM05D006940 ORTHO05D008626 9.8e-24 113.6 52 92.3
BolC8t47738H Brassica oleracea HOM05D006940 ORTHO05D008626 9.8e-24 113.6 52 92.3
BraA08t32735Z Brassica rapa HOM05D006940 ORTHO05D008626 9.8e-24 113.6 52 92.3
Thhalv10026516m.g Eutrema salsugineum HOM05D006940 ORTHO05D008626 1.3e-23 113.2 50 96.0
Hma1.2p1_0781F.1_g216880 Hydrangea macrophylla HOM05D006940 ORTHO05D008626 1.3e-23 113.2 50 94.0
vmacro02811 Vaccinium macrocarpon HOM05D006940 ORTHO05D008626 1.3e-23 113.2 50 94.0
Sp7g09835 Schrenkiella parvula HOM05D006940 ORTHO05D008626 1.7e-23 112.8 96 58.3
CANSAT01G0416 Cannabis sativa HOM05D006940 ORTHO05D008626 2.2e-23 112.5 104 55.8
CANSAT01G0831 Cannabis sativa HOM05D006940 ORTHO05D008626 2.2e-23 112.5 104 55.8
CANSAT01G1056 Cannabis sativa HOM05D006940 ORTHO05D008626 2.2e-23 112.5 104 55.8
CARHR218280 Cardamine hirsuta HOM05D006940 ORTHO05D008626 2.2e-23 112.5 54 88.9
Aa31sc38G90 Aethionema arabicum HOM05D006940 ORTHO05D008626 2.9e-23 112.1 53 88.7
AT4G12970 Arabidopsis thaliana HOM05D006940 ORTHO05D008626 2.9e-23 112.1 101 59.4
Haze_03308 Corylus avellana HOM05D006940 ORTHO05D008626 2.9e-23 112.1 69 75.4
Sopen08g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 2.9e-23 112.1 105 58.1
PSO675G0779 Papaver somniferum HOM05D006940 ORTHO05D008626 3.7e-23 111.7 111 53.2
AL9U11560 Arabidopsis lyrata HOM05D006940 ORTHO05D008626 4.9e-23 111.3 102 60.8
Lalb_Chr03g0041181 Lupinus albus HOM05D006940 ORTHO05D008626 4.9e-23 111.3 115 52.2
TPR.G2024 Trifolium pratense HOM05D006940 ORTHO05D008626 4.9e-23 111.3 53 86.8
Sc01g0005680 Simmondsia chinensis HOM05D006940 ORTHO05D008626 6.4e-23 110.9 102 55.9
Carub.0007s2980 Capsella rubella HOM05D006940 ORTHO05D008626 8.3e-23 110.5 101 60.4
SalBow6G3514 Salvia bowleyana HOM05D006940 ORTHO05D008626 8.3e-23 110.5 105 54.3
Sopen09g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 1.1e-22 110.2 105 57.1
MBI07_g41210_MAGBIO Magnolia biondii HOM05D006940 ORTHO05D008626 1.4e-22 109.8 118 53.4
Sed0027137 Sechium edule HOM05D006940 ORTHO05D008626 1.8e-22 109.4 103 53.4
VMungo0331G0069 Vigna mungo HOM05D006940 ORTHO05D008626 1.8e-22 109.4 113 52.2
Nn7g37664 Nelumbo nucifera HOM05D006940 ORTHO05D008626 2.4e-22 109.0 93 57.0
PSO017G0530 Papaver somniferum HOM05D006940 ORTHO05D008626 2.4e-22 109.0 111 51.4
Solyc08g066610.3 Solanum lycopersicum HOM05D006940 ORTHO05D008626 2.4e-22 109.0 105 56.2
MSTRG.20995 Avicennia marina HOM05D006940 ORTHO05D008626 3.2e-22 108.6 101 54.5
COL.COLO4_06154 Corchorus olitorius HOM05D006940 ORTHO05D008626 3.2e-22 108.6 79 67.1
HanXRQChr08g0231211 Helianthus annuus HOM05D006940 ORTHO05D008626 3.2e-22 108.6 105 55.2
DCAR_012690 Daucus carota HOM05D000328 ORTHO05D008626 7.0e-22 107.5 76 67.1
SalBow7G1139 Salvia bowleyana HOM05D006940 ORTHO05D008626 7.0e-22 107.5 50 88.0
Phvul.010G031000 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 9.2e-22 107.1 113 51.3
Sed0013755 Sechium edule HOM05D006940 ORTHO05D008626 9.2e-22 107.1 105 55.2
MSTRG.18810 Avicennia marina HOM05D006940 ORTHO05D008626 1.2e-21 106.7 102 53.9
Psat0s4060g0200 Pisum sativum HOM05D006940 ORTHO05D008626 2.7e-21 105.5 95 55.8
GSVIVG01031691001 Vitis vinifera HOM05D006940 ORTHO05D008626 2.7e-21 105.5 47 87.2
Os01g0914400 Oryza sativa ssp. japonica HOM05D006940 ORTHO05D008626 5.9e-21 104.4 117 51.3
THA.LOC104818992 Tarenaya hassleriana HOM05D006940 ORTHO05D008626 7.8e-21 104.0 113 51.3
EL10Ac5g11605 Beta vulgaris HOM05D006940 ORTHO05D008626 1.0e-20 103.6 50 80.0
TAR636G0441 Trochodendron aralioides HOM05D006940 ORTHO05D008626 1.3e-20 103.2 86 65.1
Lsat_1_v5_gn_9_16040 Lactuca sativa HOM05D006940 ORTHO05D008626 1.7e-20 102.8 89 57.3
Zm00001eb143570 Zea mays HOM05D006940 ORTHO05D008626 5.0e-20 101.3 52 76.9
Zm00001eb364920 Zea mays HOM05D006940 ORTHO05D008626 5.0e-20 101.3 52 76.9
Lsat_1_v5_gn_8_97920 Lactuca sativa HOM05D006940 ORTHO05D008626 8.6e-20 100.5 50 82.0
HanXRQChr16g0507861 Helianthus annuus HOM05D006940 ORTHO05D008626 1.9e-19 99.4 54 77.8
ATR0609G114 Amborella trichopoda HOM05D006940 ORTHO05D008626 3.3e-19 98.6 109 49.5
MSTRG.12756 Avicennia marina HOM05D006940 ORTHO05D008626 8.0e-18 94.0 105 47.6
SEGI_36325 Sequoiadendron giganteum HOM05D006940 ORTHO05D008626 3.1e-17 92.0 46 80.4
HPP92_011792 Vanilla planifolia HOM05D006940 ORTHO05D008626 4.0e-17 91.7 109 48.6
AUR62042875 Chenopodium quinoa HOM05D006940 ORTHO05D008626 4.4e-16 88.2 81 48.1
PGSC0003DMG400020111 Solanum tuberosum HOM05D006940 ORTHO05D008626 2.9e-15 85.5 50 76.0
Zm00001eb174960 Zea mays HOM05D006940 ORTHO05D008626 4.9e-15 84.7 49 65.3
SMO351G0191 Selaginella moellendorffii HOM05D006940 ORTHO05D008626 3.2e-14 82.0 49 67.3


User provided reference genes

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