Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 2.1e-54 215.3 99 100.0
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 2.9e-27 125.2 58 98.3
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 2.9e-27 125.2 58 98.3
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 3.2e-26 121.7 58 94.8
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.2e-26 121.7 58 94.8
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.2e-26 121.7 58 94.8
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.2e-26 121.7 58 94.8
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 7.0e-26 120.6 58 93.1
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 3.5e-25 118.2 58 93.1
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 3.5e-25 118.2 58 93.1
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 4.6e-25 117.9 81 70.4
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 7.8e-25 117.1 65 84.6
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 1.0e-24 116.7 58 91.4
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 1.7e-24 115.9 65 83.1
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 2.3e-24 115.5 65 83.1
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 3.0e-24 115.2 58 89.7
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 3.0e-24 115.2 58 91.4
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 3.0e-24 115.2 58 87.9
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 5.0e-24 114.4 58 87.9
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 5.0e-24 114.4 58 87.9
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 6.6e-24 114.0 65 83.1
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 6.6e-24 114.0 58 86.2
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 6.6e-24 114.0 65 81.5
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.1e-23 113.2 58 89.7
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 1.1e-23 113.2 58 89.7
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 1.5e-23 112.8 58 86.2
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 1.9e-23 112.5 58 86.2
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.9e-23 112.5 58 89.7
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.9e-23 112.5 58 87.9
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 2.5e-23 112.1 58 86.2
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 3.3e-23 111.7 58 86.2
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 4.3e-23 111.3 58 84.5
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 5.6e-23 110.9 58 89.7
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 5.6e-23 110.9 65 80.0
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 5.6e-23 110.9 58 86.2
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 5.6e-23 110.9 58 86.2
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 9.5e-23 110.2 65 80.0
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 9.5e-23 110.2 58 84.5
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 9.5e-23 110.2 65 80.0
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 1.2e-22 109.8 58 84.5
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 1.2e-22 109.8 58 87.9
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 1.2e-22 109.8 58 87.9
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 1.6e-22 109.4 65 78.5
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 1.6e-22 109.4 58 87.9
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 2.8e-22 108.6 57 86.0
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 2.8e-22 108.6 57 86.0
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 3.6e-22 108.2 58 81.0
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 3.6e-22 108.2 58 81.0
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 3.6e-22 108.2 58 81.0
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 4.7e-22 107.8 58 81.0
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 6.2e-22 107.5 53 86.8
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 8.0e-22 107.1 58 86.2
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 1.1e-21 106.7 58 81.0
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 1.1e-21 106.7 53 86.8
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 1.1e-21 106.7 58 84.5
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 1.4e-21 106.3 58 82.8
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 1.4e-21 106.3 57 84.2
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.8e-21 105.9 58 82.8
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.8e-21 105.9 57 80.7
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.8e-21 105.9 57 80.7
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 1.8e-21 105.9 58 79.3
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 1.8e-21 105.9 58 81.0
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 2.3e-21 105.5 62 77.4
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 3.1e-21 105.1 58 81.0
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 3.1e-21 105.1 58 77.6
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 3.1e-21 105.1 58 77.6
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 4.0e-21 104.8 57 80.7
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 4.0e-21 104.8 53 83.0
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 4.0e-21 104.8 58 82.8
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 4.0e-21 104.8 58 82.8
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 5.2e-21 104.4 58 79.3
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 5.2e-21 104.4 58 84.5
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 6.8e-21 104.0 59 81.4
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 6.8e-21 104.0 58 81.0
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 8.9e-21 103.6 58 77.6
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 1.2e-20 103.2 58 79.3
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 1.2e-20 103.2 62 77.4
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.5e-20 102.8 53 84.9
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.5e-20 102.8 53 84.9
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 1.5e-20 102.8 58 77.6
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 1.5e-20 102.8 58 79.3
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.5e-20 102.8 58 79.3
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 2.0e-20 102.4 59 83.1
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 2.0e-20 102.4 58 77.6
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 5.8e-20 100.9 58 77.6
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 1.3e-19 99.8 61 70.5
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 1.3e-19 99.8 56 75.0
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 1.3e-19 99.8 56 75.0
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 1.3e-19 99.8 58 79.3
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 1.7e-19 99.4 63 73.0
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 1.7e-19 99.4 58 75.9
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 3.7e-19 98.2 58 79.3
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 4.9e-19 97.8 64 71.9
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 4.9e-19 97.8 64 71.9
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 6.4e-19 97.4 58 70.7
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 6.4e-19 97.4 58 70.7
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 6.4e-19 97.4 58 74.1
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 8.3e-19 97.1 58 79.3
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.9e-18 95.9 57 70.2
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 3.2e-18 95.1 61 68.9
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 4.1e-18 94.7 59 64.4
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 1.2e-17 93.2 58 69.0
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 1.6e-17 92.8 58 72.4
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 2.7e-17 92.0 61 70.5
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 3.5e-17 91.7 58 74.1
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 1.3e-16 89.7 57 71.9
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 1.3e-16 89.7 58 70.7
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 6.6e-16 87.4 58 65.5
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 6.6e-16 87.4 58 65.5
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 8.6e-16 87.0 61 62.3
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 2.8e-14 82.0 53 67.9
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 1.5e-12 76.3 57 56.1
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 2.6e-12 75.5 34 97.1
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 4.9e-11 71.2 49 61.2
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 2.7e-09 65.5 59 54.2
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 2.5e-07 58.9 59 49.2


User provided reference genes

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