Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1159400 Malus domestica HOM05D006407 ORTHO05D008079 2.9e-56 221.9 127 100.0
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 6.3e-19 97.8 66 74.2
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 1.4e-15 86.7 65 64.6
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 8.2e-11 70.9 65 56.9
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 5.3e-10 68.2 65 52.3
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 5.3e-10 68.2 65 53.8
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 2.0e-09 66.2 65 49.2
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 2.0e-09 66.2 65 49.2
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 5.9e-09 64.7 67 52.2
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 7.7e-09 64.3 66 45.5
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 1.0e-08 63.9 66 47.0
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 1.7e-08 63.2 65 50.8
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 1.7e-08 63.2 56 55.4
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 5.0e-08 61.6 66 50.0
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 8.5e-08 60.8 58 46.6
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 8.5e-08 60.8 61 50.8
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 8.5e-08 60.8 69 43.5
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 8.5e-08 60.8 56 55.4
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 8.5e-08 60.8 56 55.4
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 8.5e-08 60.8 78 46.2
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 8.5e-08 60.8 74 43.2
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 1.4e-07 60.1 66 47.0
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 1.9e-07 59.7 68 51.5
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 1.9e-07 59.7 59 54.2
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 2.5e-07 59.3 65 49.2
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 2.5e-07 59.3 65 49.2
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 2.5e-07 59.3 56 55.4
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 3.2e-07 58.9 64 50.0
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 3.2e-07 58.9 64 48.4
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 3.2e-07 58.9 56 48.2
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 3.2e-07 58.9 64 48.4
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 5.5e-07 58.2 64 48.4
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 5.5e-07 58.2 64 48.4
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 7.2e-07 57.8 65 49.2
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 7.2e-07 57.8 65 49.2
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 7.2e-07 57.8 65 49.2
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 7.2e-07 57.8 56 55.4
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 7.2e-07 57.8 65 46.2
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 9.4e-07 57.4 65 47.7
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 1.2e-06 57.0 61 52.5
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 1.2e-06 57.0 61 49.2
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 1.2e-06 57.0 63 47.6
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 1.2e-06 57.0 65 47.7
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 1.6e-06 56.6 64 46.9
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 1.6e-06 56.6 64 46.9
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 1.6e-06 56.6 64 46.9
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 3.6e-06 55.5 61 49.2
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 3.6e-06 55.5 69 43.5
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 3.6e-06 55.5 66 47.0
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 4.7e-06 55.1 62 45.2
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 4.7e-06 55.1 61 41.0
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 4.7e-06 55.1 65 46.2
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 4.7e-06 55.1 66 43.9


User provided reference genes

Program Settings