Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 3.5e-73 278.1 130 100.0
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 1.6e-17 93.2 78 64.1
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 7.3e-15 84.3 78 60.3
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 4.8e-14 81.6 49 77.6
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 6.2e-14 81.3 49 75.5
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 8.1e-14 80.9 49 77.6
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 8.1e-14 80.9 49 79.6
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 8.1e-14 80.9 49 79.6
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 1.1e-13 80.5 49 75.5
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 1.4e-13 80.1 78 59.0
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 1.4e-13 80.1 49 77.6
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 1.4e-13 80.1 51 72.5
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 1.4e-13 80.1 49 79.6
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.8e-13 79.7 49 75.5
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 2.4e-13 79.3 78 57.7
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 2.4e-13 79.3 49 71.4
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 2.4e-13 79.3 49 75.5
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 3.1e-13 79.0 51 74.5
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 3.1e-13 79.0 49 79.6
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 3.1e-13 79.0 49 77.6
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 3.1e-13 79.0 49 77.6
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 3.1e-13 79.0 49 75.5
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 3.1e-13 79.0 49 75.5
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 3.1e-13 79.0 49 75.5
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 3.1e-13 79.0 81 54.3
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 3.1e-13 79.0 49 75.5
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 5.3e-13 78.2 49 75.5
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 5.3e-13 78.2 49 75.5
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 5.3e-13 78.2 49 75.5
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 6.9e-13 77.8 49 77.6
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 6.9e-13 77.8 49 79.6
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 1.2e-12 77.0 49 75.5
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 1.5e-12 76.6 49 73.5
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 1.5e-12 76.6 49 77.6
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 1.5e-12 76.6 49 73.5
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 1.5e-12 76.6 49 71.4
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 1.5e-12 76.6 51 74.5
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 2.0e-12 76.3 49 75.5
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 2.0e-12 76.3 51 68.6
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 2.0e-12 76.3 118 43.2
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 2.0e-12 76.3 49 75.5
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 2.0e-12 76.3 49 73.5
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 2.0e-12 76.3 49 79.6
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 2.0e-12 76.3 49 73.5
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 2.6e-12 75.9 49 75.5
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 2.6e-12 75.9 85 49.4
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 2.6e-12 75.9 51 76.5
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.6e-12 75.9 49 71.4
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.6e-12 75.9 49 71.4
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.6e-12 75.9 49 71.4
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 2.6e-12 75.9 49 73.5
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 3.4e-12 75.5 51 66.7
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 3.4e-12 75.5 49 73.5
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 3.4e-12 75.5 49 75.5
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 4.4e-12 75.1 49 67.3
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 4.4e-12 75.1 49 69.4
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 4.4e-12 75.1 49 73.5
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 4.4e-12 75.1 49 71.4
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 5.8e-12 74.7 49 73.5
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 5.8e-12 74.7 49 73.5
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 5.8e-12 74.7 49 73.5
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 5.8e-12 74.7 51 66.7
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 7.6e-12 74.3 49 69.4
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 7.6e-12 74.3 49 73.5
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 7.6e-12 74.3 49 77.6
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 7.6e-12 74.3 49 77.6
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 7.6e-12 74.3 49 69.4
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 7.6e-12 74.3 49 75.5
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 9.9e-12 73.9 49 71.4
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 9.9e-12 73.9 51 66.7
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 1.3e-11 73.6 49 71.4
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 1.3e-11 73.6 49 67.3
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.7e-11 73.2 49 75.5
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 2.2e-11 72.8 51 62.7
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 2.2e-11 72.8 49 69.4
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 2.9e-11 72.4 57 61.4
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 2.9e-11 72.4 49 69.4
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 3.8e-11 72.0 51 64.7
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.8e-11 72.0 49 75.5
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 4.9e-11 71.6 49 75.5
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 4.9e-11 71.6 49 65.3
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 6.4e-11 71.2 51 64.7
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 6.4e-11 71.2 49 65.3
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 8.4e-11 70.9 49 73.5
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 1.1e-10 70.5 49 65.3
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 1.1e-10 70.5 49 67.3
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 1.4e-10 70.1 49 73.5
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.4e-10 70.1 49 65.3
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 1.9e-10 69.7 49 63.3
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 3.2e-10 68.9 51 62.7
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 4.2e-10 68.6 55 60.0
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 5.4e-10 68.2 49 61.2
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 9.3e-10 67.4 51 60.8
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 9.3e-10 67.4 49 63.3
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 2.1e-09 66.2 49 63.3
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 2.1e-09 66.2 49 61.2
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 2.7e-09 65.9 49 57.1
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 4.6e-09 65.1 49 63.3
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 4.6e-09 65.1 49 63.3
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 4.6e-09 65.1 49 63.3
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 4.6e-09 65.1 51 62.7
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.0e-08 63.9 44 70.5
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 1.0e-08 63.9 78 50.0
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 1.0e-08 63.9 49 59.2
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 1.7e-08 63.2 49 61.2
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 2.3e-08 62.8 50 60.0
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 2.3e-08 62.8 51 58.8
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 3.0e-08 62.4 51 58.8
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 3.0e-08 62.4 51 58.8
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 3.0e-08 62.4 51 60.8
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 3.9e-08 62.0 78 50.0
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 5.1e-08 61.6 52 61.5
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 8.7e-08 60.8 52 61.5
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 8.7e-08 60.8 51 56.9
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 1.5e-07 60.1 49 53.1
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 3.3e-07 58.9 52 57.7
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 3.3e-07 58.9 51 56.9
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 3.3e-07 58.9 49 57.1
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 3.3e-07 58.9 49 57.1
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 7.3e-07 57.8 52 59.6
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 3.6e-06 55.5 50 60.0


User provided reference genes

Program Settings