Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 2.7e-103 379.4 314 100.0
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 2.1e-79 300.1 320 84.4
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 1.6e-52 210.7 327 72.5
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 2.8e-52 209.9 324 75.0
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 4.8e-52 209.1 327 73.1
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 3.1e-51 206.5 327 71.9
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 4.5e-42 176.0 315 64.8
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 1.3e-41 174.5 315 64.4
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 8.7e-38 161.8 327 58.7
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 6.3e-36 155.6 307 65.1
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 1.2e-34 151.4 294 65.3
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 1.5e-34 151.0 277 67.9
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 1.0e-33 148.3 320 61.6
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 1.3e-33 147.9 277 67.5
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 1.7e-33 147.5 163 52.8
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 2.2e-33 147.1 291 58.4
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 3.8e-33 146.4 322 57.8
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 1.9e-32 144.1 284 66.2
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 1.9e-32 144.1 325 58.5
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 2.5e-32 143.7 270 63.7
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 2.5e-32 143.7 315 57.1
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 2.5e-32 143.7 294 61.2
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 3.2e-32 143.3 328 61.3
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 4.2e-32 142.9 322 60.6
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 4.2e-32 142.9 281 50.9
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 4.2e-32 142.9 323 60.1
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 5.5e-32 142.5 164 53.0
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 5.5e-32 142.5 280 62.9
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 7.2e-32 142.1 272 63.2
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 9.3e-32 141.7 164 53.0
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 1.6e-31 141.0 315 62.5
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 1.6e-31 141.0 384 54.4
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 2.1e-31 140.6 173 51.4
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 3.6e-31 139.8 266 68.8
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 6.1e-31 139.0 303 64.0
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 7.9e-31 138.7 304 55.3
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 1.0e-30 138.3 324 60.5
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.0e-30 138.3 305 61.6
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 1.0e-30 138.3 284 64.1
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 1.3e-30 137.9 141 54.6
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 1.8e-30 137.5 330 55.2
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.8e-30 137.5 287 62.4
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.8e-30 137.5 303 62.4
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 2.3e-30 137.1 317 59.0
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 3.0e-30 136.7 350 53.1
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 3.0e-30 136.7 169 49.7
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 3.0e-30 136.7 164 51.2
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 3.9e-30 136.3 312 60.6
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 8.7e-30 135.2 314 55.1
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.9e-29 134.0 309 62.5
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 2.5e-29 133.7 313 55.9
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 3.3e-29 133.3 309 58.3
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 3.3e-29 133.3 167 50.9
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 3.3e-29 133.3 318 59.4
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 7.4e-29 132.1 303 60.1
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 7.4e-29 132.1 311 60.8
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 2.2e-28 130.6 367 54.2
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 2.8e-28 130.2 265 63.0
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 3.7e-28 129.8 291 60.8
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 4.8e-28 129.4 222 76.1
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 8.2e-28 128.6 370 50.0
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 1.4e-27 127.9 331 53.2
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 1.8e-27 127.5 287 62.4
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 2.4e-27 127.1 290 57.9
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 3.1e-27 126.7 277 59.2
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 3.1e-27 126.7 187 80.2
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 3.1e-27 126.7 374 51.3
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 5.3e-27 125.9 268 59.7
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 9.0e-27 125.2 290 63.1
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 9.0e-27 125.2 293 65.5
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 2.6e-26 123.6 159 53.5
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 3.4e-26 123.2 318 60.4
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 4.5e-26 122.9 147 53.1
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 5.9e-26 122.5 142 55.6
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 7.7e-26 122.1 310 57.1
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 7.7e-26 122.1 200 81.5
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 1.3e-25 121.3 310 56.1
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 2.2e-25 120.6 279 61.3
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 5.0e-25 119.4 244 65.6
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 8.5e-25 118.6 184 84.2
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 8.5e-25 118.6 312 57.1
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 8.5e-25 118.6 273 56.4
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 2.5e-24 117.1 272 64.0
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 5.5e-24 115.9 239 69.0
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 5.5e-24 115.9 187 79.7
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 7.2e-24 115.5 248 67.7
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 9.4e-24 115.2 229 69.4
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 2.1e-23 114.0 276 60.1
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 3.6e-23 113.2 248 46.4
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 4.6e-23 112.8 128 52.3
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 4.6e-23 112.8 153 46.4
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 4.6e-23 112.8 364 49.7
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 6.1e-23 112.5 295 60.0
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 7.9e-23 112.1 187 77.5
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 1.4e-22 111.3 187 78.1
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 1.8e-22 110.9 246 66.7
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 1.8e-22 110.9 273 55.7
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 1.8e-22 110.9 258 56.2
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 8.8e-22 108.6 124 51.6
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 1.1e-21 108.2 56 94.6
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 1.5e-21 107.8 246 46.3
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 4.3e-21 106.3 182 83.0
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 1.3e-20 104.8 362 49.4
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 4.8e-20 102.8 56 89.3
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 4.1e-19 99.8 96 59.4
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 9.1e-19 98.6 271 45.0
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 2.0e-18 97.4 137 47.4
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 2.2e-17 94.0 219 38.8
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 6.5e-17 92.4 132 48.5
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 1.4e-16 91.3 132 43.9
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 5.5e-16 89.4 294 28.9
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 2.3e-14 84.0 187 72.2
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.5e-13 81.3 46 87.0
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 1.7e-12 77.8 223 64.6
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 5.3e-11 72.8 36 97.2
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 3.5e-10 70.1 82 45.1
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 7.7e-10 68.9 150 90.7
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 1.0e-09 68.6 82 43.9
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 2.9e-09 67.0 56 53.6
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 5.5e-08 62.8 52 55.8
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 7.2e-08 62.4 54 57.4
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 7.2e-08 62.4 54 57.4
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 1.2e-07 61.6 82 39.0
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 1.6e-07 61.2 106 36.8
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.6e-07 61.2 56 48.2
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 1.6e-07 61.2 85 40.0
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 2.7e-07 60.5 43 69.8
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 6.1e-07 59.3 94 37.2
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 1.0e-06 58.5 53 49.1
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 1.0e-06 58.5 124 33.1
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 1.0e-06 58.5 107 33.6
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 1.0e-06 58.5 57 49.1
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 1.4e-06 58.2 56 46.4
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 2.3e-06 57.4 53 47.2
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 3.0e-06 57.0 57 45.6
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 4.0e-06 56.6 48 52.1


User provided reference genes

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