Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 4.2e-94 348.2 200 100.0
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 3.5e-93 345.1 200 97.0
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 2.6e-72 275.8 203 81.8
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 4.8e-66 255.0 193 75.1
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.8e-65 253.1 193 77.2
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 5.3e-65 251.5 193 74.6
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 9.1e-65 250.8 193 74.1
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 1.6e-64 250.0 193 75.6
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 5.9e-64 248.1 193 76.2
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 1.7e-63 246.5 200 70.0
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 6.5e-63 244.6 193 73.1
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 8.0e-61 237.7 200 71.0
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 3.3e-59 232.3 203 70.0
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 9.7e-59 230.7 195 70.3
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 2.8e-58 229.2 190 68.4
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 8.2e-58 227.6 194 70.6
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 8.2e-58 227.6 188 71.8
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 1.8e-57 226.5 193 69.4
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 1.8e-57 226.5 193 68.9
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 3.1e-57 225.7 190 68.4
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 7.0e-57 224.6 191 68.6
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 1.2e-56 223.8 193 69.9
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 1.6e-56 223.4 191 70.7
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 1.3e-55 220.3 195 63.6
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 1.1e-54 217.2 191 69.1
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 2.5e-54 216.1 191 67.5
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 3.2e-54 215.7 200 64.5
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 5.5e-54 214.9 195 66.7
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 7.2e-54 214.5 192 69.8
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 7.2e-54 214.5 193 66.8
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 9.4e-54 214.2 201 69.2
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.6e-53 213.4 197 61.9
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 8.0e-53 211.1 199 66.3
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 4.0e-52 208.8 190 66.8
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 5.2e-52 208.4 198 66.7
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 6.8e-52 208.0 190 68.4
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 8.8e-52 207.6 191 63.9
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 8.8e-52 207.6 197 61.9
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 9.8e-51 204.1 190 66.8
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 2.8e-50 202.6 194 64.9
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 6.3e-50 201.4 201 64.2
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 8.3e-50 201.1 196 65.8
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 1.1e-49 200.7 192 66.1
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 1.8e-49 199.9 199 66.3
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 5.4e-49 198.4 196 64.8
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 5.4e-49 198.4 201 60.7
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 1.2e-48 197.2 188 67.6
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.2e-48 197.2 192 65.1
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 1.2e-48 197.2 183 65.0
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 4.5e-48 195.3 190 66.8
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 4.5e-48 195.3 183 68.9
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 5.9e-48 194.9 164 67.1
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 7.7e-48 194.5 188 62.2
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.0e-47 194.1 191 63.4
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.7e-47 193.4 194 62.4
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 2.3e-47 193.0 194 61.3
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 5.0e-47 191.8 193 65.3
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 1.1e-46 190.7 202 62.4
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 1.1e-46 190.7 197 61.9
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 2.5e-46 189.5 192 64.6
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 5.5e-46 188.3 188 66.5
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 7.2e-46 188.0 198 61.6
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 7.2e-46 188.0 190 63.2
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 2.1e-45 186.4 164 64.0
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 8.0e-45 184.5 189 63.0
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 8.0e-45 184.5 189 64.0
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 1.0e-44 184.1 164 64.0
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 1.5e-43 180.3 197 58.9
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 5.7e-43 178.3 206 55.8
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 5.7e-43 178.3 184 64.1
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 5.7e-43 178.3 194 59.3
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 7.5e-43 177.9 188 61.2
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 9.8e-43 177.6 195 61.0
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 9.8e-43 177.6 195 61.0
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 9.8e-43 177.6 195 61.0
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 1.3e-42 177.2 198 60.1
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 1.3e-42 177.2 189 63.0
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 1.3e-42 177.2 194 62.4
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 2.8e-42 176.0 203 60.1
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 2.8e-42 176.0 191 60.7
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 3.7e-42 175.6 194 61.3
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 3.7e-42 175.6 194 61.3
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 6.3e-42 174.9 189 62.4
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 6.3e-42 174.9 155 72.9
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 8.3e-42 174.5 203 59.6
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.8e-41 173.3 192 60.4
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 2.4e-41 172.9 198 61.1
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 5.4e-41 171.8 191 60.2
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 9.2e-41 171.0 195 60.5
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 3.5e-40 169.1 190 60.5
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 2.3e-39 166.4 192 60.9
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 2.3e-39 166.4 190 60.5
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 3.8e-39 165.6 151 72.8
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 5.0e-39 165.2 203 57.1
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 6.6e-39 164.9 195 61.5
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 8.6e-39 164.5 199 57.3
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 1.9e-38 163.3 132 69.7
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 3.3e-38 162.5 151 70.9
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 7.3e-38 161.4 197 60.9
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 9.5e-38 161.0 196 48.5
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 1.2e-37 160.6 197 60.4
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 1.2e-37 160.6 194 57.2
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 4.7e-37 158.7 195 55.9
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 1.0e-36 157.5 136 69.1
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 3.0e-36 156.0 132 67.4
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 5.2e-36 155.2 200 54.5
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 8.9e-36 154.5 189 57.1
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 2.6e-35 152.9 187 57.2
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 2.6e-35 152.9 187 57.2
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.3e-34 150.6 135 68.1
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 3.7e-34 149.1 188 47.3
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 3.7e-34 149.1 180 50.6
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 1.4e-33 147.1 200 53.0
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 3.2e-33 146.0 196 52.6
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 7.0e-33 144.8 135 66.7
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 1.6e-32 143.7 196 44.4
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 4.6e-32 142.1 188 53.2
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 2.3e-31 139.8 183 48.1
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 1.9e-30 136.7 114 60.5
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 2.5e-30 136.3 118 74.6
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 4.7e-29 132.1 155 58.7
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 2.6e-27 126.3 130 54.6
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 3.4e-27 125.9 119 58.8
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 2.3e-23 113.2 202 50.0
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 8.1e-21 104.8 102 60.8
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 2.6e-19 99.8 184 47.3
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 7.5e-19 98.2 125 48.0
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 9.9e-19 97.8 105 69.5
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.2e-16 90.9 110 51.8
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 3.0e-15 86.3 111 49.5
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 1.5e-14 84.0 85 52.9
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 1.2e-11 74.3 135 50.4
FvH4_3g27021 Fragaria vesca HOM05D005729 ORTHO05D007026 2.0e-11 73.6 72 56.9
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 7.6e-11 71.6 65 61.5
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 9.9e-11 71.2 184 42.9
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 9.6e-06 54.7 59 49.2


User provided reference genes

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