Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1137100 Malus domestica HOM05D001842 ORTHO05D001849 3.0e-38 161.4 83 100.0
MD05G1135500 Malus domestica HOM05D001842 ORTHO05D001849 1.7e-28 129.0 71 94.4
MD10G1140800 Malus domestica HOM05D001842 ORTHO05D001849 6.3e-28 127.1 71 91.5
MD05G1136000 Malus domestica HOM05D001842 ORTHO05D001849 3.1e-27 124.8 72 88.9
Prupe.8G179600 Prunus persica HOM05D001842 ORTHO05D001849 1.9e-24 115.5 71 81.7
MD05G1138200 Malus domestica HOM05D001842 ORTHO05D001849 8.0e-15 83.6 52 84.6
QL11p056280 Quercus lobata HOM05D001842 ORTHO05D001849 1.8e-14 82.4 71 69.0
CiPaw.06G115800 Carya illinoinensis HOM05D001842 ORTHO05D001849 5.2e-14 80.9 71 64.8
FAN27G0714 Fragaria x ananassa HOM05D001842 ORTHO05D001849 6.8e-14 80.5 55 74.5
FAN24G0597 Fragaria x ananassa HOM05D001842 ORTHO05D001849 8.8e-14 80.1 55 76.4
RcHm_v2.0_Chr6g0280871 Rosa chinensis HOM05D001842 ORTHO05D001849 3.4e-13 78.2 55 74.5
FvH4_2g16750 Fragaria vesca HOM05D001842 ORTHO05D001849 4.4e-13 77.8 55 74.5
Cfa005365 Carpinus fangiana HOM05D001842 ORTHO05D001849 9.8e-13 76.6 71 63.4
VMungo0647G1618 Vigna mungo HOM05D001842 ORTHO05D001849 1.7e-12 75.9 71 62.0
Glyma.14G001200 Glycine max HOM05D001842 ORTHO05D001849 2.8e-12 75.1 69 62.3
FAN15G0485 Fragaria x ananassa HOM05D001842 ORTHO05D001849 3.7e-12 74.7 55 70.9
Aqoxy6G01606 Aquilegia oxysepala HOM05D001842 ORTHO05D001849 6.3e-12 73.9 68 63.2
TAR376G0454 Trochodendron aralioides HOM05D001842 ORTHO05D001849 8.3e-12 73.6 68 66.2
Lj2C501G4 Lonicera japonica HOM05D001842 ORTHO05D001849 1.1e-11 73.2 70 62.9
Psat2g000840 Pisum sativum HOM05D001842 ORTHO05D001849 1.4e-11 72.8 67 61.2
Phvul.008G292100 Phaseolus vulgaris HOM05D001842 ORTHO05D001849 1.8e-11 72.4 69 59.4
TPR.G18637 Trifolium pratense HOM05D001842 ORTHO05D001849 1.8e-11 72.4 69 60.9
DCAR_016693 Daucus carota HOM05D001842 ORTHO05D001849 2.4e-11 72.0 72 59.7
Medtr5g099170 Medicago truncatula HOM05D001842 ORTHO05D001849 2.4e-11 72.0 71 59.2
Glyma.02G311333 Glycine max HOM05D001842 ORTHO05D001849 7.0e-11 70.5 69 59.4
GSVIVG01023872001 Vitis vinifera HOM05D001842 ORTHO05D001849 1.6e-10 69.3 71 56.3
Dinv28318 Davidia involucrata HOM05D001842 ORTHO05D001849 2.0e-10 68.9 67 59.7
LjContig00081g0008818 Lotus japonicus HOM05D001842 ORTHO05D001849 2.7e-10 68.6 70 61.4
PSO541G1162 Papaver somniferum HOM05D001842 ORTHO05D001849 2.7e-10 68.6 72 59.7
PSO675G7298 Papaver somniferum HOM05D001842 ORTHO05D001849 2.7e-10 68.6 72 59.7
Ca_06502_v3 Cicer arietinum L. HOM05D001842 ORTHO05D001849 4.5e-10 67.8 69 56.5
Medtr1g018480 Medicago truncatula HOM05D001842 ORTHO05D001849 5.9e-10 67.4 70 55.7
Nitab4.5_0000467g0080 Nicotiana tabacum HOM05D001842 ORTHO05D001849 5.9e-10 67.4 70 57.1
arahy.Tifrunner.gnm1.ann1.RT0S28 Arachis hypogaea HOM05D001842 ORTHO05D001849 7.7e-10 67.0 71 59.2
vmacro20625 Vaccinium macrocarpon HOM05D001842 ORTHO05D001849 7.7e-10 67.0 69 60.9
MELO3C013251.2 Cucumis melo HOM05D001842 ORTHO05D001849 1.0e-09 66.6 71 53.5
Lalb_Chr04g0246921 Lupinus albus HOM05D001842 ORTHO05D001849 1.0e-09 66.6 69 58.0
HanXRQChr14g0442891 Helianthus annuus HOM05D001842 ORTHO05D001849 1.3e-09 66.2 59 64.4
Dinv40195 Davidia involucrata HOM05D001842 ORTHO05D001849 1.7e-09 65.9 66 57.6
TAR628G0545 Trochodendron aralioides HOM05D001842 ORTHO05D001849 2.9e-09 65.1 68 63.2
Nitab4.5_0001365g0070 Nicotiana tabacum HOM05D001842 ORTHO05D001849 5.0e-09 64.3 70 55.7
Nitab4.5_0001467g0060 Nicotiana tabacum HOM05D001842 ORTHO05D001849 5.0e-09 64.3 70 55.7
Rhsim10G0194400 Rhododendron simsii HOM05D001842 ORTHO05D001849 6.5e-09 63.9 68 57.4
Atru.chr3.124 Acer truncatum HOM05D001842 ORTHO05D001849 8.5e-09 63.5 62 59.7
Peaxi162Scf00580g00016 Petunia axillaris HOM05D001842 ORTHO05D001849 8.5e-09 63.5 70 52.9
ClCG02G003430 Citrullus lanatus HOM05D001842 ORTHO05D001849 1.1e-08 63.2 71 53.5
Cpa.g.sc6.364 Carica papaya HOM05D001842 ORTHO05D001849 1.5e-08 62.8 71 53.5
CsaV3_7G001880 Cucumis sativus L. HOM05D001842 ORTHO05D001849 1.5e-08 62.8 71 52.1
Manes.01G155900 Manihot esculenta HOM05D001842 ORTHO05D001849 1.5e-08 62.8 71 54.9
Nn6g31683 Nelumbo nucifera HOM05D001842 ORTHO05D001849 1.5e-08 62.8 72 58.3
Solyc02g038812.1 Solanum lycopersicum HOM05D001842 ORTHO05D001849 1.5e-08 62.8 70 54.3
Thecc.01G004600 Theobroma cacao HOM05D001842 ORTHO05D001849 1.5e-08 62.8 66 56.1
arahy.Tifrunner.gnm1.ann1.1FV09I Arachis hypogaea HOM05D001842 ORTHO05D001849 1.9e-08 62.4 71 54.9
arahy.Tifrunner.gnm1.ann1.649J27 Arachis hypogaea HOM05D001842 ORTHO05D001849 1.9e-08 62.4 71 54.9
CSS0011105 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D001849 1.9e-08 62.4 68 55.9
CAN.G328.10 Capsicum annuum HOM05D001842 ORTHO05D001849 1.9e-08 62.4 67 53.7
CiPaw.05G092800 Carya illinoinensis HOM05D001842 ORTHO05D001849 1.9e-08 62.4 71 54.9
Cc07_g11940 Coffea canephora HOM05D001842 ORTHO05D001849 1.9e-08 62.4 64 50.0
Sed0009695 Sechium edule HOM05D001842 ORTHO05D001849 1.9e-08 62.4 77 49.4
Carub.0001s2105 Capsella rubella HOM05D001842 ORTHO05D001849 2.5e-08 62.0 70 57.1
ECA238G3849 Erigeron canadensis HOM05D001842 ORTHO05D001849 2.5e-08 62.0 66 57.6
Nitab4.5_0007782g0070 Nicotiana tabacum HOM05D001842 ORTHO05D001849 2.5e-08 62.0 70 54.3
arahy.Tifrunner.gnm1.ann1.84FHQN Arachis hypogaea HOM05D001842 ORTHO05D001849 3.2e-08 61.6 71 53.5
Duzib264G1083 Durio zibethinus HOM05D001842 ORTHO05D001849 3.2e-08 61.6 61 59.0
Nn5g30998 Nelumbo nucifera HOM05D001842 ORTHO05D001849 3.2e-08 61.6 69 58.0
TWI53G0649 Tripterygium wilfordii HOM05D001842 ORTHO05D001849 3.2e-08 61.6 69 52.2
BraA08t34820Z Brassica rapa HOM05D001842 ORTHO05D001849 4.2e-08 61.2 63 57.1
Ciclev10024733m.g Citrus clementina HOM05D001842 ORTHO05D001849 4.2e-08 61.2 64 53.1
COL.COLO4_22557 Corchorus olitorius HOM05D001842 ORTHO05D001849 4.2e-08 61.2 69 56.5
Eucgr.G01875 Eucalyptus grandis HOM05D001842 ORTHO05D001849 4.2e-08 61.2 71 53.5
MD05G1145300 Malus domestica HOM05D001842 ORTHO05D001849 4.2e-08 61.2 33 90.9
Oeu012542.1 Olea europaea HOM05D001842 ORTHO05D001849 5.5e-08 60.8 67 49.3
Hund06365 Selenicereus undatus HOM05D001842 ORTHO05D001849 5.5e-08 60.8 71 53.5
A08p28890 Brassica napus HOM05D001842 ORTHO05D001849 7.2e-08 60.5 63 57.1
C08p20960 Brassica napus HOM05D001842 ORTHO05D001849 7.2e-08 60.5 63 57.1
Sc05g0006840 Simmondsia chinensis HOM05D001842 ORTHO05D001849 7.2e-08 60.5 73 50.7
Actinidia22891 Actinidia chinensis HOM05D001842 ORTHO05D001849 1.2e-07 59.7 68 54.4
BcaB03g14261 Brassica carinata HOM05D001842 ORTHO05D001849 1.2e-07 59.7 63 57.1
A07p14990 Brassica napus HOM05D001842 ORTHO05D001849 1.2e-07 59.7 63 57.1
BraA07t29245Z Brassica rapa HOM05D001842 ORTHO05D001849 1.2e-07 59.7 63 57.1
Lsat_1_v5_gn_2_73740 Lactuca sativa HOM05D001842 ORTHO05D001849 1.2e-07 59.7 59 59.3
Sopen02g012560 Solanum pennellii HOM05D001842 ORTHO05D001849 1.2e-07 59.7 70 52.9
BcaB07g32156 Brassica carinata HOM05D001842 ORTHO05D001849 2.1e-07 58.9 63 57.1
Oeu039712.1 Olea europaea HOM05D001842 ORTHO05D001849 2.1e-07 58.9 57 56.1
THA.LOC104812085 Tarenaya hassleriana HOM05D001842 ORTHO05D001849 2.1e-07 58.9 68 51.5
TWI09G0475 Tripterygium wilfordii HOM05D001842 ORTHO05D001849 2.1e-07 58.9 73 50.7
BcaC05g26080 Brassica carinata HOM05D001842 ORTHO05D001849 2.7e-07 58.5 63 57.1
BolC8t49733H Brassica oleracea HOM05D001842 ORTHO05D001849 2.7e-07 58.5 63 55.6
BraA06t24862Z Brassica rapa HOM05D001842 ORTHO05D001849 2.7e-07 58.5 63 57.1
SalBow5G1010 Salvia bowleyana HOM05D001842 ORTHO05D001849 2.7e-07 58.5 62 56.5
AL1G34770 Arabidopsis lyrata HOM05D001842 ORTHO05D001849 3.6e-07 58.2 72 55.6
Potri.007G063200 Populus trichocarpa HOM05D001842 ORTHO05D001849 3.6e-07 58.2 60 55.0
Sabra05G0084600 Salix brachista HOM05D001842 ORTHO05D001849 3.6e-07 58.2 48 64.6
Sp1g19150 Schrenkiella parvula HOM05D001842 ORTHO05D001849 3.6e-07 58.2 63 57.1
BcaC06g34897 Brassica carinata HOM05D001842 ORTHO05D001849 6.1e-07 57.4 63 55.6
C07p22040 Brassica napus HOM05D001842 ORTHO05D001849 6.1e-07 57.4 63 55.6
BolC7t42734H Brassica oleracea HOM05D001842 ORTHO05D001849 6.1e-07 57.4 63 55.6
MD05G1149300 Malus domestica HOM05D001842 ORTHO05D001849 6.1e-07 57.4 33 87.9
Sed0023090 Sechium edule HOM05D001842 ORTHO05D001849 6.1e-07 57.4 71 52.1
THA.LOC104813678 Tarenaya hassleriana HOM05D001842 ORTHO05D001849 6.1e-07 57.4 68 48.5
CSS0024804 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D001849 8.0e-07 57.0 68 55.9
CSS0030981 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D001849 8.0e-07 57.0 68 55.9
CARHR021980 Cardamine hirsuta HOM05D001842 ORTHO05D001849 8.0e-07 57.0 70 54.3
MBI05_g14363_MAGBIO Magnolia biondii HOM05D001842 ORTHO05D001849 8.0e-07 57.0 69 53.6
Lsat_1_v5_gn_2_57661 Lactuca sativa HOM05D001814 ORTHO05D001845 1.0e-06 56.6 69 55.1
Sed0008264 Sechium edule HOM05D001842 ORTHO05D001849 1.0e-06 56.6 71 52.1
Gohir.D07G178300 Gossypium hirsutum HOM05D001842 ORTHO05D001849 1.8e-06 55.8 61 54.1
AT1G21630 Arabidopsis thaliana HOM05D001842 ORTHO05D001849 2.3e-06 55.5 72 52.8
Thhalv10006584m.g Eutrema salsugineum HOM05D001842 ORTHO05D001849 2.3e-06 55.5 63 55.6
Gorai.001G199400 Gossypium raimondii HOM05D001842 ORTHO05D001849 2.3e-06 55.5 61 54.1
HanXRQChr09g0259431 Helianthus annuus HOM05D001842 ORTHO05D001849 2.3e-06 55.5 78 50.0
SHI29549 Sapria himalayana HOM05D001842 ORTHO05D001849 2.3e-06 55.5 63 54.0
A06p17700 Brassica napus HOM05D001842 ORTHO05D001849 3.0e-06 55.1 62 54.8
PGR042G2901 Punica granatum HOM05D001842 ORTHO05D001849 3.0e-06 55.1 66 48.5
BolC5t30758H Brassica oleracea HOM05D001842 ORTHO05D001849 4.0e-06 54.7 63 55.6
Potri.005G102200 Populus trichocarpa HOM05D001842 ORTHO05D001849 4.0e-06 54.7 56 55.4
Gohir.A07G171600 Gossypium hirsutum HOM05D001842 ORTHO05D001849 8.8e-06 53.5 61 52.5
unitig_88.g27776 Utricularia gibba HOM05D001842 ORTHO05D001849 8.8e-06 53.5 66 48.5


User provided reference genes

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