Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 1.0e-140 503.4 262 100.0
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 1.1e-107 393.7 262 83.6
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 4.4e-75 285.4 275 62.9
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 1.4e-65 253.8 273 57.5
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.6e-61 240.4 276 56.2
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 7.0e-57 224.9 273 53.8
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 7.0e-57 224.9 270 53.7
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 9.1e-57 224.6 284 51.1
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.5e-56 222.2 273 52.0
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 4.5e-56 222.2 273 52.0
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 8.6e-55 218.0 284 51.4
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.9e-54 216.9 275 54.9
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 4.2e-54 215.7 274 51.5
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 2.1e-53 213.4 278 51.4
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 2.8e-53 213.0 252 54.4
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 4.7e-53 212.2 250 55.2
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 6.1e-53 211.8 273 53.1
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 8.0e-53 211.5 281 51.6
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 5.2e-52 208.8 275 53.1
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 6.8e-52 208.4 266 51.9
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 8.9e-52 208.0 277 49.1
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 1.2e-51 207.6 272 52.2
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 2.0e-51 206.8 276 48.9
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 2.0e-51 206.8 275 49.8
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 2.6e-51 206.5 274 50.4
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 3.4e-51 206.1 270 51.5
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 5.7e-51 205.3 273 52.0
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 1.7e-50 203.8 276 48.6
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 3.7e-50 202.6 277 50.9
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.1e-49 201.1 264 51.5
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.4e-49 200.7 264 51.9
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 3.2e-49 199.5 275 51.6
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 4.1e-49 199.1 267 49.8
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 7.0e-49 198.4 275 48.4
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.6e-48 197.2 232 52.2
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 3.5e-48 196.1 273 50.5
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 5.9e-48 195.3 278 48.2
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 7.8e-48 194.9 277 47.7
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 4.3e-46 189.1 272 47.8
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 7.3e-46 188.3 261 47.1
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 9.5e-46 188.0 281 47.3
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 1.4e-44 184.1 283 49.1
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 2.3e-44 183.3 274 46.0
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 8.9e-44 181.4 285 48.1
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 6.4e-42 175.3 282 46.5
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 4.1e-41 172.6 253 47.0
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.2e-40 171.0 258 46.9
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.0e-39 167.9 253 46.2
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 1.7e-39 167.2 269 46.5
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.7e-39 167.2 611 30.0
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 3.0e-39 166.4 140 69.3
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 3.0e-39 166.4 277 44.8
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.9e-39 166.0 140 68.6
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.9e-39 166.0 140 68.6
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 6.6e-39 165.2 273 45.4
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.3e-38 162.9 137 69.3
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.3e-38 162.5 229 47.6
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.2e-37 158.7 610 29.3
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 6.2e-37 158.7 258 46.9
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 3.1e-36 156.4 252 44.8
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 8.9e-36 154.8 263 41.1
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 4.4e-35 152.5 265 45.3
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 5.8e-35 152.1 282 44.0
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.2e-33 146.4 261 44.4
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.2e-33 144.8 254 44.1
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 6.0e-32 142.1 266 41.0
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 7.8e-32 141.7 269 41.3
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 7.8e-32 141.7 250 43.6
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 2.3e-31 140.2 227 44.5
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 1.2e-29 134.4 229 43.2
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 6.2e-29 132.1 210 45.2
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 3.1e-28 129.8 262 42.4
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 9.9e-27 124.8 272 39.0
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 9.9e-27 124.8 266 41.4
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 8.3e-26 121.7 239 41.4
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 8.3e-26 121.7 228 39.9
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 4.1e-25 119.4 254 38.6
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 7.1e-25 118.6 248 41.1
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 9.2e-25 118.2 269 38.7
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 3.5e-24 116.3 262 37.8
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.9e-23 112.8 204 39.7
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.9e-23 112.8 111 63.1
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 5.1e-23 112.5 262 37.8
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 8.6e-23 111.7 251 37.8
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 5.6e-22 109.0 262 38.2
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 5.6e-22 109.0 262 37.4
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 1.2e-21 107.8 255 38.4
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 4.7e-21 105.9 169 41.4
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 6.2e-21 105.5 199 38.7
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.4e-20 104.4 247 36.0
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 3.1e-20 103.2 281 34.5
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 5.2e-20 102.4 255 36.1
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 8.9e-20 101.7 248 34.7
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 1.2e-19 101.3 256 35.2
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.4e-19 99.4 262 37.0
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 4.4e-19 99.4 278 35.3
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 4.4e-19 99.4 218 38.5
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 5.8e-19 99.0 249 36.1
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 3.2e-17 93.2 119 48.7
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 4.2e-17 92.8 254 34.6
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 4.2e-17 92.8 262 33.6
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 9.3e-17 91.7 266 31.2
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 1.6e-16 90.9 120 48.3
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 2.7e-16 90.1 240 37.5
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 2.7e-16 90.1 121 47.9
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 3.5e-16 89.7 81 59.3
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 6.0e-16 89.0 217 35.0
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 6.0e-16 89.0 83 60.2
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.0e-15 88.2 127 46.5
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 2.3e-15 87.0 270 34.8
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 2.3e-15 87.0 255 33.3
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 3.0e-15 86.7 243 35.8
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 3.0e-15 86.7 252 33.7
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 3.9e-15 86.3 268 31.0
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 5.1e-15 85.9 233 33.5
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 6.6e-15 85.5 136 44.1
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 8.7e-15 85.1 96 53.1
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 1.1e-14 84.7 261 33.7
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 2.5e-14 83.6 107 51.4
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 3.3e-14 83.2 119 50.4
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 3.3e-14 83.2 260 33.5
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 5.6e-14 82.4 110 47.3
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 9.6e-14 81.6 246 33.3
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 1.3e-13 81.3 280 33.9
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.6e-13 80.9 178 38.8
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 1.6e-13 80.9 70 64.3
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.1e-13 80.5 263 31.6
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 2.8e-13 80.1 78 57.7
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 8.1e-13 78.6 78 56.4
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 8.1e-13 78.6 266 32.0
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 8.1e-13 78.6 254 33.5
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 8.1e-13 78.6 213 36.2
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 1.4e-12 77.8 265 32.1
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.8e-12 77.4 82 53.7
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 3.1e-12 76.6 275 32.4
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 3.1e-12 76.6 185 34.1
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 5.3e-12 75.9 76 55.3
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 6.9e-12 75.5 78 55.1
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 6.9e-12 75.5 195 36.9
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 6.9e-12 75.5 68 58.8
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.0e-11 73.9 71 57.7
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 3.4e-11 73.2 138 39.9
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 7.6e-11 72.0 311 29.3
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.3e-10 71.2 258 32.9
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 1.3e-10 71.2 272 30.9
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.7e-10 70.9 255 32.5
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 3.8e-10 69.7 78 52.6
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.9e-10 69.3 258 32.6
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 8.4e-10 68.6 231 31.2
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.1e-09 68.2 69 52.2
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 1.4e-09 67.8 78 51.3
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.4e-09 67.8 259 31.3
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.4e-09 65.9 258 34.1
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 5.4e-09 65.9 81 45.7
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.2e-08 64.7 78 51.3
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.7e-08 63.5 69 50.7
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 2.7e-08 63.5 267 29.2
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 3.5e-08 63.2 68 52.9
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 4.6e-08 62.8 253 30.8
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 4.6e-08 62.8 73 49.3
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 7.8e-08 62.0 82 46.3
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.3e-07 61.2 121 40.5
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 3.0e-07 60.1 69 49.3
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 2.5e-06 57.0 205 29.3
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 3.3e-06 56.6 266 29.3
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 3.3e-06 56.6 119 36.1
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 3.3e-06 56.6 217 29.0


User provided reference genes

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