Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 1.7e-73 279.3 139 100.0
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 8.6e-54 213.8 149 75.8
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 1.2e-47 193.4 151 68.9
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 9.8e-42 173.7 151 60.9
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.7e-41 172.9 146 63.0
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.1e-40 170.2 151 59.6
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.4e-40 169.9 151 60.3
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 1.9e-40 169.5 151 60.3
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 1.7e-38 162.9 146 61.6
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 2.3e-38 162.5 151 60.3
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 3.0e-38 162.2 146 60.3
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 5.0e-38 161.4 152 58.6
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 5.0e-38 161.4 148 64.2
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 5.0e-38 161.4 147 61.2
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 6.6e-38 161.0 151 57.6
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 1.5e-37 159.8 152 57.9
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 2.5e-37 159.1 147 60.5
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 3.3e-37 158.7 151 57.6
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 5.6e-37 157.9 146 60.3
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 9.5e-37 157.1 147 60.5
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 1.6e-36 156.4 146 58.9
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 1.6e-36 156.4 147 59.9
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 6.2e-36 154.5 146 58.2
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 6.2e-36 154.5 146 58.9
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 6.2e-36 154.5 147 59.2
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 8.1e-36 154.1 147 59.2
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 8.1e-36 154.1 146 56.8
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 1.1e-35 153.7 146 56.8
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 1.8e-35 152.9 146 58.2
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 1.8e-35 152.9 145 56.6
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 3.1e-35 152.1 146 56.2
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 8.9e-35 150.6 152 59.2
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 8.9e-35 150.6 146 56.8
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 8.9e-35 150.6 146 56.8
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 1.2e-34 150.2 146 59.6
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 1.2e-34 150.2 146 56.2
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 7.5e-34 147.5 152 53.3
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 2.2e-33 146.0 145 55.9
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 2.2e-33 146.0 146 56.8
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.9e-33 145.6 170 52.9
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 3.7e-33 145.2 155 52.9
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 3.7e-33 145.2 146 56.2
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 4.9e-33 144.8 170 52.9
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 8.3e-33 144.1 146 56.2
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 8.3e-33 144.1 146 52.7
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 8.3e-33 144.1 146 54.8
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 8.3e-33 144.1 147 55.1
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 8.3e-33 144.1 170 52.9
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 8.3e-33 144.1 146 54.1
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 5.4e-32 141.4 146 52.1
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 7.1e-32 141.0 149 56.4
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 7.1e-32 141.0 146 54.1
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 7.1e-32 141.0 157 49.7
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 3.5e-31 138.7 149 51.0
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 4.6e-31 138.3 144 53.5
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 7.8e-31 137.5 146 53.4
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.0e-30 137.1 151 51.7
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 1.0e-30 137.1 146 52.7
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 1.0e-30 137.1 149 51.0
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 1.7e-30 136.3 146 51.4
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 1.7e-30 136.3 146 51.4
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 1.7e-30 136.3 149 51.0
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 3.0e-30 135.6 146 51.4
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 5.1e-30 134.8 147 53.7
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 5.1e-30 134.8 152 51.3
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 8.6e-30 134.0 154 50.0
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.1e-29 133.7 151 51.0
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 1.1e-29 133.7 144 52.1
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 1.1e-29 133.7 146 51.4
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 1.9e-29 132.9 145 49.0
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 1.9e-29 132.9 144 54.2
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 2.5e-29 132.5 144 51.4
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 4.3e-29 131.7 144 51.4
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 5.6e-29 131.3 144 50.7
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 5.6e-29 131.3 147 51.7
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 9.5e-29 130.6 146 49.3
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 1.2e-28 130.2 144 52.8
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 1.2e-28 130.2 144 52.1
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 1.6e-28 129.8 144 52.1
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 2.1e-28 129.4 146 50.7
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 2.1e-28 129.4 151 49.0
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 4.7e-28 128.3 133 53.4
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 8.1e-28 127.5 133 51.9
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 8.1e-28 127.5 146 48.6
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 4.0e-27 125.2 152 45.4
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 5.2e-27 124.8 152 45.4
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 1.5e-26 123.2 139 48.2
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 3.4e-26 122.1 146 47.9
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 7.6e-26 120.9 149 45.6
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 7.6e-26 120.9 146 47.9
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 2.9e-25 119.0 146 47.3
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 2.9e-25 119.0 146 47.3
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 6.0e-23 111.3 106 54.7
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 3.0e-22 109.0 106 54.7
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 5.6e-21 104.8 131 45.8
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 1.2e-20 103.6 110 52.7
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 1.2e-20 103.6 100 61.0
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 2.1e-20 102.8 106 54.7
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 3.6e-20 102.1 84 64.3
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 6.2e-20 101.3 121 47.1
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 8.1e-20 100.9 86 65.1
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 6.8e-19 97.8 86 64.0
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 7.6e-18 94.4 134 41.0
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 2.2e-17 92.8 86 57.0
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 2.2e-17 92.8 106 49.1
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 9.3e-16 87.4 67 65.7
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 9.3e-16 87.4 136 43.4
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 3.5e-15 85.5 83 54.2
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 6.6e-14 81.3 122 41.8
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 2.1e-12 76.3 134 40.3
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 2.1e-12 76.3 134 40.3
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 2.4e-11 72.8 144 31.9
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 4.9e-09 65.1 53 62.3
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 6.4e-09 64.7 114 36.0
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 3.5e-07 58.9 50 58.0
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 3.5e-07 58.9 50 58.0
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 1.7e-06 56.6 137 33.6


User provided reference genes

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