Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1124600 Malus domestica HOM05D000267 ORTHO05D009944 0.0e+00 1099.0 542 100.0
Prupe.8G168300 Prunus persica HOM05D000267 ORTHO05D009944 2.3e-264 915.2 543 83.8
FvH4_2g15600 Fragaria vesca HOM05D000267 ORTHO05D009944 4.9e-238 827.8 551 76.6
FAN20G0365 Fragaria x ananassa HOM05D000267 ORTHO05D009944 7.8e-236 820.5 549 75.2
FAN24G1303 Fragaria x ananassa HOM05D000267 ORTHO05D009944 2.4e-224 782.3 645 65.0
CSS0022193 Camellia sinensis var. sinensis HOM05D000267 ORTHO05D009944 1.5e-218 763.1 551 69.9
FAN27G0796 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.8e-216 756.1 600 66.8
QL11p051524 Quercus lobata HOM05D000267 ORTHO05D009944 1.5e-215 753.1 544 69.1
CiPaw.05G084800 Carya illinoinensis HOM05D000267 ORTHO05D009944 4.4e-215 751.5 574 66.9
TWI79G0018 Tripterygium wilfordii HOM05D000267 ORTHO05D009944 1.4e-213 746.5 541 67.5
Thecc.02G056000 Theobroma cacao HOM05D000267 ORTHO05D009944 3.2e-213 745.3 517 71.6
FAN15G3022 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.9e-210 736.1 563 69.6
Cfa005283 Carpinus fangiana HOM05D000267 ORTHO05D002764 4.8e-209 731.5 543 68.5
TAR628G1652 Trochodendron aralioides HOM05D000267 ORTHO05D009944 6.2e-209 731.1 531 68.0
Manes.11G097600 Manihot esculenta HOM05D000267 ORTHO05D009944 8.1e-209 730.7 542 67.0
Gorai.008G037400 Gossypium raimondii HOM05D000267 ORTHO05D009944 1.1e-208 730.3 484 71.7
Rhsim11G0193400 Rhododendron simsii HOM05D000267 ORTHO05D009944 2.0e-207 726.1 589 64.2
Gohir.D12G036200 Gossypium hirsutum HOM05D000267 ORTHO05D009944 1.7e-206 723.0 484 71.1
Duzib132G0985 Durio zibethinus HOM05D000267 ORTHO05D009944 6.4e-206 721.1 518 68.1
Actinidia18043 Actinidia chinensis HOM05D000267 ORTHO05D002764 2.4e-205 719.2 542 67.0
GSVIVG01023990001 Vitis vinifera HOM05D000267 ORTHO05D009944 5.5e-205 718.0 545 66.1
EL10Ac9g21344 Beta vulgaris HOM05D000267 ORTHO05D009944 3.9e-203 711.8 522 68.2
Atru.chr5.3400 Acer truncatum HOM05D000267 ORTHO05D009944 6.7e-203 711.1 548 66.4
ClCG02G012080 Citrullus lanatus HOM05D000267 ORTHO05D009944 8.7e-203 710.7 517 66.9
COL.COLO4_17372 Corchorus olitorius HOM05D000267 ORTHO05D009944 5.6e-202 708.0 526 68.3
CsaV3_2G016240 Cucumis sativus L. HOM05D000267 ORTHO05D009944 9.6e-202 707.2 517 66.7
Potri.004G177400 Populus trichocarpa HOM05D000267 ORTHO05D009944 9.6e-202 707.2 541 64.3
THA.LOC104807804 Tarenaya hassleriana HOM05D000267 ORTHO05D009944 6.9e-200 701.0 539 63.5
Sc14g0002320 Simmondsia chinensis HOM05D000267 ORTHO05D009944 2.9e-198 695.7 519 65.7
AUR62013005 Chenopodium quinoa HOM05D000267 ORTHO05D009944 6.5e-198 694.5 537 66.1
AUR62010015 Chenopodium quinoa HOM05D000267 ORTHO05D009944 1.0e-195 687.2 493 68.8
Migut.B00061 Erythranthe guttata HOM05D000267 ORTHO05D009944 1.1e-192 677.2 546 60.4
vmacro02289 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 9.0e-192 674.1 453 72.2
Dinv41920 Davidia involucrata HOM05D000267 ORTHO05D002764 1.2e-191 673.7 478 69.9
Eucgr.I01454 Eucalyptus grandis HOM05D000267 ORTHO05D009944 3.8e-190 668.7 541 62.8
CANSAT25G1222 Cannabis sativa HOM05D000267 ORTHO05D009944 5.5e-189 664.8 484 67.8
MBI05_g00165_MAGBIO Magnolia biondii HOM05D000267 ORTHO05D009944 7.2e-189 664.5 498 65.7
Cpa.g.sc20.108 Carica papaya HOM05D000267 ORTHO05D009944 1.8e-187 659.8 545 61.8
Cc09_g10270 Coffea canephora HOM05D000267 ORTHO05D009944 2.5e-186 656.0 564 61.5
Sed0004064 Sechium edule HOM05D000267 ORTHO05D009944 3.1e-184 649.0 526 62.2
AUR62015150 Chenopodium quinoa HOM05D000267 ORTHO05D009944 2.2e-182 642.9 493 65.9
ATR0661G537 Amborella trichopoda HOM05D000267 ORTHO05D009944 5.0e-182 641.7 491 63.3
Nitab4.5_0000079g0250 Nicotiana tabacum HOM05D000267 ORTHO05D000298 2.5e-181 639.4 498 64.1
Hma1.2p1_0163F.1_g072670 Hydrangea macrophylla HOM05D000267 ORTHO05D009944 1.0e-179 634.0 430 71.6
Haze_02110 Corylus avellana HOM05D000267 ORTHO05D009944 3.7e-177 625.5 545 61.8
MELO3C020832.2 Cucumis melo HOM05D000267 ORTHO05D009944 6.3e-177 624.8 536 60.6
AagrBONN_evm.TU.Sc2ySwM_344.2069 Anthoceros agrestis HOM05D000267 ORTHO05D009944 1.4e-176 623.6 500 59.0
Ciclev10028457m.g Citrus clementina HOM05D000267 ORTHO05D009944 1.1e-173 614.0 433 70.4
Pp3c3_37260 Physcomitrium patens HOM05D000267 ORTHO05D009944 8.8e-171 604.4 527 54.8
Nitab4.5_0007484g0010 Nicotiana tabacum HOM05D000267 ORTHO05D009944 1.5e-170 603.6 540 58.5
SMO367G0708 Selaginella moellendorffii HOM05D000267 ORTHO05D009944 2.0e-170 603.2 519 56.8
Gohir.A12G036400 Gossypium hirsutum HOM05D000267 ORTHO05D009944 2.6e-170 602.8 409 69.9
Os04g0560500 Oryza sativa ssp. japonica HOM05D000267 ORTHO05D009944 7.0e-168 594.7 555 53.9
Mapoly0001s0154 Marchantia polymorpha HOM05D000267 ORTHO05D009944 2.0e-167 593.2 535 55.3
SalBow1G0833 Salvia bowleyana HOM05D000267 ORTHO05D009944 4.1e-160 568.9 552 55.1
Nn5g30837 Nelumbo nucifera HOM05D000267 ORTHO05D009944 7.2e-157 558.1 429 63.6
Zm00001eb074100 Zea mays HOM05D000267 ORTHO05D009944 2.1e-148 530.0 510 52.5
Oeu015554.3 Olea europaea HOM05D000267 ORTHO05D002764 2.7e-148 529.6 519 54.3
RcHm_v2.0_Chr6g0278781 Rosa chinensis HOM05D000267 ORTHO05D009944 1.0e-134 484.6 328 75.6
Atru.chr5.3388 Acer truncatum HOM05D000267 ORTHO05D009944 4.6e-127 459.1 430 57.0
Ah.01g023200 Amaranthus hybridus HOM05D000267 ORTHO05D009944 2.1e-124 450.3 449 52.8
Pp3c21_13310 Physcomitrium patens HOM05D000267 ORTHO05D009944 2.1e-108 397.1 516 41.5
RcHm_v2.0_Chr6g0255801 Rosa chinensis HOM05D000267 ORTHO05D009944 6.2e-100 369.0 282 69.1
Cre13.g587500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 8.7e-94 348.6 553 38.0
HPP92_001748 Vanilla planifolia HOM05D000267 ORTHO05D009944 2.2e-89 334.0 306 55.6
RcHm_v2.0_Chr6g0278801 Rosa chinensis HOM05D000267 ORTHO05D009944 3.0e-86 323.6 189 82.5
Atru.chr5.3392 Acer truncatum HOM05D000267 ORTHO05D009944 1.1e-85 321.6 301 56.5
Hund06449 Selenicereus undatus HOM05D000267 ORTHO05D009944 1.1e-83 315.1 212 71.2
Cre17.g719500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 1.8e-83 314.3 561 38.0
Actinidia20524 Actinidia chinensis HOM05D000267 ORTHO05D002764 5.5e-80 302.8 550 38.7
Peaxi162Scf00078g01332 Petunia axillaris HOM05D000267 ORTHO05D009944 3.1e-75 287.0 230 62.6
MCO05G576 Micromonas commoda HOM05D000267 ORTHO05D009944 2.9e-65 253.8 491 34.8
AagrBONN_evm.TU.Sc2ySwM_228.1198 Anthoceros agrestis HOM05D000267 ORTHO05D009944 5.5e-64 249.6 361 39.1
MCO05G735 Micromonas commoda HOM05D000267 ORTHO05D009944 4.8e-60 236.5 583 32.4
PRCOL_00001600 Prasinoderma coloniale HOM05D000267 ORTHO05D009944 1.7e-52 211.5 540 32.0
Peaxi162Scf00078g01331 Petunia axillaris HOM05D000267 ORTHO05D009944 3.6e-47 193.7 127 74.8
Sabra04G0119300 Salix brachista HOM05D000267 ORTHO05D009944 1.3e-41 175.3 188 48.9
SEGI_17018 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 2.2e-41 174.5 199 44.2
SEGI_10216 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 3.6e-39 167.2 244 34.8
RcHm_v2.0_Chr6g0255791 Rosa chinensis HOM05D000267 ORTHO05D009944 5.2e-30 136.7 92 70.7
Lj9A400T56 Lonicera japonica HOM05D000267 ORTHO05D009944 2.4e-27 127.9 74 82.4
HPP92_001749 Vanilla planifolia HOM05D000267 ORTHO05D009944 2.4e-27 127.9 85 70.6
CARHR111810 Cardamine hirsuta HOM05D000267 ORTHO05D009944 4.7e-23 113.6 90 57.8
MCO15G399 Micromonas commoda HOM05D002360 ORTHO05D006971 5.9e-18 96.7 490 21.2
RcHm_v2.0_Chr2g0123001 Rosa chinensis HOM05D000267 ORTHO05D009944 7.8e-18 96.3 69 68.1
Thecc.02G059600 Theobroma cacao HOM05D000267 ORTHO05D009944 7.8e-18 96.3 76 63.2
SEGI_00421 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 6.6e-17 93.2 179 30.2
Cre12.g509650 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006971 1.9e-16 91.7 475 21.1
unitig_747.g21723 Utricularia gibba HOM05D002360 ORTHO05D006971 1.9e-16 91.7 444 21.4
Lalb_Chr23g0278241 Lupinus albus HOM05D002360 ORTHO05D006971 1.4e-14 85.5 445 20.7
MD04G1023800 Malus domestica HOM05D002360 ORTHO05D006971 1.8e-14 85.1 446 21.1
Carub.0007s2818 Capsella rubella HOM05D002360 ORTHO05D006971 6.8e-14 83.2 442 20.8
SMO141G0153 Selaginella moellendorffii HOM05D002360 ORTHO05D006971 6.8e-14 83.2 392 21.7
arahy.Tifrunner.gnm1.ann1.M5MKEZ Arachis hypogaea HOM05D002360 ORTHO05D006971 8.9e-14 82.8 445 20.9
MCO04G494 Micromonas commoda HOM05D002360 ORTHO05D006971 1.2e-13 82.4 497 22.1
PGR083G1913 Punica granatum HOM05D002360 ORTHO05D006971 1.2e-13 82.4 445 20.9
Eucgr.H02625 Eucalyptus grandis HOM05D002360 ORTHO05D006971 1.5e-13 82.0 437 21.1
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 1.5e-13 82.0 446 20.2
PRCOL_00001058 Prasinoderma coloniale HOM05D002360 ORTHO05D006971 1.5e-13 82.0 469 22.6
Thecc.04G190000 Theobroma cacao HOM05D002360 ORTHO05D006971 1.5e-13 82.0 444 20.3
AagrBONN_evm.TU.Sc2ySwM_368.2776 Anthoceros agrestis HOM05D002360 ORTHO05D006971 2.0e-13 81.6 446 20.4
arahy.Tifrunner.gnm1.ann1.TUF7J0 Arachis hypogaea HOM05D002360 ORTHO05D006971 2.0e-13 81.6 445 20.7
Prupe.1G174100 Prunus persica HOM05D002360 ORTHO05D006971 2.0e-13 81.6 445 20.4
VMungo1383G0373 Vigna mungo HOM05D002182 ORTHO05D008382 2.0e-13 81.6 442 20.4
CANSAT78G1063 Cannabis sativa HOM05D002360 ORTHO05D006971 3.4e-13 80.9 445 20.4
Ca_16437_v3 Cicer arietinum L. HOM05D002360 ORTHO05D006971 4.4e-13 80.5 447 21.5
AT4G14210 Arabidopsis thaliana HOM05D002360 ORTHO05D006971 5.8e-13 80.1 442 20.1
COL.COLO4_35973 Corchorus olitorius HOM05D002360 ORTHO05D006971 7.5e-13 79.7 408 21.1
AL7G42150 Arabidopsis lyrata HOM05D002360 ORTHO05D006971 9.8e-13 79.3 442 20.1
Haze_11694 Corylus avellana HOM05D002360 ORTHO05D006971 9.8e-13 79.3 446 20.4
TPR.G18101 Trifolium pratense HOM05D002360 ORTHO05D006971 9.8e-13 79.3 446 20.2
FAN12G1508 Fragaria x ananassa HOM05D002360 ORTHO05D006971 1.3e-12 79.0 446 20.6
Lj6g0010237 Lotus japonicus HOM05D002360 ORTHO05D006971 1.3e-12 79.0 442 19.9
Phvul.001G264200 Phaseolus vulgaris HOM05D002360 ORTHO05D006971 1.7e-12 78.6 443 20.1
CSS0045415 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006971 2.2e-12 78.2 468 19.7
FAN22G0477 Fragaria x ananassa HOM05D002360 ORTHO05D006971 2.2e-12 78.2 446 20.6
Rhsim12G0213700 Rhododendron simsii HOM05D002360 ORTHO05D006971 2.2e-12 78.2 442 19.9
Sabra02G0179300 Salix brachista HOM05D002360 ORTHO05D006971 2.9e-12 77.8 443 20.1
FAN07G1347 Fragaria x ananassa HOM05D002360 ORTHO05D006971 3.7e-12 77.4 446 20.6
THA.LOC104822231 Tarenaya hassleriana HOM05D002360 ORTHO05D006971 3.7e-12 77.4 442 19.9
CSS0024321 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006971 4.9e-12 77.0 468 19.7
TWI63G1808 Tripterygium wilfordii HOM05D002360 ORTHO05D006971 4.9e-12 77.0 446 20.4
Duzib151G1143 Durio zibethinus HOM05D002360 ORTHO05D006971 6.4e-12 76.6 446 19.5
ECA232G4402 Erigeron canadensis HOM05D002360 ORTHO05D006971 6.4e-12 76.6 442 20.1
CARHR220290 Cardamine hirsuta HOM05D002360 ORTHO05D006971 8.3e-12 76.3 442 19.5
Manes.05G193700 Manihot esculenta HOM05D002360 ORTHO05D006971 1.1e-11 75.9 443 19.9
C04p41610 Brassica napus HOM05D002360 ORTHO05D006971 1.4e-11 75.5 442 19.9
BcaC02g09347 Brassica carinata HOM05D002360 ORTHO05D006971 1.9e-11 75.1 442 19.9
BolC4t25740H Brassica oleracea HOM05D002360 ORTHO05D006971 1.9e-11 75.1 442 19.9
Thhalv10024795m.g Eutrema salsugineum HOM05D002360 ORTHO05D006971 1.9e-11 75.1 442 19.9
MELO3C017772.2 Cucumis melo HOM05D002360 ORTHO05D006971 3.2e-11 74.3 439 20.5
CsaV3_4G002690 Cucumis sativus L. HOM05D002360 ORTHO05D006971 3.2e-11 74.3 439 20.5
SEGI_37732 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 9.2e-11 72.8 94 40.4
BcaC01g00209 Brassica carinata HOM05D002360 ORTHO05D006971 1.2e-10 72.4 445 19.3
BcaNung05576 Brassica carinata HOM05D002360 ORTHO05D006971 1.2e-10 72.4 442 19.5
A04p07910 Brassica napus HOM05D002360 ORTHO05D006971 1.6e-10 72.0 442 19.7
BraA04t16480Z Brassica rapa HOM05D002360 ORTHO05D006971 2.0e-10 71.6 442 19.5
BcaB02g08628 Brassica carinata HOM05D002360 ORTHO05D006971 2.7e-10 71.2 442 19.5
CDE07G0903 Ceratophyllum demersum HOM05D002360 ORTHO05D006971 7.8e-10 69.7 410 21.0
Sp7g12070 Schrenkiella parvula HOM05D002360 ORTHO05D006971 1.0e-09 69.3 442 19.0
A08p24280 Brassica napus HOM05D002360 ORTHO05D006971 1.3e-09 68.9 442 19.0
Lsat_1_v5_gn_4_89381 Lactuca sativa HOM05D002360 ORTHO05D006971 1.3e-09 68.9 437 19.5
C03p76930 Brassica napus HOM05D002360 ORTHO05D006971 1.7e-09 68.6 442 19.0
BolC3t19948H Brassica oleracea HOM05D002360 ORTHO05D006971 1.7e-09 68.6 451 19.3
vmacro02288 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 6.6e-09 66.6 74 50.0
Cre07.g314150 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006297 1.1e-08 65.9 466 21.2
BraA08t34383Z Brassica rapa HOM05D002360 ORTHO05D006971 1.5e-08 65.5 438 19.4
Medtr3g084830 Medicago truncatula HOM05D002360 ORTHO05D006971 1.1e-06 59.3 288 21.2
Cfa008674 Carpinus fangiana HOM05D002360 ORTHO05D006971 5.2e-06 57.0 293 22.2


User provided reference genes

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