Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1123500 Malus domestica HOM05D000686 ORTHO05D000512 5.1e-38 160.6 82 100.0
Prupe.8G167400 Prunus persica HOM05D000686 ORTHO05D000512 1.4e-16 89.4 63 71.4
RcHm_v2.0_Chr6g0278521 Rosa chinensis HOM05D000686 ORTHO05D000512 9.3e-16 86.7 58 69.0
FAN24G0082 Fragaria x ananassa HOM05D000686 ORTHO05D000512 1.3e-14 82.8 58 65.5
CSS0044493 Camellia sinensis var. sinensis HOM05D000686 ORTHO05D000512 4.3e-13 77.8 64 62.5
RcHm_v2.0_Chr6g0278611 Rosa chinensis HOM05D000686 ORTHO05D000512 7.4e-13 77.0 58 65.5
MD05G1123600 Malus domestica HOM05D000686 ORTHO05D000512 9.6e-13 76.6 63 63.5
RcHm_v2.0_Chr6g0278701 Rosa chinensis HOM05D000686 ORTHO05D000512 1.3e-12 76.3 58 65.5
Prupe.8G167700 Prunus persica HOM05D000686 ORTHO05D000512 1.6e-12 75.9 64 60.9
Prupe.I003800 Prunus persica HOM05D000686 ORTHO05D000512 1.6e-12 75.9 64 60.9
FAN20G3080 Fragaria x ananassa HOM05D000686 ORTHO05D002248 2.8e-12 75.1 59 62.7
MD05G1123700 Malus domestica HOM05D000686 ORTHO05D000512 2.8e-12 75.1 63 61.9
RcHm_v2.0_Chr6g0278671 Rosa chinensis HOM05D000686 ORTHO05D000512 3.7e-12 74.7 58 63.8
FAN20G3179 Fragaria x ananassa HOM05D000686 ORTHO05D000512 4.8e-12 74.3 59 61.0
FAN24G1581 Fragaria x ananassa HOM05D000686 ORTHO05D000512 4.8e-12 74.3 62 59.7
FAN27G2262 Fragaria x ananassa HOM05D000686 ORTHO05D002248 4.8e-12 74.3 62 59.7
Prupe.I004000 Prunus persica HOM05D000686 ORTHO05D000512 1.1e-11 73.2 64 59.4
Actinidia39160 Actinidia chinensis HOM05D000686 ORTHO05D000512 1.4e-11 72.8 64 57.8
CSS0022426 Camellia sinensis var. sinensis HOM05D000686 ORTHO05D000512 1.4e-11 72.8 64 59.4
CANSAT25G0866 Cannabis sativa HOM05D000686 ORTHO05D000512 1.4e-11 72.8 59 57.6
CANSAT25G0982 Cannabis sativa HOM05D000686 ORTHO05D000512 1.4e-11 72.8 59 62.7
CANSAT25G3648 Cannabis sativa HOM05D000686 ORTHO05D000512 1.4e-11 72.8 59 57.6
Cfa005273 Carpinus fangiana HOM05D000686 ORTHO05D000512 1.4e-11 72.8 64 56.2
Haze_02122 Corylus avellana HOM05D000686 ORTHO05D000512 1.4e-11 72.8 64 59.4
DCAR_003180 Daucus carota HOM05D000686 ORTHO05D000512 1.8e-11 72.4 62 54.8
Potri.004G176950 Populus trichocarpa HOM05D000686 ORTHO05D000512 1.8e-11 72.4 59 64.4
QL11p051221 Quercus lobata HOM05D000686 ORTHO05D000512 3.1e-11 71.6 64 57.8
arahy.Tifrunner.gnm1.ann1.U80PFY Arachis hypogaea HOM05D000686 ORTHO05D000512 4.0e-11 71.2 57 61.4
QL11p051205 Quercus lobata HOM05D000686 ORTHO05D000512 4.0e-11 71.2 64 57.8
Ca_13012_v3 Cicer arietinum L. HOM05D000686 ORTHO05D000512 5.3e-11 70.9 58 60.3
Haze_02121 Corylus avellana HOM05D000686 ORTHO05D000512 5.3e-11 70.9 64 56.2
RcHm_v2.0_Chr6g0278571 Rosa chinensis HOM05D000686 ORTHO05D000512 5.3e-11 70.9 66 54.5
Cfa005271 Carpinus fangiana HOM05D000686 ORTHO05D000512 6.9e-11 70.5 63 55.6
BcaNung01979 Brassica carinata HOM05D000686 ORTHO05D000512 9.0e-11 70.1 62 58.1
A06p49000 Brassica napus HOM05D000686 ORTHO05D000512 9.0e-11 70.1 62 58.1
C07p63690 Brassica napus HOM05D000686 ORTHO05D000512 9.0e-11 70.1 62 58.1
BolC7t46782H Brassica oleracea HOM05D000686 ORTHO05D000512 9.0e-11 70.1 62 58.1
BraA06t27766Z Brassica rapa HOM05D000686 ORTHO05D000512 9.0e-11 70.1 62 58.1
FAN24G0033 Fragaria x ananassa HOM05D000686 ORTHO05D000512 1.2e-10 69.7 59 59.3
Cfa005262 Carpinus fangiana HOM05D000686 ORTHO05D000512 1.5e-10 69.3 64 57.8
Actinidia21471 Actinidia chinensis HOM05D000686 ORTHO05D000512 2.0e-10 68.9 64 54.7
Actinidia39162 Actinidia chinensis HOM05D000686 ORTHO05D000512 2.0e-10 68.9 64 54.7
Thhalv10025344m.g Eutrema salsugineum HOM05D000686 ORTHO05D000512 2.0e-10 68.9 62 56.5
Potri.004G176750 Populus trichocarpa HOM05D000686 ORTHO05D000512 2.0e-10 68.9 59 61.0
Sabra04G0118700 Salix brachista HOM05D000686 ORTHO05D000512 2.0e-10 68.9 59 61.0
Sabra04G0118800 Salix brachista HOM05D000686 ORTHO05D000512 2.0e-10 68.9 59 61.0
Duzib132G1076 Durio zibethinus HOM05D000686 ORTHO05D000512 2.6e-10 68.6 64 54.7
QL11p051061 Quercus lobata HOM05D000686 ORTHO05D000512 2.6e-10 68.6 59 62.7
QL11p051090 Quercus lobata HOM05D000686 ORTHO05D000512 3.4e-10 68.2 59 57.6
Sc08g0002820 Simmondsia chinensis HOM05D000686 ORTHO05D000512 3.4e-10 68.2 62 53.2
vmacro17317 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 3.4e-10 68.2 65 53.8
Gohir.D04G168200 Gossypium hirsutum HOM05D000686 ORTHO05D000512 4.5e-10 67.8 59 55.9
Gorai.012G156500 Gossypium raimondii HOM05D000686 ORTHO05D000512 4.5e-10 67.8 59 55.9
Ciclev10028550m.g Citrus clementina HOM05D000686 ORTHO05D000512 5.8e-10 67.4 62 58.1
TAR381G0846 Trochodendron aralioides HOM05D000686 ORTHO05D000512 5.8e-10 67.4 58 56.9
arahy.Tifrunner.gnm1.ann1.MS9EFZ Arachis hypogaea HOM05D000686 ORTHO05D000512 7.6e-10 67.0 59 57.6
CiPaw.05G084100 Carya illinoinensis HOM05D000686 ORTHO05D000512 7.6e-10 67.0 62 51.6
QL11p051135 Quercus lobata HOM05D000686 ORTHO05D000512 7.6e-10 67.0 59 59.3
Duzib132G0825 Durio zibethinus HOM05D000686 ORTHO05D000512 1.0e-09 66.6 62 54.8
Gohir.A04G131600 Gossypium hirsutum HOM05D000686 ORTHO05D000512 1.0e-09 66.6 59 54.2
AL7G10430 Arabidopsis lyrata HOM05D000686 ORTHO05D000512 1.3e-09 66.2 62 53.2
EL10Ac9g21353 Beta vulgaris HOM05D000686 ORTHO05D000512 1.3e-09 66.2 62 54.8
Gohir.A01G169800 Gossypium hirsutum HOM05D000686 ORTHO05D000512 1.3e-09 66.2 62 51.6
Lj9A395T27 Lonicera japonica HOM05D000686 ORTHO05D000512 1.3e-09 66.2 64 50.0
TAR381G0893 Trochodendron aralioides HOM05D000686 ORTHO05D000512 1.3e-09 66.2 58 55.2
AL7G10420 Arabidopsis lyrata HOM05D000686 ORTHO05D000512 1.7e-09 65.9 61 54.1
AT4G38540 Arabidopsis thaliana HOM05D000686 ORTHO05D000512 1.7e-09 65.9 62 51.6
Carub.0002s1479 Capsella rubella HOM05D000686 ORTHO05D000512 1.7e-09 65.9 61 54.1
AUR62010022 Chenopodium quinoa HOM05D000686 ORTHO05D000512 1.7e-09 65.9 57 54.4
COL.COLO4_17362 Corchorus olitorius HOM05D000686 ORTHO05D000512 1.7e-09 65.9 59 52.5
Gohir.D01G160900 Gossypium hirsutum HOM05D000686 ORTHO05D000512 1.7e-09 65.9 62 53.2
Gorai.002G199300 Gossypium raimondii HOM05D000686 ORTHO05D000512 1.7e-09 65.9 62 53.2
Gorai.002G199400 Gossypium raimondii HOM05D000686 ORTHO05D000512 1.7e-09 65.9 62 53.2
Sp7g37230 Schrenkiella parvula HOM05D000686 ORTHO05D000512 1.7e-09 65.9 62 53.2
CARHR294270 Cardamine hirsuta HOM05D000686 ORTHO05D000512 2.2e-09 65.5 61 52.5
Manes.11G097252 Manihot esculenta HOM05D000686 ORTHO05D000512 2.2e-09 65.5 61 54.1
Aa31LG6G16630 Aethionema arabicum HOM05D000686 ORTHO05D000512 2.9e-09 65.1 62 53.2
CiPaw.05G084200 Carya illinoinensis HOM05D000686 ORTHO05D000512 2.9e-09 65.1 64 48.4
AUR62013012 Chenopodium quinoa HOM05D000686 ORTHO05D000512 2.9e-09 65.1 57 54.4
COL.COLO4_26734 Corchorus olitorius HOM05D000686 ORTHO05D000512 2.9e-09 65.1 65 49.2
Gohir.D04G168100 Gossypium hirsutum HOM05D000686 ORTHO05D000512 2.9e-09 65.1 59 54.2
MBI08_g27805_MAGBIO Magnolia biondii HOM05D000686 ORTHO05D000512 2.9e-09 65.1 61 54.1
COL.COLO4_17364 Corchorus olitorius HOM05D000686 ORTHO05D000512 3.8e-09 64.7 59 52.5
RcHm_v2.0_Chr6g0278591 Rosa chinensis HOM05D000686 ORTHO05D000512 3.8e-09 64.7 60 58.3
vmacro17318 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 3.8e-09 64.7 63 49.2
Carub.0003s2487 Capsella rubella HOM05D000686 ORTHO05D000512 5.0e-09 64.3 58 55.2
Carub.0007s0043 Capsella rubella HOM05D000686 ORTHO05D000512 5.0e-09 64.3 62 51.6
GSVIVG01024000001 Vitis vinifera HOM05D000686 ORTHO05D000512 5.0e-09 64.3 58 51.7
MSTRG.22913 Avicennia marina HOM05D000686 ORTHO05D000512 6.5e-09 63.9 63 54.0
MBI08_g30370_MAGBIO Magnolia biondii HOM05D000686 ORTHO05D000512 6.5e-09 63.9 61 52.5
PSO675G8673 Papaver somniferum HOM05D000686 ORTHO05D000512 6.5e-09 63.9 58 55.2
Thecc.02G057600 Theobroma cacao HOM05D000686 ORTHO05D000512 6.5e-09 63.9 58 55.2
Cfa005264 Carpinus fangiana HOM05D000686 ORTHO05D000512 8.4e-09 63.5 67 49.3
Gorai.012G156400 Gossypium raimondii HOM05D000686 ORTHO05D000512 8.4e-09 63.5 63 50.8
Cfa005265 Carpinus fangiana HOM05D000686 ORTHO05D000512 1.1e-08 63.2 64 50.0
CiPaw.05G084000 Carya illinoinensis HOM05D000686 ORTHO05D000512 1.1e-08 63.2 62 46.8
Gohir.A04G131500 Gossypium hirsutum HOM05D000686 ORTHO05D000512 1.1e-08 63.2 59 54.2
QL11p051163 Quercus lobata HOM05D000686 ORTHO05D000512 1.1e-08 63.2 64 50.0
Ah.01g008220 Amaranthus hybridus HOM05D000686 ORTHO05D000512 1.4e-08 62.8 60 50.0
THA.LOC104804090 Tarenaya hassleriana HOM05D000686 ORTHO05D000512 1.4e-08 62.8 62 50.0
Aqoxy1G02089 Aquilegia oxysepala HOM05D000686 ORTHO05D000512 1.9e-08 62.4 57 50.9
Eucgr.I01441 Eucalyptus grandis HOM05D000686 ORTHO05D000512 1.9e-08 62.4 59 50.8
Medtr1g112740 Medicago truncatula HOM05D000686 ORTHO05D000512 1.9e-08 62.4 57 54.4
Nitab4.5_0000498g0040 Nicotiana tabacum HOM05D000686 ORTHO05D000512 1.9e-08 62.4 63 50.8
Rhsim05G0053700 Rhododendron simsii HOM05D000686 ORTHO05D000512 1.9e-08 62.4 64 46.9
TPR.G2438 Trifolium pratense HOM05D000686 ORTHO05D000512 1.9e-08 62.4 56 57.1
AT5G05320 Arabidopsis thaliana HOM05D000686 ORTHO05D000512 2.5e-08 62.0 58 53.4
Cfa004819 Carpinus fangiana HOM05D000686 ORTHO05D000512 2.5e-08 62.0 64 48.4
Eucgr.I01448 Eucalyptus grandis HOM05D000686 ORTHO05D000512 2.5e-08 62.0 59 54.2
Manes.11G097202 Manihot esculenta HOM05D000686 ORTHO05D000512 2.5e-08 62.0 62 50.0
Eucgr.I01437 Eucalyptus grandis HOM05D000686 ORTHO05D000512 3.2e-08 61.6 59 50.8
Eucgr.I01443 Eucalyptus grandis HOM05D000686 ORTHO05D000512 3.2e-08 61.6 59 49.2
MSTRG.22352 Avicennia marina HOM05D000686 ORTHO05D000512 4.2e-08 61.2 57 56.1
MELO3C013343.2 Cucumis melo HOM05D000686 ORTHO05D000512 4.2e-08 61.2 61 50.8
Eucgr.I01449 Eucalyptus grandis HOM05D000686 ORTHO05D000512 4.2e-08 61.2 59 54.2
Lalb_Chr02g0143461 Lupinus albus HOM05D000686 ORTHO05D000512 4.2e-08 61.2 58 48.3
SGA_v2.0_scaffold207G41934 Striga asiatica HOM05D000686 ORTHO05D000512 4.2e-08 61.2 63 46.0
Medtr1g090667 Medicago truncatula HOM05D000686 ORTHO05D000512 5.5e-08 60.8 58 55.2
Hund29794 Selenicereus undatus HOM05D000686 ORTHO05D000512 5.5e-08 60.8 61 54.1
Hund29797 Selenicereus undatus HOM05D000686 ORTHO05D000512 5.5e-08 60.8 61 54.1
Sc06g0007000 Simmondsia chinensis HOM05D000686 ORTHO05D000512 5.5e-08 60.8 62 46.8
Solyc12g089385.1 Solanum lycopersicum HOM05D000686 ORTHO05D000512 5.5e-08 60.8 63 49.2
Sopen12g031240 Solanum pennellii HOM05D000686 ORTHO05D000512 5.5e-08 60.8 63 49.2
Lj5g0020128 Lotus japonicus HOM05D000686 ORTHO05D000512 7.1e-08 60.5 60 50.0
TWI75G0719 Tripterygium wilfordii HOM05D000686 ORTHO05D000512 7.1e-08 60.5 58 53.4
TWI75G0842 Tripterygium wilfordii HOM05D000686 ORTHO05D000512 7.1e-08 60.5 58 53.4
Nitab4.5_0000192g0200 Nicotiana tabacum HOM05D000686 ORTHO05D000512 9.3e-08 60.1 63 49.2
Aqoxy1G02090 Aquilegia oxysepala HOM05D000686 ORTHO05D000512 1.2e-07 59.7 62 46.8
CAN.G1517.2 Capsicum annuum HOM05D000686 ORTHO05D000512 1.2e-07 59.7 59 52.5
Eucgr.I01444 Eucalyptus grandis HOM05D000686 ORTHO05D000512 1.2e-07 59.7 59 49.2
Gorai.012G156200 Gossypium raimondii HOM05D000686 ORTHO05D000512 1.2e-07 59.7 65 49.2
Sed0022161 Sechium edule HOM05D000686 ORTHO05D000512 1.2e-07 59.7 61 52.5
CSS0009382 Camellia sinensis var. sinensis HOM05D000686 ORTHO05D000512 1.6e-07 59.3 63 50.8
CSS0016077 Camellia sinensis var. sinensis HOM05D000686 ORTHO05D000512 1.6e-07 59.3 63 50.8
Cfa005263 Carpinus fangiana HOM05D000686 ORTHO05D000512 1.6e-07 59.3 64 48.4
Haze_02120 Corylus avellana HOM05D000686 ORTHO05D000512 1.6e-07 59.3 47 63.8
Carub.0003s2485 Capsella rubella HOM05D000686 ORTHO05D000512 2.1e-07 58.9 64 45.3
Gohir.D04G167900 Gossypium hirsutum HOM05D000686 ORTHO05D000512 2.1e-07 58.9 58 51.7
Lj5g0026225 Lotus japonicus HOM05D000686 ORTHO05D000512 2.1e-07 58.9 60 51.7
Medtr1g112780 Medicago truncatula HOM05D000686 ORTHO05D000512 2.1e-07 58.9 58 51.7
PGSC0003DMG400029330 Solanum tuberosum HOM05D000686 ORTHO05D000512 2.1e-07 58.9 63 47.6
ClCG02G003970 Citrullus lanatus HOM05D000686 ORTHO05D000512 2.7e-07 58.5 61 50.8
Nn7g38380 Nelumbo nucifera HOM05D000686 ORTHO05D000512 2.7e-07 58.5 57 49.1
Phvul.007G018600 Phaseolus vulgaris HOM05D000686 ORTHO05D000512 2.7e-07 58.5 60 46.7
Actinidia15455 Actinidia chinensis HOM05D000686 ORTHO05D000512 3.5e-07 58.2 58 51.7
Eucgr.I01445 Eucalyptus grandis HOM05D000686 ORTHO05D000512 3.5e-07 58.2 59 49.2
HanXRQChr13g0386971 Helianthus annuus HOM05D000686 ORTHO05D000512 3.5e-07 58.2 62 46.8
Lj5g0008575 Lotus japonicus HOM05D000686 ORTHO05D000512 3.5e-07 58.2 60 48.3
Nitab4.5_0000498g0010 Nicotiana tabacum HOM05D000686 ORTHO05D000512 3.5e-07 58.2 63 47.6
VMungo0720G0302 Vigna mungo HOM05D000686 ORTHO05D000512 3.5e-07 58.2 57 49.1
Nitab4.5_0011740g0010 Nicotiana tabacum HOM05D000686 ORTHO05D000512 4.6e-07 57.8 63 47.6
Psat0s2220g0040 Pisum sativum HOM05D000686 ORTHO05D000512 4.6e-07 57.8 57 47.4
Gohir.A01G169900 Gossypium hirsutum HOM05D000686 ORTHO05D000512 6.1e-07 57.4 59 47.5
Ah.01g023140 Amaranthus hybridus HOM05D000686 ORTHO05D000512 7.9e-07 57.0 62 45.2
Migut.B00068 Erythranthe guttata HOM05D000686 ORTHO05D000512 7.9e-07 57.0 59 47.5
Medtr1g112750 Medicago truncatula HOM05D000686 ORTHO05D000512 7.9e-07 57.0 58 50.0
PSO541G4924 Papaver somniferum HOM05D000686 ORTHO05D000512 7.9e-07 57.0 58 50.0
vmacro21858 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 7.9e-07 57.0 58 50.0
CiPaw.05G083800 Carya illinoinensis HOM05D000686 ORTHO05D000512 1.0e-06 56.6 64 46.9
PGR142G3398 Punica granatum HOM05D000686 ORTHO05D000512 1.0e-06 56.6 59 47.5
SalBow5G4688 Salvia bowleyana HOM05D000686 ORTHO05D000512 1.0e-06 56.6 57 54.4
Haze_02118 Corylus avellana HOM05D000686 ORTHO05D000512 1.3e-06 56.2 38 60.5
Rhsim05G0053600 Rhododendron simsii HOM05D000686 ORTHO05D000512 1.3e-06 56.2 63 47.6
SalBow5G1274 Salvia bowleyana HOM05D000686 ORTHO05D000512 1.3e-06 56.2 62 48.4
SalBow5G3389 Salvia bowleyana HOM05D000686 ORTHO05D000512 1.3e-06 56.2 62 48.4
ATR1136G109 Amborella trichopoda HOM05D000686 ORTHO05D000512 1.8e-06 55.8 65 43.1
Psat6g232200 Pisum sativum HOM05D000686 ORTHO05D000512 1.8e-06 55.8 57 50.9
QL11p051072 Quercus lobata HOM05D000686 ORTHO05D000512 1.8e-06 55.8 64 48.4
Cc01_g06760 Coffea canephora HOM05D000686 ORTHO05D000512 2.3e-06 55.5 58 50.0
Nitab4.5_0001936g0040 Nicotiana tabacum HOM05D000686 ORTHO05D000512 2.3e-06 55.5 63 42.9
CsaV3_7G001140 Cucumis sativus L. HOM05D000686 ORTHO05D000512 3.0e-06 55.1 59 50.8
Peaxi162Scf00064g00740 Petunia axillaris HOM05D000686 ORTHO05D000512 3.0e-06 55.1 63 46.0
QL11p051078 Quercus lobata HOM05D000686 ORTHO05D000512 3.0e-06 55.1 64 48.4
Rhsim06G0013700 Rhododendron simsii HOM05D000686 ORTHO05D000512 3.0e-06 55.1 58 50.0
Rhsim06G0014200 Rhododendron simsii HOM05D000686 ORTHO05D000512 3.0e-06 55.1 58 48.3
Rhsim06G0014700 Rhododendron simsii HOM05D000059 ORTHO05D037376 3.0e-06 55.1 58 50.0
CiPaw.05G083900 Carya illinoinensis HOM05D000686 ORTHO05D000512 3.9e-06 54.7 58 46.6
Gohir.D01G161000 Gossypium hirsutum HOM05D000686 ORTHO05D000512 3.9e-06 54.7 59 44.1
Actinidia17012 Actinidia chinensis HOM05D000686 ORTHO05D000512 5.1e-06 54.3 58 50.0
Glyma.10G282100 Glycine max HOM05D000686 ORTHO05D000512 5.1e-06 54.3 57 49.1
Os03g0155000 Oryza sativa ssp. japonica HOM05D000686 ORTHO05D000512 5.1e-06 54.3 59 45.8
HanXRQChr13g0386951 Helianthus annuus HOM05D000686 ORTHO05D000512 6.7e-06 53.9 62 45.2
Os03g0154100 Oryza sativa ssp. japonica HOM05D000686 ORTHO05D000512 6.7e-06 53.9 57 47.4
Glyma.10G282200 Glycine max HOM05D000686 ORTHO05D000512 8.7e-06 53.5 57 47.4


User provided reference genes

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