Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 3.7e-126 454.9 230 100.0
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 6.4e-123 444.1 230 96.5
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 4.8e-118 427.9 230 91.7
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.3e-115 419.9 228 91.2
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 4.9e-115 417.9 228 90.4
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 8.4e-115 417.2 228 90.4
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.9e-114 416.0 228 90.4
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 3.3e-111 405.2 217 93.5
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 3.2e-106 388.7 230 85.2
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.6e-105 386.3 228 84.6
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.6e-105 384.8 228 85.1
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 1.0e-104 383.6 230 81.7
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.4e-104 383.3 230 81.3
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 6.7e-104 380.9 230 81.3
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 4.3e-103 378.3 224 83.9
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 1.7e-102 376.3 231 81.4
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 1.7e-102 376.3 216 85.6
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 6.3e-102 374.4 264 75.0
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 1.1e-101 373.6 228 79.8
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 3.4e-100 368.6 230 81.3
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 5.9e-100 367.9 230 80.4
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 7.7e-100 367.5 227 80.6
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 3.8e-99 365.2 227 80.2
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 6.5e-99 364.4 219 80.8
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 6.5e-99 364.4 222 81.1
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 1.1e-98 363.6 220 83.6
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 2.5e-98 362.5 230 80.0
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 2.5e-98 362.5 221 82.8
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 4.2e-98 361.7 226 81.0
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 5.5e-98 361.3 230 78.7
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 9.4e-98 360.5 230 79.6
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 1.2e-97 360.1 226 77.9
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 1.6e-97 359.8 226 79.2
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 7.9e-97 357.5 227 75.3
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 1.4e-96 356.7 224 75.0
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.8e-96 356.3 230 74.8
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 1.8e-96 356.3 215 82.8
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.8e-96 356.3 230 75.2
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.8e-96 356.3 221 77.4
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 2.3e-96 355.9 221 77.8
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 3.9e-96 355.1 226 78.3
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 8.8e-96 354.0 223 75.3
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 8.8e-96 354.0 227 75.8
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 8.8e-96 354.0 228 78.9
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 8.8e-96 354.0 221 77.4
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 1.1e-95 353.6 217 79.7
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.1e-95 353.6 227 80.2
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 1.5e-95 353.2 227 73.6
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 1.5e-95 353.2 226 77.0
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.5e-95 353.2 226 74.8
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 2.6e-95 352.4 227 74.9
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 4.4e-95 351.7 223 75.3
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 4.4e-95 351.7 230 74.3
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 4.4e-95 351.7 230 73.5
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 5.7e-95 351.3 230 73.9
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 5.7e-95 351.3 218 77.1
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 7.4e-95 350.9 223 74.4
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 7.4e-95 350.9 230 74.3
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 7.4e-95 350.9 223 74.0
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 7.4e-95 350.9 230 74.8
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 9.7e-95 350.5 226 75.7
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.7e-94 349.7 230 76.1
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 1.7e-94 349.7 227 74.4
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 1.7e-94 349.7 227 74.9
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 3.7e-94 348.6 217 78.8
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 4.8e-94 348.2 224 73.7
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 6.3e-94 347.8 224 73.7
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 6.3e-94 347.8 226 75.2
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 6.3e-94 347.8 217 78.8
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 8.2e-94 347.4 221 74.2
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 8.2e-94 347.4 214 78.5
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.1e-93 347.1 230 75.2
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 1.1e-93 347.1 226 74.8
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 2.4e-93 345.9 224 73.2
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 3.1e-93 345.5 218 77.1
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 5.3e-93 344.7 227 74.9
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 9.1e-93 344.0 220 75.9
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 9.1e-93 344.0 220 75.9
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 1.5e-92 343.2 244 73.4
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 2.0e-92 342.8 215 75.8
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 2.6e-92 342.4 218 74.8
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 3.5e-92 342.0 228 75.4
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 3.5e-92 342.0 218 76.1
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 4.5e-92 341.7 220 77.3
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 7.7e-92 340.9 222 76.6
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.0e-91 340.5 216 74.5
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.3e-91 340.1 218 75.7
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 1.7e-91 339.7 214 76.6
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 1.7e-91 339.7 228 75.0
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 1.7e-91 339.7 224 74.1
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 2.9e-91 339.0 228 74.6
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 3.8e-91 338.6 212 78.3
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 5.0e-91 338.2 218 74.3
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 5.0e-91 338.2 228 74.1
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 5.0e-91 338.2 227 74.4
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 8.5e-91 337.4 214 76.2
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 1.1e-90 337.0 229 73.4
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 1.2e-89 333.6 227 72.7
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 1.2e-89 333.6 227 75.3
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 1.6e-89 333.2 202 77.2
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 3.6e-89 332.0 219 72.6
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 2.3e-88 329.3 202 81.2
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 3.0e-88 328.9 204 75.5
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 8.8e-88 327.4 219 71.7
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 8.8e-88 327.4 205 75.1
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 8.8e-88 327.4 224 71.0
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 1.5e-87 326.6 227 70.9
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 5.7e-87 324.7 227 70.0
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 1.3e-86 323.6 208 74.5
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 1.7e-86 323.2 224 70.5
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 1.7e-86 323.2 252 68.7
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 1.7e-86 323.2 222 69.4
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 3.7e-86 322.0 212 73.6
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 6.3e-86 321.2 217 74.2
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 6.3e-86 321.2 232 73.3
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 6.3e-86 321.2 206 73.3
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 1.4e-85 320.1 200 75.5
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 5.3e-85 318.2 201 76.1
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.7e-83 313.2 227 70.5
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.5e-82 310.1 203 73.4
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 2.5e-82 309.3 195 77.4
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 9.4e-82 307.4 213 72.3
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 9.4e-82 307.4 202 74.8
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 9.4e-82 307.4 213 72.3
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 8.2e-78 294.3 202 73.8
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 1.4e-77 293.5 197 70.6
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 3.1e-77 292.4 186 78.0
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 2.0e-76 289.7 213 69.5
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 5.9e-76 288.1 213 66.7
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 2.2e-75 286.2 202 67.3
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 3.8e-75 285.4 211 66.4
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 8.5e-75 284.3 216 65.7
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 3.6e-73 278.9 230 66.1
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 6.1e-73 278.1 220 65.0
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 1.5e-71 273.5 215 66.5
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 9.8e-71 270.8 173 77.5
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.8e-70 268.5 228 66.2
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 7.0e-69 264.6 208 66.3
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.9e-67 259.2 231 59.7
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 1.2e-65 253.8 159 78.6
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 1.6e-65 253.4 227 59.5
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 4.7e-65 251.9 206 61.7
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 8.0e-65 251.1 201 64.7
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 4.0e-64 248.8 157 75.2
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 4.4e-63 245.4 213 61.5
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 1.7e-62 243.4 152 80.9
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 6.3e-62 241.5 196 62.8
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 7.0e-61 238.0 213 58.7
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 3.5e-60 235.7 211 58.3
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 1.6e-57 226.9 152 74.3
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 3.6e-57 225.7 186 64.5
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 5.2e-56 221.9 216 55.6
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 8.9e-56 221.1 215 54.9
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 9.8e-55 217.6 218 53.7
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 4.6e-52 208.8 211 51.2
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 2.7e-44 183.0 238 45.0
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 6.6e-43 178.3 201 54.7
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 4.7e-41 172.2 110 79.1
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 5.2e-40 168.7 240 44.2
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 5.8e-39 165.2 123 71.5
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 3.7e-38 162.5 219 46.6
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 2.7e-36 156.4 102 69.6
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 1.3e-35 154.1 94 78.7
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 5.1e-35 152.1 109 67.9
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 1.1e-34 151.0 155 49.7
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 2.4e-32 143.3 79 83.5
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 2.6e-31 139.8 112 67.9
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 1.4e-29 134.0 83 80.7
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 2.1e-28 130.2 78 80.8
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 8.7e-27 124.8 157 41.4
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 1.5e-15 87.4 202 30.2
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 7.6e-15 85.1 73 60.3
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.1e-10 71.2 105 41.9
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 4.0e-08 62.8 74 51.4
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 9.0e-08 61.6 40 60.0


User provided reference genes

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