Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 2.3e-280 968.4 537 100.0
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 8.5e-251 870.2 558 87.5
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 7.0e-221 770.8 561 79.9
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 6.2e-201 704.5 559 71.7
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 4.0e-200 701.8 561 71.8
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 4.0e-200 701.8 561 71.8
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 3.5e-196 688.7 560 71.2
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.3e-195 686.8 560 71.2
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 3.0e-195 685.6 560 70.9
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 7.3e-194 681.0 559 66.4
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 2.6e-191 672.5 561 66.3
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 1.7e-190 669.8 551 66.4
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.7e-190 669.8 550 67.1
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 7.8e-188 661.0 562 64.8
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 3.0e-187 659.1 562 64.9
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 5.1e-187 658.3 552 65.8
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.5e-186 656.8 529 69.6
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.9e-186 656.4 549 67.9
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 1.3e-185 653.7 566 64.8
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 6.2e-185 651.4 562 64.9
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 8.1e-185 651.0 554 66.2
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.8e-184 649.8 571 63.9
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 4.0e-184 648.7 564 63.8
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 4.0e-184 648.7 577 65.3
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 7.6e-183 644.4 571 63.6
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 7.6e-183 644.4 558 64.5
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 1.3e-182 643.7 553 63.8
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 1.7e-182 643.3 547 64.4
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 4.9e-182 641.7 557 63.0
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 8.4e-182 641.0 553 63.1
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 1.1e-181 640.6 555 62.9
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.1e-181 640.6 554 62.6
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 3.2e-181 639.0 556 62.8
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 3.2e-181 639.0 565 63.5
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 5.4e-181 638.3 561 64.2
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.2e-180 637.1 553 62.7
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.2e-180 637.1 563 62.0
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 2.7e-180 636.0 554 62.5
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 2.7e-180 636.0 562 63.3
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 4.6e-180 635.2 563 62.7
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 6.0e-180 634.8 560 63.4
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 3.9e-179 632.1 550 63.8
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 3.9e-179 632.1 561 63.6
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 6.6e-179 631.3 551 62.8
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 1.5e-178 630.2 559 61.7
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 1.5e-178 630.2 540 65.0
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 5.6e-178 628.2 566 63.3
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 9.6e-178 627.5 565 62.8
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 2.1e-177 626.3 547 62.7
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 2.1e-177 626.3 560 62.1
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 1.1e-176 624.0 552 61.2
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 1.8e-176 623.2 550 62.5
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 2.4e-176 622.9 555 63.2
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 9.0e-176 620.9 543 62.8
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 2.6e-175 619.4 564 62.8
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 2.6e-175 619.4 547 62.5
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 9.9e-175 617.5 560 63.8
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 1.3e-174 617.1 551 61.7
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 1.3e-174 617.1 561 61.0
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 2.9e-174 615.9 549 62.3
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 1.4e-173 613.6 549 63.0
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 1.9e-173 613.2 544 61.9
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 1.9e-173 613.2 544 61.8
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 1.6e-172 610.1 533 66.0
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 1.6e-172 610.1 574 61.7
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 2.1e-172 609.8 544 61.4
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 2.7e-172 609.4 563 59.9
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 1.3e-171 607.1 555 61.4
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 1.9e-170 603.2 564 59.6
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 2.5e-170 602.8 566 60.6
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 2.1e-169 599.7 557 59.6
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 2.8e-169 599.4 554 62.6
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 1.8e-168 596.7 556 60.4
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 1.8e-168 596.7 556 60.1
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 9.0e-168 594.3 552 60.1
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 9.0e-168 594.3 556 60.4
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 2.6e-167 592.8 564 59.8
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 5.8e-167 591.7 553 59.5
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 3.8e-166 589.0 560 60.5
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 7.1e-165 584.7 584 57.9
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 6.0e-164 581.6 618 56.1
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 1.0e-163 580.9 587 56.9
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 1.3e-163 580.5 549 58.7
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 5.1e-163 578.6 552 58.9
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 5.1e-163 578.6 466 67.6
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 6.7e-163 578.2 557 59.6
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.1e-162 577.4 550 58.9
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 6.3e-161 571.6 559 59.0
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 5.3e-160 568.5 557 58.2
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 5.1e-155 552.0 568 56.2
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 1.5e-154 550.4 597 56.1
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 4.3e-154 548.9 497 59.8
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 1.6e-153 547.0 549 57.6
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 8.2e-153 544.7 582 55.8
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.9e-142 509.6 512 59.0
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 6.5e-142 508.4 449 60.6
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 4.4e-130 469.2 474 58.4
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 3.1e-128 463.0 574 48.4
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.2e-124 451.1 399 63.7
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 2.1e-124 450.3 537 51.2
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 4.9e-113 412.5 357 65.3
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 2.0e-111 407.1 461 50.1
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 3.6e-108 396.4 463 49.9
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 1.8e-107 394.0 361 60.1
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 4.7e-100 369.4 341 58.9
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 2.0e-98 364.0 305 63.9
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 3.7e-97 359.8 305 64.9
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 1.4e-96 357.8 305 63.9
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 2.4e-96 357.1 305 63.6
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 2.0e-95 354.0 274 69.0
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 4.7e-92 342.8 519 40.5
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 6.2e-92 342.4 341 54.8
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 5.2e-91 339.3 341 54.3
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 9.2e-88 328.6 359 52.6
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 2.1e-87 327.4 369 52.0
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 1.9e-80 304.3 525 40.0
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 2.4e-80 303.9 544 35.8
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 8.9e-75 285.4 275 62.9
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 7.6e-74 282.3 580 34.8
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 7.1e-72 275.8 270 60.7
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 2.9e-57 227.3 173 69.4
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 2.7e-47 194.1 556 29.3
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 9.0e-43 179.1 269 45.4
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 5.5e-40 169.9 160 59.4
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 1.1e-37 162.2 126 69.8
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 1.6e-36 158.3 172 54.7
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 4.6e-31 140.2 336 28.3
MD08G1139200 Malus domestica HOM05D005160 ORTHO05D006127 4.6e-31 140.2 127 66.1
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.1e-27 129.0 92 73.9
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 6.9e-27 126.3 365 29.6
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 6.9e-27 126.3 87 72.4
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 1.0e-25 122.5 366 24.9
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 3.2e-24 117.5 76 77.6
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 5.5e-24 116.7 131 48.9
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 5.2e-22 110.2 157 46.5
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 9.7e-21 105.9 131 44.3
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.7e-20 105.1 372 26.9
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 3.1e-19 100.9 352 26.4
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 1.0e-17 95.9 511 24.5
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 4.8e-12 77.0 441 22.7
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 5.3e-11 73.6 211 31.3
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 1.5e-08 65.5 50 58.0
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 4.2e-08 63.9 44 70.5


User provided reference genes

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