Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 2.0e-165 585.9 343 100.0
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 7.3e-131 471.1 351 76.6
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 2.3e-124 449.5 353 72.0
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 8.7e-124 447.6 341 79.8
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.5e-123 446.8 350 80.0
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.5e-123 446.8 345 78.6
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.9e-123 446.4 355 78.9
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 2.5e-123 446.0 352 79.5
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 1.9e-118 429.9 359 66.3
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 3.3e-115 419.1 352 65.1
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 5.5e-110 401.7 349 64.2
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 7.1e-110 401.4 347 65.4
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 1.2e-109 400.6 362 71.0
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 1.6e-109 400.2 347 63.4
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 1.0e-108 397.5 345 64.6
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 1.8e-108 396.7 355 68.2
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 2.3e-108 396.4 345 62.9
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 6.7e-108 394.8 321 66.4
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 6.7e-108 394.8 346 61.0
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.9e-107 393.3 346 60.7
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 4.3e-107 392.1 346 62.4
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 1.6e-106 390.2 346 63.3
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.8e-106 389.4 347 60.2
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 1.1e-105 387.5 349 65.6
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 6.9e-105 384.8 345 65.5
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 9.0e-105 384.4 345 62.6
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.5e-104 383.6 346 55.5
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 2.6e-104 382.9 348 61.8
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 4.5e-104 382.1 329 72.0
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 5.9e-104 381.7 345 56.2
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 1.0e-103 380.9 343 62.7
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 1.3e-103 380.6 343 62.4
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 2.5e-102 376.3 344 64.8
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 4.2e-102 375.6 346 64.7
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 1.2e-101 374.0 380 63.2
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 1.6e-101 373.6 347 57.9
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 1.6e-101 373.6 339 64.3
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 3.6e-101 372.5 344 64.2
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 1.4e-100 370.5 338 64.5
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 1.5e-99 367.1 344 57.6
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 2.0e-99 366.7 347 62.8
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 4.3e-99 365.5 346 56.4
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 2.2e-98 363.2 348 54.0
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 2.6e-96 356.3 338 57.7
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 3.4e-96 355.9 347 54.2
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 4.5e-96 355.5 344 59.3
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 2.9e-95 352.8 346 49.1
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 1.4e-94 350.5 348 58.6
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 2.5e-94 349.7 350 63.4
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 3.2e-94 349.4 347 48.7
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 7.2e-94 348.2 348 51.7
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.6e-93 347.1 349 51.3
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 2.7e-93 346.3 341 59.8
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 6.1e-93 345.1 356 53.1
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 1.1e-91 340.9 351 53.8
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 9.7e-91 337.8 345 59.1
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 4.8e-90 335.5 345 50.1
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 1.8e-89 333.6 347 57.1
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 1.8e-89 333.6 347 53.0
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 9.1e-89 331.3 338 56.5
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 1.2e-88 330.9 365 52.6
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 1.5e-88 330.5 350 52.3
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 1.5e-88 330.5 339 57.5
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 7.7e-88 328.2 339 52.8
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.9e-86 323.6 340 52.1
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 3.6e-85 319.3 338 55.0
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 6.1e-85 318.5 338 53.3
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 3.0e-84 316.2 291 57.7
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 8.8e-84 314.7 341 50.4
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 1.1e-83 314.3 341 51.3
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 3.3e-83 312.8 349 59.3
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 3.3e-83 312.8 349 59.3
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 2.2e-82 310.1 350 56.3
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 3.7e-82 309.3 341 53.4
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 6.3e-82 308.5 349 53.6
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 8.2e-82 308.1 349 53.6
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 1.1e-81 307.8 350 56.0
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 1.1e-81 307.8 350 56.0
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 1.1e-81 307.8 350 56.0
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 1.1e-81 307.8 328 57.3
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 1.8e-81 307.0 343 57.4
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 2.4e-81 306.6 347 59.4
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 2.4e-81 306.6 349 53.3
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 3.1e-81 306.2 338 49.1
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 3.1e-81 306.2 350 56.0
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 3.1e-81 306.2 333 54.4
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 5.3e-81 305.4 368 53.5
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 1.2e-80 304.3 349 51.6
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 2.0e-80 303.5 343 58.6
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 2.0e-80 303.5 368 53.5
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 5.9e-80 302.0 380 55.5
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 8.5e-79 298.1 380 55.8
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 2.3e-76 290.0 349 54.4
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 5.7e-75 285.4 334 50.3
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 2.2e-74 283.5 342 45.0
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 2.8e-74 283.1 330 57.6
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.2e-71 273.5 340 41.5
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 6.5e-71 271.9 338 41.4
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.9e-70 270.4 338 41.7
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 7.2e-70 268.5 346 46.5
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 9.4e-70 268.1 343 46.6
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 1.7e-66 257.3 350 45.7
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.7e-66 257.3 338 41.1
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 1.4e-65 254.2 127 90.6
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 9.5e-62 241.5 131 90.8
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 3.6e-61 239.6 280 56.1
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 2.3e-60 236.9 325 41.8
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 2.2e-58 230.3 395 44.8
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 3.7e-58 229.6 322 46.9
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 8.3e-58 228.4 341 46.3
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 5.4e-57 225.7 331 38.7
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 2.7e-56 223.4 349 51.6
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 2.3e-55 220.3 341 37.5
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 5.6e-46 189.1 342 40.6
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 7.3e-46 188.7 158 57.0
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 6.8e-44 182.2 255 38.4
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 9.8e-43 178.3 181 56.9
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 3.5e-40 169.9 115 60.0
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 8.3e-34 148.7 142 48.6
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 1.4e-33 147.9 321 35.2
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 4.9e-26 122.9 320 25.9
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 3.5e-24 116.7 141 42.6
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 4.6e-24 116.3 111 46.8
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 9.6e-22 108.6 99 49.5
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 2.8e-21 107.1 233 42.1
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 1.7e-18 97.8 63 69.8
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 2.9e-18 97.1 347 26.2
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 6.4e-10 69.3 56 51.8
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 5.4e-09 66.2 88 39.8
AagrBONN_evm.TU.Sc2ySwM_368.1639 Anthoceros agrestis HOM05D006293 ORTHO05D009176 3.0e-07 60.5 145 30.3
Mapoly0022s0141 Marchantia polymorpha HOM05D021038 ORTHO05D009018 5.1e-07 59.7 90 36.7
Mapoly0090s0021 Marchantia polymorpha HOM05D021038 ORTHO05D009018 1.1e-06 58.5 107 34.6
PGR042G3583 Punica granatum HOM05D007363 ORTHO05D009018 2.5e-06 57.4 82 43.9
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 9.6e-06 55.5 99 36.4


User provided reference genes

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