Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 0.0e+00 1481.1 1041 100.0
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 5.1e-300 1034.6 1079 75.1
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 3.2e-270 935.6 1061 72.2
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 4.8e-266 921.8 1061 71.6
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 3.2e-262 909.1 1070 71.9
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.3e-239 833.9 1061 69.4
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 5.7e-235 818.5 1060 67.6
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.3e-234 817.4 1059 67.5
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 5.7e-211 738.8 1150 58.8
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 1.7e-210 737.3 1104 62.8
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 1.7e-207 727.2 1156 60.5
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 1.5e-206 724.2 1119 62.6
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 8.0e-205 718.4 1148 55.4
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 2.7e-192 676.8 1121 59.8
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 2.2e-186 657.1 1062 60.5
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 8.6e-183 645.2 1086 58.8
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 4.0e-180 636.3 1134 58.3
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 1.2e-179 634.8 1123 59.1
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 5.8e-179 632.5 1107 54.7
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 7.1e-177 625.5 1114 54.3
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 6.6e-175 619.0 1129 57.5
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 1.5e-174 617.8 1111 57.3
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 3.3e-174 616.7 1104 53.3
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 3.6e-173 613.2 1160 47.0
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 2.4e-172 610.5 1055 61.0
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 1.4e-169 601.3 1125 55.5
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 7.1e-169 599.0 1120 51.6
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 7.1e-169 599.0 1190 50.8
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 1.6e-168 597.8 1106 57.4
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.6e-165 587.8 1102 57.4
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 1.4e-164 584.7 1142 56.4
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 4.0e-164 583.2 1086 52.9
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 2.0e-163 580.9 1137 55.3
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 5.4e-161 572.8 934 64.0
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 9.3e-161 572.0 1195 50.0
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 1.7e-159 567.8 1095 53.3
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 1.5e-158 564.7 1121 56.2
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 1.7e-154 551.2 1064 56.6
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 4.9e-154 549.7 1107 56.6
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 1.6e-152 544.7 1108 53.1
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 7.9e-152 542.3 1175 52.9
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 1.8e-151 541.2 1175 52.6
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 8.7e-151 538.9 1128 54.5
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 5.6e-150 536.2 1134 55.4
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 5.6e-150 536.2 1126 53.7
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 2.1e-149 534.3 1128 54.4
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 3.7e-149 533.5 1120 54.9
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 1.8e-148 531.2 1109 53.6
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 2.4e-148 530.8 1102 56.1
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 1.2e-147 528.5 906 62.1
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 3.4e-147 526.9 1128 54.1
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 3.8e-146 523.5 827 66.9
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 7.1e-145 519.2 1099 54.8
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 1.8e-143 514.6 1121 54.1
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 2.3e-143 514.2 1102 53.5
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 1.5e-142 511.5 1110 52.9
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 1.5e-142 511.5 813 65.8
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 3.3e-142 510.4 1130 53.1
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 2.8e-141 507.3 1091 54.0
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 2.8e-141 507.3 1103 53.3
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 1.4e-140 505.0 1074 50.1
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 6.5e-138 496.1 1149 53.1
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 1.4e-137 495.0 816 59.8
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 1.4e-137 495.0 707 73.6
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 1.9e-137 494.6 1112 53.5
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 1.3e-135 488.4 1140 53.1
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 8.7e-135 485.7 730 65.6
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 1.6e-133 481.5 1156 52.9
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 2.2e-133 481.1 1123 52.9
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 2.8e-133 480.7 1104 53.4
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 6.3e-133 479.6 765 64.2
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 1.4e-132 478.4 1103 53.9
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 2.4e-132 477.6 498 77.9
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 4.1e-132 476.9 823 64.6
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 1.5e-131 474.9 803 60.4
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 7.2e-129 466.1 868 50.2
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 6.3e-125 453.0 1081 49.6
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 2.4e-124 451.1 1113 51.7
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 1.5e-123 448.4 1071 53.3
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.2e-122 444.5 749 67.0
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 3.8e-122 443.7 824 62.7
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 1.1e-121 442.2 1168 50.8
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 1.1e-121 442.2 809 64.5
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 8.8e-119 432.6 1094 52.2
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 2.4e-116 424.5 834 61.9
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 4.1e-116 423.7 1141 49.6
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 5.9e-115 419.9 1144 49.4
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 6.5e-114 416.4 1131 49.0
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 4.7e-112 410.2 653 68.3
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 8.0e-112 409.5 1144 49.0
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 1.0e-111 409.1 1162 48.3
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 3.3e-110 404.1 697 62.8
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 4.7e-104 383.6 779 53.9
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 2.0e-102 378.3 915 54.6
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 1.3e-93 349.0 728 51.2
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 4.3e-81 307.4 690 64.2
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 8.6e-74 283.1 258 54.3
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 2.0e-62 245.4 165 73.9
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 3.0e-50 204.9 272 83.5
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 2.8e-48 198.4 693 58.4
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 1.4e-47 196.1 726 44.2
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.8e-47 195.7 690 44.3
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 9.0e-47 193.4 243 45.7
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 5.8e-46 190.7 673 45.8
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 3.0e-42 178.3 122 70.5
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 1.9e-41 175.6 318 63.5
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.3e-40 172.9 282 38.3
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.6e-40 172.6 707 43.7
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.5e-38 166.0 293 70.3
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.5e-38 166.0 238 42.0
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.4e-36 159.5 278 36.0
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.9e-36 159.1 283 39.6
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 6.7e-34 150.6 313 68.1
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 6.7e-34 150.6 119 64.7
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.5e-33 149.4 128 60.9
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.1e-32 145.6 107 70.1
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 2.2e-29 135.6 320 31.2
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 1.3e-26 126.3 125 55.2
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 5.1e-26 124.4 155 40.6
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.4e-23 116.3 239 30.5
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 5.0e-21 107.8 91 52.7
QL11p047023 Quercus lobata HOM05D005996 ORTHO05D007507 1.5e-17 96.3 109 57.8
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 5.7e-17 94.4 99 71.7
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 1.8e-15 89.4 245 31.4
SMO106G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 5.1e-10 71.2 75 50.7
MBI09_g46961_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 6.3e-08 64.3 37 78.4
SEGI_16644 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 6.9e-07 60.8 42 66.7


User provided reference genes

Program Settings