Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1105400 Malus domestica HOM05D001568 ORTHO05D009161 2.6e-42 174.9 82 100.0
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 1.5e-26 122.5 114 56.1
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 1.3e-25 119.4 72 76.4
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 1.1e-24 116.3 72 73.6
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 5.4e-24 114.0 73 74.0
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 1.3e-22 109.4 73 72.6
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 1.3e-22 109.4 73 72.6
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 2.3e-22 108.6 74 74.3
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 3.0e-22 108.2 72 68.1
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 3.9e-22 107.8 72 69.4
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 5.1e-22 107.5 73 71.2
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 1.1e-21 106.3 73 71.2
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 1.9e-21 105.5 72 69.4
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 5.6e-21 104.0 73 68.5
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 7.4e-21 103.6 73 67.1
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 2.8e-20 101.7 74 68.9
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 2.8e-20 101.7 77 61.0
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 4.8e-20 100.9 101 49.5
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 4.8e-20 100.9 74 63.5
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 8.1e-20 100.1 73 64.4
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 8.1e-20 100.1 73 61.6
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 1.1e-19 99.8 73 67.1
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 1.8e-19 99.0 74 59.5
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 4.0e-19 97.8 74 58.1
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 9.0e-19 96.7 74 54.1
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 1.5e-18 95.9 73 64.4
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 2.0e-18 95.5 75 61.3
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 2.0e-18 95.5 72 59.7
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 4.5e-18 94.4 72 58.3
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 5.8e-18 94.0 73 63.0
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 5.8e-18 94.0 74 60.8
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 7.6e-18 93.6 73 58.9
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 7.6e-18 93.6 76 60.5
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 1.3e-17 92.8 73 63.0
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 2.2e-17 92.0 73 58.9
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 2.9e-17 91.7 76 59.2
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 3.8e-17 91.3 72 55.6
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 3.8e-17 91.3 72 52.8
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 3.8e-17 91.3 72 58.3
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 4.9e-17 90.9 79 57.0
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 6.5e-17 90.5 74 62.2
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 8.4e-17 90.1 73 58.9
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 8.4e-17 90.1 73 58.9
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 8.4e-17 90.1 73 58.9
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 8.4e-17 90.1 73 58.9
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 8.4e-17 90.1 73 58.9
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 8.4e-17 90.1 74 59.5
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 8.4e-17 90.1 73 58.9
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 8.4e-17 90.1 76 57.9
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 8.4e-17 90.1 72 56.9
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 1.1e-16 89.7 73 58.9
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 1.1e-16 89.7 75 56.0
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 1.1e-16 89.7 75 54.7
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 1.4e-16 89.4 72 55.6
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 1.9e-16 89.0 73 57.5
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 2.5e-16 88.6 76 56.6
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 3.2e-16 88.2 75 57.3
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 4.2e-16 87.8 74 60.8
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 5.5e-16 87.4 72 56.9
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 5.5e-16 87.4 73 54.8
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 5.5e-16 87.4 74 58.1
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 7.1e-16 87.0 75 57.3
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 1.2e-15 86.3 72 55.6
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 1.2e-15 86.3 74 54.1
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 1.2e-15 86.3 74 59.5
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 1.6e-15 85.9 75 57.3
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 1.6e-15 85.9 76 59.2
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 1.6e-15 85.9 74 58.1
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 2.7e-15 85.1 74 58.1
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 2.7e-15 85.1 78 55.1
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 2.7e-15 85.1 72 59.7
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 2.7e-15 85.1 72 54.2
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 3.5e-15 84.7 74 55.4
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 3.5e-15 84.7 69 55.1
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 4.6e-15 84.3 69 55.1
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 7.9e-15 83.6 74 51.4
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 1.3e-14 82.8 73 58.9
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 3.0e-14 81.6 72 58.3
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 6.7e-14 80.5 76 56.6
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 1.1e-13 79.7 75 49.3
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 1.5e-13 79.3 72 58.3
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 1.9e-13 79.0 73 53.4
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 1.9e-13 79.0 65 55.4
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 3.3e-13 78.2 72 55.6
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 2.8e-12 75.1 71 54.9
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 2.8e-12 75.1 71 54.9
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 4.8e-12 74.3 75 57.3
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 6.2e-12 73.9 74 44.6
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 1.8e-11 72.4 75 56.0
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 1.5e-10 69.3 75 52.0
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 2.6e-10 68.6 72 51.4
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 7.6e-10 67.0 72 43.1
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 3.8e-09 64.7 85 43.5
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 8.4e-09 63.5 72 44.4
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 5.5e-08 60.8 78 43.6
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 5.5e-08 60.8 78 43.6
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 7.9e-07 57.0 76 34.2
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 3.0e-06 55.1 72 41.7
ECA234G4452 Erigeron canadensis HOM05D000058 ORTHO05D000255 5.1e-06 54.3 54 46.3
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 5.1e-06 54.3 45 55.6


User provided reference genes

Program Settings