Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1104900 Malus domestica HOM05D000031 ORTHO05D248601 5.3e-44 180.6 91 100.0
MD05G1105300 Malus domestica HOM05D000031 ORTHO05D001033 7.1e-25 117.1 90 68.9
MD05G1105000 Malus domestica HOM05D000031 ORTHO05D001033 1.6e-21 105.9 88 64.8
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 4.6e-16 87.8 89 56.2
MD10G1109800 Malus domestica HOM05D000031 ORTHO05D001033 2.4e-12 75.5 93 46.2
Prupe.8G149400 Prunus persica HOM05D000031 ORTHO05D001033 1.5e-11 72.8 91 42.9
FAN15G1926 Fragaria x ananassa HOM05D000031 ORTHO05D001033 2.6e-11 72.0 85 44.7
RcHm_v2.0_Chr6g0248521 Rosa chinensis HOM05D000031 ORTHO05D001033 7.7e-11 70.5 94 43.6
FAN15G0364 Fragaria x ananassa HOM05D000031 ORTHO05D001033 1.3e-10 69.7 86 44.2
FAN15G1957 Fragaria x ananassa HOM05D000031 ORTHO05D001033 2.2e-10 68.9 88 44.3
RcHm_v2.0_Chr7g0194561 Rosa chinensis HOM05D000031 ORTHO05D019088 2.9e-10 68.6 92 45.7
FvH4_2g09830 Fragaria vesca HOM05D000031 ORTHO05D001033 3.8e-10 68.2 88 43.2
FAN27G3298 Fragaria x ananassa HOM05D000031 ORTHO05D001033 3.8e-10 68.2 86 43.0
FvH4_2g03430 Fragaria vesca HOM05D000031 ORTHO05D001033 5.0e-10 67.8 86 43.0
RcHm_v2.0_Chr6g0266181 Rosa chinensis HOM05D000031 ORTHO05D001033 6.5e-10 67.4 88 43.2
FvH4_2g03431 Fragaria vesca HOM05D000106 ORTHO05D019088 8.5e-10 67.0 85 43.5
RcHm_v2.0_Chr7g0194481 Rosa chinensis HOM05D000031 ORTHO05D019088 1.4e-09 66.2 92 43.5
FAN24G2007 Fragaria x ananassa HOM05D000031 ORTHO05D001033 1.9e-09 65.9 83 41.0
RcHm_v2.0_Chr6g0248591 Rosa chinensis HOM05D000031 ORTHO05D001033 2.5e-09 65.5 86 46.5
RcHm_v2.0_Chr6g0249101 Rosa chinensis HOM05D000031 ORTHO05D001033 7.2e-09 63.9 85 43.5
Haze_10306 Corylus avellana HOM05D000031 ORTHO05D001033 1.2e-08 63.2 86 44.2
Hma1.2p1_1758F.1_g301130 Hydrangea macrophylla HOM05D000031 ORTHO05D001033 2.1e-08 62.4 82 40.2
AT3G57720 Arabidopsis thaliana HOM05D000031 ORTHO05D001033 2.7e-08 62.0 78 39.7
Os01g0227200 Oryza sativa ssp. japonica HOM05D000085 ORTHO05D000274 4.7e-08 61.2 84 38.1
Os09g0562600 Oryza sativa ssp. japonica HOM05D000031 ORTHO05D000030 4.7e-08 61.2 81 39.5
Zm00001eb209700 Zea mays HOM05D000031 ORTHO05D000030 6.1e-08 60.8 88 34.1
FAN15G1649 Fragaria x ananassa HOM05D000031 ORTHO05D001033 7.9e-08 60.5 85 41.2
Zm00001eb035220 Zea mays HOM05D000031 ORTHO05D000030 7.9e-08 60.5 86 34.9
FAN15G3624 Fragaria x ananassa HOM05D000031 ORTHO05D001033 1.0e-07 60.1 85 45.9
SEGI_13169 Sequoiadendron giganteum HOM05D000029 ORTHO05D002586 1.0e-07 60.1 71 43.7
SEGI_33588 Sequoiadendron giganteum HOM05D000029 ORTHO05D002586 1.0e-07 60.1 71 43.7
SEGI_36629 Sequoiadendron giganteum HOM05D000029 ORTHO05D002586 1.0e-07 60.1 71 43.7
Dinv04073 Davidia involucrata HOM05D000031 ORTHO05D001033 1.4e-07 59.7 81 39.5
Os08g0378300 Oryza sativa ssp. japonica HOM05D000031 ORTHO05D000030 1.4e-07 59.7 84 34.5
Sabra02G0003300 Salix brachista HOM05D000031 ORTHO05D001033 1.4e-07 59.7 86 46.5
AUR62003454 Chenopodium quinoa HOM05D000031 ORTHO05D000030 1.8e-07 59.3 76 42.1
SEGI_03739 Sequoiadendron giganteum HOM05D000029 ORTHO05D002586 1.8e-07 59.3 77 39.0
SEGI_16007 Sequoiadendron giganteum HOM05D000029 ORTHO05D002586 1.8e-07 59.3 77 39.0
Carub.0005s2456 Capsella rubella HOM05D000031 ORTHO05D001033 2.3e-07 58.9 75 37.3
CBR_g54181 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-07 58.9 83 37.3
SEGI_16550 Sequoiadendron giganteum HOM05D000106 ORTHO05D000160 2.3e-07 58.9 79 36.7
SEGI_22657 Sequoiadendron giganteum HOM05D000029 ORTHO05D002586 2.3e-07 58.9 74 40.5
MD10G1109700 Malus domestica HOM05D000134 ORTHO05D019088 3.0e-07 58.5 71 45.1
Potri.002G004900 Populus trichocarpa HOM05D000031 ORTHO05D001033 3.9e-07 58.2 86 41.9
Dinv09507 Davidia involucrata HOM05D000031 ORTHO05D001033 5.1e-07 57.8 90 36.7
Os08g0501500 Oryza sativa ssp. japonica HOM05D000031 ORTHO05D000030 5.1e-07 57.8 87 32.2
Cpa.g.sc131.46 Carica papaya HOM05D000085 ORTHO05D001756 6.7e-07 57.4 86 36.0
Prupe.8G149300 Prunus persica HOM05D000031 ORTHO05D001033 6.7e-07 57.4 83 45.8
Prupe.8G149600 Prunus persica HOM05D000031 ORTHO05D001033 6.7e-07 57.4 83 45.8
SEGI_18790 Sequoiadendron giganteum HOM05D000106 ORTHO05D000160 6.7e-07 57.4 73 39.7
C09p48660 Brassica napus HOM05D000031 ORTHO05D001033 8.8e-07 57.0 80 37.5
Hma1.2p1_0661F.1_g197870 Hydrangea macrophylla HOM05D000031 ORTHO05D001033 8.8e-07 57.0 80 43.8
Dinv04072 Davidia involucrata HOM05D000031 ORTHO05D001033 1.1e-06 56.6 87 37.9
Dinv09508 Davidia involucrata HOM05D000031 ORTHO05D001033 1.1e-06 56.6 87 37.9
Dinv09509 Davidia involucrata HOM05D000031 ORTHO05D001033 1.1e-06 56.6 88 36.4
Zm00001eb161420 Zea mays HOM05D000085 ORTHO05D001756 1.1e-06 56.6 85 36.5
Manes.05G145100 Manihot esculenta HOM05D000237 ORTHO05D001145 1.5e-06 56.2 85 35.3
RcHm_v2.0_Chr6g0266231 Rosa chinensis HOM05D000031 ORTHO05D019088 1.5e-06 56.2 71 45.1
Actinidia16594 Actinidia chinensis HOM05D000031 ORTHO05D000030 2.0e-06 55.8 75 38.7
Thhalv10006071m.g Eutrema salsugineum HOM05D000031 ORTHO05D001033 2.0e-06 55.8 81 34.6
PGR102G2728 Punica granatum HOM05D000166 ORTHO05D001532 2.0e-06 55.8 81 35.8
AL5G39340 Arabidopsis lyrata HOM05D000031 ORTHO05D001033 2.6e-06 55.5 78 34.6
CSS0028144 Camellia sinensis var. sinensis HOM05D000031 ORTHO05D000030 2.6e-06 55.5 78 35.9
Oeu052180.1 Olea europaea HOM05D000041 ORTHO05D001532 2.6e-06 55.5 84 34.5
Zm00001eb426060 Zea mays HOM05D000041 ORTHO05D001532 2.6e-06 55.5 87 34.5
EL10Ac7g15779 Beta vulgaris HOM05D000085 ORTHO05D001756 3.3e-06 55.1 79 38.0
Solyc07g007020.3 Solanum lycopersicum HOM05D000031 ORTHO05D000030 3.3e-06 55.1 73 41.1
Sopen07g003090 Solanum pennellii HOM05D000031 ORTHO05D000030 3.3e-06 55.1 73 41.1
A07p23660 Brassica napus HOM05D000031 ORTHO05D001033 4.4e-06 54.7 83 36.1
BraA07t30019Z Brassica rapa HOM05D000031 ORTHO05D001033 4.4e-06 54.7 83 36.1
CAN.G518.5 Capsicum annuum HOM05D000031 ORTHO05D000030 4.4e-06 54.7 73 39.7
MD10G1109300 Malus domestica HOM05D000031 ORTHO05D001033 4.4e-06 54.7 65 43.1
Zm00001eb357760 Zea mays HOM05D000085 ORTHO05D001756 4.4e-06 54.7 78 37.2
AL5G39400 Arabidopsis lyrata HOM05D000031 ORTHO05D001033 5.7e-06 54.3 83 33.7
AT3G57750 Arabidopsis thaliana HOM05D000031 ORTHO05D001033 5.7e-06 54.3 83 33.7
SEGI_41362 Sequoiadendron giganteum HOM05D000237 ORTHO05D001145 5.7e-06 54.3 72 37.5
BcaB02g08297 Brassica carinata HOM05D000031 ORTHO05D001033 7.4e-06 53.9 87 33.3
CiPaw.03G006200 Carya illinoinensis HOM05D000085 ORTHO05D000274 7.4e-06 53.9 84 34.5
Gorai.006G018600 Gossypium raimondii HOM05D000031 ORTHO05D000030 7.4e-06 53.9 55 45.5
Sp5g04930 Schrenkiella parvula HOM05D000031 ORTHO05D001033 7.4e-06 53.9 87 33.3
CARHR167990 Cardamine hirsuta HOM05D000031 ORTHO05D001033 9.7e-06 53.5 91 33.0
Cc09_g05880 Coffea canephora HOM05D000031 ORTHO05D000030 9.7e-06 53.5 79 36.7
Nn7g36565 Nelumbo nucifera HOM05D000031 ORTHO05D000030 9.7e-06 53.5 76 36.8
SEGI_15821 Sequoiadendron giganteum HOM05D000237 ORTHO05D005051 9.7e-06 53.5 78 35.9
Sc12g0009780 Simmondsia chinensis HOM05D000085 ORTHO05D001756 9.7e-06 53.5 79 35.4
Zm00001eb042720 Zea mays HOM05D000031 ORTHO05D000030 9.7e-06 53.5 81 33.3


User provided reference genes

Program Settings