Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1100400 Malus domestica HOM05D002857 ORTHO05D008347 1.7e-123 446.0 227 100.0
MD05G1100100 Malus domestica HOM05D002857 ORTHO05D008347 5.4e-122 441.0 227 98.7
Prupe.8G144800 Prunus persica HOM05D002857 ORTHO05D008347 9.3e-90 334.0 224 75.9
RcHm_v2.0_Chr6g0253801 Rosa chinensis HOM05D002857 ORTHO05D008347 4.2e-82 308.5 229 70.3
FvH4_2g04342 Fragaria vesca HOM05D002857 ORTHO05D008347 1.2e-81 307.0 224 69.6
CiPaw.05G017800 Carya illinoinensis HOM05D002857 ORTHO05D008347 1.6e-78 296.6 233 67.8
Cfa009507 Carpinus fangiana HOM05D002857 ORTHO05D008347 2.1e-78 296.2 213 70.4
CiPaw.06G165500 Carya illinoinensis HOM05D002857 ORTHO05D008347 3.7e-78 295.4 165 85.5
Cfa004654 Carpinus fangiana HOM05D002857 ORTHO05D008347 4.0e-77 292.0 213 68.5
Haze_10256 Corylus avellana HOM05D002857 ORTHO05D008347 9.0e-77 290.8 216 68.5
QL07p014115 Quercus lobata HOM05D002857 ORTHO05D008347 1.5e-76 290.0 164 83.5
Potri.009G088200 Populus trichocarpa HOM05D002857 ORTHO05D008347 1.9e-74 283.1 237 64.6
Cfa010108 Carpinus fangiana HOM05D002857 ORTHO05D008347 9.3e-74 280.8 215 67.0
Atru.chr5.2351 Acer truncatum HOM05D002857 ORTHO05D008347 1.2e-73 280.4 221 64.3
Ciclev10029201m.g Citrus clementina HOM05D002857 ORTHO05D008347 1.6e-73 280.0 214 65.9
Sabra09G0068300 Salix brachista HOM05D002857 ORTHO05D008347 1.6e-73 280.0 233 65.2
vmacro19465 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 2.1e-73 279.6 163 77.3
vmacro23229 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 2.1e-73 279.6 163 77.3
Duzib132G1128 Durio zibethinus HOM05D002857 ORTHO05D008347 4.6e-73 278.5 223 63.7
Manes.10G081600 Manihot esculenta HOM05D002857 ORTHO05D008347 4.6e-73 278.5 221 63.8
CSS0041876 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D008347 7.9e-73 277.7 190 69.5
TAR381G0590 Trochodendron aralioides HOM05D002857 ORTHO05D008347 7.9e-73 277.7 218 67.4
Cpa.g.sc106.48 Carica papaya HOM05D002857 ORTHO05D008347 1.3e-72 276.9 231 63.6
Dinv15807 Davidia involucrata HOM05D002857 ORTHO05D008347 1.3e-72 276.9 161 80.1
TWI14G1023 Tripterygium wilfordii HOM05D002857 ORTHO05D008347 3.0e-72 275.8 163 79.8
GSVIVG01037837001 Vitis vinifera HOM05D002857 ORTHO05D008347 3.9e-72 275.4 162 79.6
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 6.7e-72 274.6 179 73.2
Gohir.D12G019900 Gossypium hirsutum HOM05D002857 ORTHO05D008347 3.3e-71 272.3 165 75.2
Actinidia34361 Actinidia chinensis HOM05D002857 ORTHO05D008347 4.3e-71 271.9 177 71.2
Gohir.A12G019700 Gossypium hirsutum HOM05D002857 ORTHO05D008347 9.6e-71 270.8 165 74.5
Glyma.17G078200 Glycine max HOM05D002857 ORTHO05D008347 1.3e-70 270.4 166 74.7
Eucgr.I01062 Eucalyptus grandis HOM05D002857 ORTHO05D008347 1.6e-70 270.0 227 60.4
Thecc.02G117000 Theobroma cacao HOM05D002857 ORTHO05D008347 1.6e-70 270.0 166 74.7
Phvul.003G185000 Phaseolus vulgaris HOM05D002857 ORTHO05D008347 2.1e-70 269.6 178 69.1
PGR120G0011 Punica granatum HOM05D002857 ORTHO05D008347 3.7e-70 268.9 177 71.2
PGR142G0748 Punica granatum HOM05D002857 ORTHO05D008347 3.7e-70 268.9 177 71.2
Nn5g30580 Nelumbo nucifera HOM05D002857 ORTHO05D008347 6.2e-70 268.1 164 76.8
Lj5A219T41 Lonicera japonica HOM05D002857 ORTHO05D008347 1.1e-69 267.3 160 75.0
CANSAT35G0667 Cannabis sativa HOM05D002857 ORTHO05D008347 1.8e-69 266.5 188 68.1
Gorai.008G020300 Gossypium raimondii HOM05D002857 ORTHO05D008347 2.4e-69 266.2 240 57.5
FAN24G3287 Fragaria x ananassa HOM05D001904 ORTHO05D008347 4.1e-69 265.4 224 62.9
Lalb_Chr06g0165111 Lupinus albus HOM05D002857 ORTHO05D008347 4.1e-69 265.4 166 72.9
MELO3C018011.2 Cucumis melo HOM05D002857 ORTHO05D008347 5.3e-69 265.0 166 72.9
Lj4g0011899 Lotus japonicus HOM05D002857 ORTHO05D008347 6.9e-69 264.6 223 59.6
ClCG10G010270 Citrullus lanatus HOM05D002857 ORTHO05D008347 9.0e-69 264.2 206 64.6
TPR.G2009 Trifolium pratense HOM05D002857 ORTHO05D008347 9.0e-69 264.2 165 74.5
Oeu010450.1 Olea europaea HOM05D002857 ORTHO05D008347 1.5e-68 263.5 168 72.6
Psat0s3618g0120 Pisum sativum HOM05D002857 ORTHO05D008347 1.5e-68 263.5 165 73.9
Potri.001G293700 Populus trichocarpa HOM05D002857 ORTHO05D008347 1.5e-68 263.5 240 61.7
Medtr4g109520 Medicago truncatula HOM05D002857 ORTHO05D008347 2.0e-68 263.1 166 72.9
CsaV3_4G000220 Cucumis sativus L. HOM05D002857 ORTHO05D008347 3.4e-68 262.3 164 72.6
Nitab4.5_0008075g0040 Nicotiana tabacum HOM05D002857 ORTHO05D008347 4.5e-68 261.9 161 73.9
HanXRQChr01g0025491 Helianthus annuus HOM05D002857 ORTHO05D008347 5.8e-68 261.5 167 74.3
DCAR_001699 Daucus carota HOM05D002857 ORTHO05D008347 7.6e-68 261.2 191 66.5
Aqoxy6G02637 Aquilegia oxysepala HOM05D002857 ORTHO05D008347 1.0e-67 260.8 198 64.6
Sed0016408 Sechium edule HOM05D002857 ORTHO05D008347 1.0e-67 260.8 166 70.5
Lsat_1_v5_gn_1_103341 Lactuca sativa HOM05D002857 ORTHO05D008347 1.3e-67 260.4 191 68.6
Nitab4.5_0001105g0010 Nicotiana tabacum HOM05D002857 ORTHO05D008347 2.2e-67 259.6 157 75.2
MSTRG.27764 Avicennia marina HOM05D002857 ORTHO05D008347 6.5e-67 258.1 183 64.5
Solyc01g107020.4 Solanum lycopersicum HOM05D002857 ORTHO05D008347 8.4e-67 257.7 202 60.9
PSO541G0380 Papaver somniferum HOM05D002857 ORTHO05D008347 1.4e-66 256.9 226 57.1
CAN.G606.59 Capsicum annuum HOM05D002857 ORTHO05D008347 1.9e-66 256.5 212 59.4
Migut.O00567 Erythranthe guttata HOM05D002857 ORTHO05D008347 1.9e-66 256.5 166 67.5
Rhsim11G0151500 Rhododendron simsii HOM05D002133 ORTHO05D008347 2.5e-66 256.1 158 74.7
Sopen01g049290 Solanum pennellii HOM05D002857 ORTHO05D008347 5.5e-66 255.0 161 70.8
Cc02_g19860 Coffea canephora HOM05D002857 ORTHO05D008347 7.1e-66 254.6 161 71.4
Migut.N01136 Erythranthe guttata HOM05D002857 ORTHO05D008347 7.1e-66 254.6 166 67.5
Peaxi162Scf00016g02839 Petunia axillaris HOM05D002857 ORTHO05D008347 7.1e-66 254.6 161 70.8
Ca_21777_v3 Cicer arietinum L. HOM05D002857 ORTHO05D008347 1.6e-65 253.4 163 71.8
EL10Ac9g22202 Beta vulgaris HOM05D002857 ORTHO05D008347 3.5e-65 252.3 194 63.4
Rhsim11G0152900 Rhododendron simsii HOM05D002133 ORTHO05D008347 4.6e-65 251.9 216 60.2
Hund00691 Selenicereus undatus HOM05D002857 ORTHO05D008347 7.9e-65 251.1 212 57.5
VMungo1215G1881 Vigna mungo HOM05D002857 ORTHO05D008347 7.9e-65 251.1 157 73.2
PSO675G0546 Papaver somniferum HOM05D002857 ORTHO05D008347 1.0e-64 250.8 226 56.6
SGA_v2.0_scaffold219G42527 Striga asiatica HOM05D002857 ORTHO05D008347 5.1e-64 248.4 225 54.7
AUR62027003 Chenopodium quinoa HOM05D002857 ORTHO05D008347 1.9e-63 246.5 161 70.8
PGSC0003DMG400025744 Solanum tuberosum HOM05D002857 ORTHO05D008347 1.9e-63 246.5 185 64.3
unitig_749.g13509 Utricularia gibba HOM05D002857 ORTHO05D008347 1.9e-63 246.5 186 63.4
CDE04G2041 Ceratophyllum demersum HOM05D002857 ORTHO05D008347 9.0e-61 237.7 165 67.9
Nn3g19581 Nelumbo nucifera HOM05D002857 ORTHO05D008347 1.3e-59 233.8 162 69.1
SalBow3G3786 Salvia bowleyana HOM05D002857 ORTHO05D008347 1.3e-59 233.8 215 55.3
Thhalv10011799m.g Eutrema salsugineum HOM05D002857 ORTHO05D008347 2.5e-55 219.5 188 53.2
THA.LOC104803442 Tarenaya hassleriana HOM05D002857 ORTHO05D008347 2.5e-55 219.5 166 63.9
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 7.4e-55 218.0 184 55.4
HPP92_003268 Vanilla planifolia HOM05D002857 ORTHO05D008347 7.4e-55 218.0 165 61.8
Aa31LG10G4120 Aethionema arabicum HOM05D002857 ORTHO05D008347 9.7e-55 217.6 164 60.4
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 9.7e-55 217.6 197 53.8
A06p03450 Brassica napus HOM05D002857 ORTHO05D008347 1.3e-54 217.2 192 53.6
C06p04760 Brassica napus HOM05D002857 ORTHO05D008347 2.2e-54 216.5 184 54.9
AL1G57550 Arabidopsis lyrata HOM05D002857 ORTHO05D008347 6.3e-54 214.9 157 61.1
BolC6t35606H Brassica oleracea HOM05D002857 ORTHO05D008347 1.4e-53 213.8 161 59.6
BraA06t23553Z Brassica rapa HOM05D002857 ORTHO05D008347 1.4e-53 213.8 161 59.6
Carub.0001s3918 Capsella rubella HOM05D002857 ORTHO05D008347 2.4e-53 213.0 161 59.0
Ah.01g006980 Amaranthus hybridus HOM05D002857 ORTHO05D008347 5.3e-53 211.8 137 71.5
SpUn0137_0020 Schrenkiella parvula HOM05D002857 ORTHO05D008347 2.0e-52 209.9 184 53.3
Os10g0350800 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D008347 2.2e-51 206.5 174 57.5
Ciclev10007042m.g Citrus clementina HOM05D002857 ORTHO05D008347 2.9e-51 206.1 145 68.3
Zm00001eb019030 Zea mays HOM05D002857 ORTHO05D008347 9.4e-50 201.1 167 58.1
ECA234G2213 Erigeron canadensis HOM05D002857 ORTHO05D008347 2.1e-49 199.9 125 72.0
SMO361G0227 Selaginella moellendorffii HOM05D002857 ORTHO05D008347 3.7e-46 189.1 171 51.5
Glyma.05G021200 Glycine max HOM05D002857 ORTHO05D008347 1.2e-41 174.1 112 73.2
Pp3c5_10320 Physcomitrium patens HOM05D002857 ORTHO05D008347 1.4e-40 170.6 162 52.5
AagrBONN_evm.TU.Sc2ySwM_228.4585 Anthoceros agrestis HOM05D002857 ORTHO05D008347 1.8e-40 170.2 154 55.2
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 3.0e-40 169.5 170 54.1
arahy.Tifrunner.gnm1.ann1.AK2UKD Arachis hypogaea HOM05D002857 ORTHO05D008347 6.7e-40 168.3 128 63.3
Oeu010448.1 Olea europaea HOM05D002857 ORTHO05D008347 1.1e-39 167.5 112 70.5
arahy.Tifrunner.gnm1.ann1.9CW0PF Arachis hypogaea HOM05D002857 ORTHO05D008347 1.5e-39 167.2 156 57.1
Ciclev10006219m.g Citrus clementina HOM05D002857 ORTHO05D008347 4.8e-38 162.2 106 74.5
arahy.Tifrunner.gnm1.ann1.JJ1SBB Arachis hypogaea HOM05D002857 ORTHO05D008347 5.3e-37 158.7 111 66.7
Mapoly0121s0028 Marchantia polymorpha HOM05D002857 ORTHO05D008347 3.5e-36 156.0 159 48.4
Rhsim11G0151300 Rhododendron simsii HOM05D002133 ORTHO05D002256 5.0e-35 152.1 90 76.7
CBR_g3894 Chara braunii HOM05D002857 ORTHO05D008347 7.5e-31 138.3 127 52.8
SEGI_03434 Sequoiadendron giganteum HOM05D002857 ORTHO05D008347 6.5e-27 125.2 123 49.6
MCO12G139 Micromonas commoda HOM05D002857 ORTHO05D008347 7.5e-23 111.7 161 39.1
Cre05.g247150 Chlamydomonas reinhardtii HOM05D002857 ORTHO05D008347 1.8e-21 107.1 200 30.5
QL11p030572 Quercus lobata HOM05D002857 ORTHO05D008347 5.9e-20 102.1 54 81.5
PRCOL_00006372 Prasinoderma coloniale HOM05D002857 ORTHO05D008347 1.1e-18 97.8 164 36.6
Cfa021534 Carpinus fangiana HOM05D002857 ORTHO05D008347 2.8e-17 93.2 54 77.8
AUR62030843 Chenopodium quinoa HOM05D002857 ORTHO05D008347 8.9e-16 88.2 54 72.2
Sc18g0007410 Simmondsia chinensis HOM05D002857 ORTHO05D008347 3.2e-13 79.7 54 63.0
Sc18g0007450 Simmondsia chinensis HOM05D002857 ORTHO05D008347 3.2e-13 79.7 54 63.0
CARHR040040 Cardamine hirsuta HOM05D002857 ORTHO05D008347 6.6e-11 72.0 67 50.7
Nn5g29163 Nelumbo nucifera HOM05D002857 ORTHO05D008347 1.2e-09 67.8 38 78.9


User provided reference genes

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