Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 7.7e-82 307.0 144 100.0
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 6.1e-71 270.8 145 87.6
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.4e-67 258.8 147 82.3
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 3.1e-67 258.5 147 82.3
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 9.1e-67 256.9 145 82.1
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 3.5e-66 255.0 142 83.1
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.0e-65 253.4 145 81.4
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 1.0e-65 253.4 147 82.3
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 1.5e-64 249.6 146 81.5
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 2.5e-64 248.8 144 79.9
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 4.2e-64 248.1 120 94.2
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 4.2e-64 248.1 144 79.2
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 1.6e-63 246.1 146 80.1
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 3.6e-63 245.0 145 81.4
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 1.0e-62 243.4 144 79.2
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 1.0e-62 243.4 142 80.3
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 4.0e-62 241.5 152 78.3
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 8.9e-62 240.4 140 80.0
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 1.5e-61 239.6 144 77.8
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 1.5e-61 239.6 144 77.8
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 3.4e-61 238.4 142 75.4
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 3.4e-61 238.4 136 82.4
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 3.4e-61 238.4 145 77.2
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 4.4e-61 238.0 139 79.1
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 7.5e-61 237.3 148 75.7
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 7.5e-61 237.3 121 87.6
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 2.2e-60 235.7 138 77.5
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 3.7e-60 235.0 144 75.0
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 3.7e-60 235.0 146 75.3
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 4.9e-60 234.6 138 79.0
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 1.1e-59 233.4 139 77.0
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 1.8e-59 232.6 148 75.0
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 3.1e-59 231.9 147 77.6
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 7.0e-59 230.7 126 80.2
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 9.2e-59 230.3 122 83.6
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 2.0e-58 229.2 118 83.9
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 2.0e-58 229.2 139 77.7
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 4.5e-58 228.0 142 76.8
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 7.8e-58 227.3 141 75.9
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 1.0e-57 226.9 126 78.6
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 1.0e-57 226.9 143 72.7
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 1.7e-57 226.1 143 74.1
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.3e-57 225.7 143 72.0
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 2.9e-57 225.3 137 75.9
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 2.9e-57 225.3 145 73.1
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 5.0e-57 224.6 143 72.7
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 5.0e-57 224.6 145 72.4
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 5.0e-57 224.6 134 73.9
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 6.6e-57 224.2 141 72.3
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 8.6e-57 223.8 143 71.3
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 1.1e-56 223.4 144 72.2
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.1e-56 223.4 145 71.0
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.5e-56 222.2 141 70.9
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 2.5e-56 222.2 139 72.7
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 5.6e-56 221.1 141 70.9
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 5.6e-56 221.1 120 79.2
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 9.5e-56 220.3 141 72.3
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 1.2e-55 219.9 123 81.3
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 3.6e-55 218.4 135 72.6
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 6.1e-55 217.6 139 71.2
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 1.8e-54 216.1 145 70.3
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 1.8e-54 216.1 139 70.5
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 4.0e-54 214.9 135 70.4
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 4.0e-54 214.9 140 70.7
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 6.8e-54 214.2 135 71.1
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 8.9e-54 213.8 143 69.2
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 8.9e-54 213.8 147 68.7
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 1.2e-53 213.4 119 80.7
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 1.5e-53 213.0 133 71.4
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 1.5e-53 213.0 133 71.4
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 1.5e-53 213.0 135 70.4
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 1.5e-53 213.0 133 71.4
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 2.6e-53 212.2 138 68.1
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 2.6e-53 212.2 145 70.3
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 3.4e-53 211.8 133 70.7
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 5.8e-53 211.1 146 69.9
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 7.5e-53 210.7 143 67.8
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 9.8e-53 210.3 135 68.9
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 9.8e-53 210.3 136 71.3
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 9.8e-53 210.3 141 68.8
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 2.2e-52 209.1 124 76.6
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 2.2e-52 209.1 135 69.6
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.2e-52 209.1 145 67.6
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 6.4e-52 207.6 147 66.7
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 8.3e-52 207.2 143 64.3
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 1.1e-51 206.8 137 70.8
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 2.4e-51 205.7 109 84.4
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 9.2e-51 203.8 128 70.3
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 1.2e-50 203.4 127 70.1
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 4.6e-50 201.4 148 63.5
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 4.6e-50 201.4 148 63.5
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 4.6e-50 201.4 163 60.7
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 7.8e-50 200.7 131 70.2
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.0e-49 200.3 137 68.6
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 3.9e-49 198.4 140 65.7
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 2.5e-48 195.7 140 65.0
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 9.5e-48 193.7 126 72.2
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 1.2e-47 193.4 145 60.7
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 2.8e-47 192.2 123 66.7
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.6e-45 185.7 140 67.9
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 4.7e-39 164.9 85 84.7
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 6.8e-38 161.0 143 59.4
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 3.2e-35 152.1 136 51.5
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.1e-34 149.4 82 80.5
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 1.7e-33 146.4 80 78.8
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 9.5e-32 140.6 117 53.8
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 5.2e-30 134.8 96 58.3
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 7.6e-29 131.0 92 62.0
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 1.3e-28 130.2 92 62.0
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 3.8e-28 128.6 133 49.6
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 4.9e-28 128.3 114 46.5
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 9.2e-27 124.0 74 73.0
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 1.2e-26 123.6 147 49.0
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 1.6e-26 123.2 144 49.3
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 1.9e-24 116.3 59 86.4
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 5.6e-24 114.8 89 53.9
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 3.6e-23 112.1 93 49.5
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 1.7e-20 103.2 93 50.5
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 1.4e-19 100.1 92 50.0
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 1.0e-17 94.0 99 41.4
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 1.1e-14 84.0 56 62.5
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 1.4e-14 83.6 67 56.7
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.4e-11 72.8 61 59.0
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 9.3e-11 70.9 70 45.7
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 3.5e-10 68.9 39 76.9
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.9e-09 65.5 67 53.7
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 8.7e-09 64.3 40 65.0
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 3.3e-08 62.4 55 56.4
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 5.6e-08 61.6 88 42.0
FAN15G0330 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.8e-06 56.6 41 51.2
GSVIVG01029385001 Vitis vinifera HOM05D005641 ORTHO05D007953 3.1e-06 55.8 32 71.9
Nitab4.5_0003335g0050 Nicotiana tabacum HOM05D002499 ORTHO05D002812 4.0e-06 55.5 61 34.4


User provided reference genes

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