Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 2.6e-65 251.9 129 100.0
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 2.0e-28 129.4 75 88.0
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 2.6e-28 129.0 75 86.7
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.1e-26 123.6 75 82.7
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 1.1e-26 123.6 75 82.7
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 1.4e-26 123.2 75 81.3
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.4e-26 123.2 75 81.3
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.4e-26 123.2 75 82.7
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 2.4e-26 122.5 75 81.3
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.4e-26 121.3 75 81.3
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 7.0e-26 120.9 75 80.0
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 1.2e-25 120.2 75 80.0
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 1.2e-25 120.2 75 78.7
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 1.6e-25 119.8 75 78.7
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 2.0e-25 119.4 75 76.0
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 2.0e-25 119.4 75 80.0
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.0e-25 119.4 75 77.3
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.0e-25 119.4 75 78.7
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.0e-25 119.4 114 58.8
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.0e-25 119.4 114 58.8
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.7e-25 119.0 75 80.0
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 2.7e-25 119.0 75 78.7
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 3.5e-25 118.6 75 76.0
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 3.5e-25 118.6 75 77.3
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 3.5e-25 118.6 75 76.0
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 3.5e-25 118.6 75 77.3
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 4.5e-25 118.2 75 76.0
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 4.5e-25 118.2 75 77.3
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 4.5e-25 118.2 75 76.0
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 4.5e-25 118.2 75 78.7
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 4.5e-25 118.2 114 59.6
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 4.5e-25 118.2 75 80.0
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 4.5e-25 118.2 75 80.0
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 5.9e-25 117.9 75 77.3
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 5.9e-25 117.9 75 77.3
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 5.9e-25 117.9 74 78.4
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 5.9e-25 117.9 75 78.7
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 5.9e-25 117.9 75 76.0
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 5.9e-25 117.9 75 77.3
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 5.9e-25 117.9 75 77.3
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 5.9e-25 117.9 75 74.7
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 7.8e-25 117.5 75 78.7
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 7.8e-25 117.5 75 74.7
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 7.8e-25 117.5 75 74.7
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 7.8e-25 117.5 75 77.3
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 7.8e-25 117.5 75 78.7
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 7.8e-25 117.5 75 74.7
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 1.0e-24 117.1 75 74.7
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.0e-24 117.1 75 77.3
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.0e-24 117.1 75 77.3
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.0e-24 117.1 75 76.0
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.0e-24 117.1 75 77.3
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 1.0e-24 117.1 75 76.0
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 1.3e-24 116.7 75 76.0
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 1.3e-24 116.7 74 75.7
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 1.3e-24 116.7 74 75.7
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 1.3e-24 116.7 74 75.7
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 1.3e-24 116.7 74 75.7
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.3e-24 116.7 75 76.0
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 1.3e-24 116.7 75 74.7
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 1.7e-24 116.3 75 72.0
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 1.7e-24 116.3 74 77.0
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.7e-24 116.3 74 74.3
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 1.7e-24 116.3 74 77.0
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 1.7e-24 116.3 74 77.0
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 1.7e-24 116.3 75 74.7
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 1.7e-24 116.3 75 77.3
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 1.7e-24 116.3 74 74.3
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 1.7e-24 116.3 75 77.3
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 1.7e-24 116.3 75 76.0
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.7e-24 116.3 75 77.3
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.7e-24 116.3 75 77.3
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 2.3e-24 115.9 74 77.0
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 2.3e-24 115.9 75 74.7
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 2.3e-24 115.9 75 74.7
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 2.9e-24 115.5 75 73.3
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 2.9e-24 115.5 75 78.7
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 2.9e-24 115.5 75 76.0
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 2.9e-24 115.5 74 75.7
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 2.9e-24 115.5 75 76.0
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 3.8e-24 115.2 74 75.7
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 5.0e-24 114.8 75 76.0
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 5.0e-24 114.8 75 76.0
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 5.0e-24 114.8 75 74.7
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 6.6e-24 114.4 114 57.0
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 6.6e-24 114.4 75 74.7
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 6.6e-24 114.4 75 73.3
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 6.6e-24 114.4 75 74.7
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 6.6e-24 114.4 75 73.3
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 6.6e-24 114.4 75 73.3
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 6.6e-24 114.4 75 74.7
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 8.6e-24 114.0 75 76.0
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 8.6e-24 114.0 75 72.0
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 8.6e-24 114.0 75 74.7
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 8.6e-24 114.0 75 76.0
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 8.6e-24 114.0 75 73.3
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 8.6e-24 114.0 75 73.3
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 8.6e-24 114.0 75 72.0
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 1.5e-23 113.2 75 73.3
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 1.9e-23 112.8 75 72.0
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 1.9e-23 112.8 75 70.7
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 1.9e-23 112.8 75 70.7
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 3.3e-23 112.1 100 62.0
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 3.3e-23 112.1 75 72.0
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 3.3e-23 112.1 75 72.0
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 3.3e-23 112.1 75 74.7
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 4.3e-23 111.7 75 70.7
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 5.6e-23 111.3 75 73.3
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 5.6e-23 111.3 74 75.7
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 5.6e-23 111.3 75 70.7
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 7.3e-23 110.9 75 70.7
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 9.5e-23 110.5 74 73.0
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 9.5e-23 110.5 74 73.0
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 1.2e-22 110.2 75 69.3
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 2.1e-22 109.4 74 67.6
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 4.7e-22 108.2 75 66.7
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 4.7e-22 108.2 75 72.0
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 6.1e-22 107.8 75 68.0
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 8.0e-22 107.5 75 69.3
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 8.0e-22 107.5 69 72.5
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 8.0e-22 107.5 75 68.0
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 1.4e-21 106.7 75 72.0
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 1.8e-21 106.3 77 70.1
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 8.9e-21 104.0 75 66.7
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 1.2e-20 103.6 75 66.7
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 3.4e-20 102.1 75 61.3
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 4.4e-20 101.7 75 64.0
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 3.7e-19 98.6 100 53.0
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 8.3e-19 97.4 75 60.0
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 3.2e-18 95.5 75 60.0
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 9.2e-18 94.0 75 57.3
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 9.2e-18 94.0 61 77.0
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 1.6e-17 93.2 58 79.3
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 1.6e-17 93.2 132 43.9
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 2.7e-17 92.4 59 76.3
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 4.6e-17 91.7 74 60.8
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 7.8e-17 90.9 70 68.6
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 2.3e-16 89.4 58 74.1
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 2.3e-16 89.4 86 58.1
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 3.0e-16 89.0 74 56.8
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.5e-15 86.7 52 78.8
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 3.3e-15 85.5 75 57.3
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 3.3e-15 85.5 75 57.3
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 8.0e-14 80.9 86 58.1
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 2.6e-12 75.9 75 60.0
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 7.5e-12 74.3 76 47.4
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 6.4e-11 71.2 75 56.0
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 2.4e-10 69.3 75 54.7
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 2.3e-08 62.8 37 70.3
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.9e-08 62.0 111 36.9
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 8.6e-08 60.8 37 67.6
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 4.3e-07 58.5 95 36.8
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 5.6e-07 58.2 39 76.9
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.6e-06 56.6 61 55.7
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 2.1e-06 56.2 75 38.7
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 8.1e-06 54.3 41 58.5


User provided reference genes

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