Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1091300 Malus domestica HOM05D000364 ORTHO05D000235 2.8e-48 194.9 94 100.0
MD10G1098900 Malus domestica HOM05D000364 ORTHO05D000235 2.2e-13 79.0 52 75.0
Prupe.8G136800 Prunus persica HOM05D000364 ORTHO05D000235 1.4e-10 69.7 38 76.3
CDE02G2403 Ceratophyllum demersum HOM05D000364 ORTHO05D000235 8.8e-10 67.0 40 70.0
ATR0205G021 Amborella trichopoda HOM05D000364 ORTHO05D000235 1.1e-09 66.6 59 54.2
COL.COLO4_32577 Corchorus olitorius HOM05D000364 ORTHO05D000235 1.1e-09 66.6 42 69.0
FAN27G0718 Fragaria x ananassa HOM05D000364 ORTHO05D000235 1.5e-09 66.2 77 48.1
Lj9C325G1 Lonicera japonica HOM05D000364 ORTHO05D000235 1.5e-09 66.2 41 70.7
CDE04G0891 Ceratophyllum demersum HOM05D000364 ORTHO05D000235 2.0e-09 65.9 40 65.0
CSS0005359 Camellia sinensis var. sinensis HOM05D000364 ORTHO05D000235 2.5e-09 65.5 41 70.7
CSS0031589 Camellia sinensis var. sinensis HOM05D000364 ORTHO05D000235 2.5e-09 65.5 41 70.7
FvH4_2g04900 Fragaria vesca HOM05D000364 ORTHO05D000235 3.3e-09 65.1 50 60.0
FAN20G2525 Fragaria x ananassa HOM05D000364 ORTHO05D000235 3.3e-09 65.1 50 60.0
RcHm_v2.0_Chr6g0254731 Rosa chinensis HOM05D000364 ORTHO05D000235 3.3e-09 65.1 49 71.4
CANSAT25G1218 Cannabis sativa HOM05D000364 ORTHO05D000235 4.3e-09 64.7 39 66.7
CANSAT25G3174 Cannabis sativa HOM05D000364 ORTHO05D000235 4.3e-09 64.7 39 66.7
Ciclev10028922m.g Citrus clementina HOM05D000364 ORTHO05D000235 9.7e-09 63.5 46 58.7
FAN15G1292 Fragaria x ananassa HOM05D000364 ORTHO05D000235 1.3e-08 63.2 77 45.5
FAN24G0351 Fragaria x ananassa HOM05D000364 ORTHO05D000235 1.3e-08 63.2 50 58.0
QL11p033020 Quercus lobata HOM05D000364 ORTHO05D000235 1.3e-08 63.2 72 50.0
Lalb_Chr02g0145241 Lupinus albus HOM05D000364 ORTHO05D000235 1.7e-08 62.8 69 47.8
Thecc.02G110200 Theobroma cacao HOM05D000364 ORTHO05D000235 1.7e-08 62.8 36 72.2
Dinv15772 Davidia involucrata HOM05D000364 ORTHO05D000235 2.2e-08 62.4 43 58.1
Oeu044273.1 Olea europaea HOM05D000364 ORTHO05D000235 3.7e-08 61.6 36 69.4
Atru.chr5.2473 Acer truncatum HOM05D000364 ORTHO05D000235 4.8e-08 61.2 39 64.1
Aa31LG8G6250 Aethionema arabicum HOM05D000364 ORTHO05D000235 4.8e-08 61.2 56 53.6
Cc02_g19350 Coffea canephora HOM05D000364 ORTHO05D000235 4.8e-08 61.2 53 52.8
TAR628G1537 Trochodendron aralioides HOM05D000364 ORTHO05D000235 6.3e-08 60.8 33 78.8
DCAR_029089 Daucus carota HOM05D000364 ORTHO05D000235 8.2e-08 60.5 47 57.4
Duzib248G0059 Durio zibethinus HOM05D000364 ORTHO05D000235 8.2e-08 60.5 36 69.4
Lalb_Chr06g0165411 Lupinus albus HOM05D000364 ORTHO05D000235 1.1e-07 60.1 67 46.3
MBI16_g17768_MAGBIO Magnolia biondii HOM05D000364 ORTHO05D000235 1.1e-07 60.1 33 75.8
Psat6g217320 Pisum sativum HOM05D000364 ORTHO05D000235 1.1e-07 60.1 52 57.7
GSVIVG01037903001 Vitis vinifera HOM05D000364 ORTHO05D000235 1.1e-07 60.1 36 69.4
Nn5g30437 Nelumbo nucifera HOM05D000364 ORTHO05D000235 1.8e-07 59.3 36 69.4
CiPaw.06G168800 Carya illinoinensis HOM05D000364 ORTHO05D000235 2.4e-07 58.9 34 73.5
Thhalv10021324m.g Eutrema salsugineum HOM05D000364 ORTHO05D000235 2.4e-07 58.9 52 57.7
HanXRQChr17g0570561 Helianthus annuus HOM05D000364 ORTHO05D000235 2.4e-07 58.9 53 49.1
PSO675G4463 Papaver somniferum HOM05D000364 ORTHO05D000235 2.4e-07 58.9 37 73.0
THA.LOC104825377 Tarenaya hassleriana HOM05D000364 ORTHO05D000235 3.1e-07 58.5 37 64.9
Cfa004600 Carpinus fangiana HOM05D000364 ORTHO05D000235 4.1e-07 58.2 35 71.4
SEGI_12476 Sequoiadendron giganteum HOM05D000364 ORTHO05D000235 4.1e-07 58.2 37 62.2
PGR042G2510 Punica granatum HOM05D000364 ORTHO05D000235 5.3e-07 57.8 51 54.9
Carub.0003s1930 Capsella rubella HOM05D000364 ORTHO05D000235 6.9e-07 57.4 39 61.5
Ca_11063_v3 Cicer arietinum L. HOM05D000364 ORTHO05D000235 6.9e-07 57.4 39 64.1
Rhsim11G0158500 Rhododendron simsii HOM05D000364 ORTHO05D000235 6.9e-07 57.4 43 55.8
CARHR094920 Cardamine hirsuta HOM05D000364 ORTHO05D000235 9.1e-07 57.0 66 43.9
Medtr1g107185 Medicago truncatula HOM05D000364 ORTHO05D000235 9.1e-07 57.0 36 63.9
AT3G19500 Arabidopsis thaliana HOM05D000364 ORTHO05D000235 1.2e-06 56.6 35 68.6
arahy.Tifrunner.gnm1.ann1.DWN0H8 Arachis hypogaea HOM05D000364 ORTHO05D000235 1.2e-06 56.6 30 73.3
arahy.Tifrunner.gnm1.ann1.M0X3QF Arachis hypogaea HOM05D000364 ORTHO05D000235 1.2e-06 56.6 30 73.3
MSTRG.10620 Avicennia marina HOM05D000364 ORTHO05D000235 1.2e-06 56.6 71 40.8
Mapoly0055s0052 Marchantia polymorpha HOM05D000364 ORTHO05D000235 1.2e-06 56.6 33 69.7
MSTRG.5335 Avicennia marina HOM05D000364 ORTHO05D000235 1.5e-06 56.2 39 66.7
A05p30120 Brassica napus HOM05D000364 ORTHO05D000235 1.5e-06 56.2 39 64.1
BraA05t21852Z Brassica rapa HOM05D000364 ORTHO05D000235 1.5e-06 56.2 39 64.1
CsaV3_7G008090 Cucumis sativus L. HOM05D000364 ORTHO05D000235 1.5e-06 56.2 57 49.1
PSO541G2086 Papaver somniferum HOM05D000364 ORTHO05D000235 2.0e-06 55.8 31 71.0
SalBow3G3583 Salvia bowleyana HOM05D000364 ORTHO05D000235 2.0e-06 55.8 36 66.7
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 2.6e-06 55.5 53 45.3
arahy.Tifrunner.gnm1.ann1.5S0LFQ Arachis hypogaea HOM05D000364 ORTHO05D000235 2.6e-06 55.5 41 53.7
CiPaw.01G234700 Carya illinoinensis HOM05D000364 ORTHO05D000235 2.6e-06 55.5 44 52.3
Lsat_1_v5_gn_7_85821 Lactuca sativa HOM05D000364 ORTHO05D000235 2.6e-06 55.5 36 63.9
Manes.10G076000 Manihot esculenta HOM05D000364 ORTHO05D000235 2.6e-06 55.5 29 72.4
Sp3g17550 Schrenkiella parvula HOM05D000364 ORTHO05D000235 2.6e-06 55.5 41 61.0
SMO232G0040 Selaginella moellendorffii HOM05D000364 ORTHO05D000235 2.6e-06 55.5 51 49.0
Actinidia17488 Actinidia chinensis HOM05D000364 ORTHO05D000235 3.4e-06 55.1 42 64.3
AL3G32900 Arabidopsis lyrata HOM05D000364 ORTHO05D000235 3.4e-06 55.1 35 65.7
arahy.Tifrunner.gnm1.ann1.E736SD Arachis hypogaea HOM05D000364 ORTHO05D000235 3.4e-06 55.1 41 53.7
Cpa.g.sc106.107 Carica papaya HOM05D000364 ORTHO05D000235 3.4e-06 55.1 34 67.6
MELO3C018496.2 Cucumis melo HOM05D000364 ORTHO05D000235 3.4e-06 55.1 57 47.4
Gohir.A13G044200 Gossypium hirsutum HOM05D000364 ORTHO05D000235 3.4e-06 55.1 39 61.5
Gohir.D13G043300 Gossypium hirsutum HOM05D000364 ORTHO05D000235 3.4e-06 55.1 39 61.5
Gorai.013G048000 Gossypium raimondii HOM05D000364 ORTHO05D000235 3.4e-06 55.1 39 61.5
Hma1.2p1_2341F.1_g320310 Hydrangea macrophylla HOM05D000364 ORTHO05D000235 3.4e-06 55.1 41 56.1
Sed0026711 Sechium edule HOM05D000364 ORTHO05D000235 3.4e-06 55.1 37 56.8
BcaB06g26009 Brassica carinata HOM05D000364 ORTHO05D000235 4.5e-06 54.7 39 61.5
BcaC05g28471 Brassica carinata HOM05D000364 ORTHO05D000235 4.5e-06 54.7 39 61.5
C05p45550 Brassica napus HOM05D000364 ORTHO05D000235 4.5e-06 54.7 39 61.5
BolC5t33280H Brassica oleracea HOM05D000364 ORTHO05D000235 4.5e-06 54.7 39 61.5
Hma1.2p1_1518F.1_g288440 Hydrangea macrophylla HOM05D000364 ORTHO05D000235 4.5e-06 54.7 41 56.1
MBI08_g33173_MAGBIO Magnolia biondii HOM05D000364 ORTHO05D000235 4.5e-06 54.7 33 66.7
Phvul.007G041200 Phaseolus vulgaris HOM05D000364 ORTHO05D000235 4.5e-06 54.7 44 54.5
SalBow7G1832 Salvia bowleyana HOM05D000364 ORTHO05D000235 4.5e-06 54.7 53 49.1
TPR.G19067 Trifolium pratense HOM05D000364 ORTHO05D000235 4.5e-06 54.7 39 56.4
Aqoxy6G02841 Aquilegia oxysepala HOM05D000364 ORTHO05D000235 5.9e-06 54.3 40 60.0
BraA05t20314Z Brassica rapa HOM05D000364 ORTHO05D000235 5.9e-06 54.3 48 50.0
CAN.G606.13 Capsicum annuum HOM05D000364 ORTHO05D000235 5.9e-06 54.3 38 65.8
Lalb_Chr16g0384441 Lupinus albus HOM05D000364 ORTHO05D000235 5.9e-06 54.3 53 47.2
SMO146G0224 Selaginella moellendorffii HOM05D000364 ORTHO05D000235 5.9e-06 54.3 31 71.0
SEGI_13027 Sequoiadendron giganteum HOM05D000364 ORTHO05D000235 5.9e-06 54.3 35 60.0
SEGI_33200 Sequoiadendron giganteum HOM05D000364 ORTHO05D000235 5.9e-06 54.3 40 55.0
MSTRG.22658 Avicennia marina HOM05D000364 ORTHO05D000235 7.7e-06 53.9 47 53.2
Glyma.08G203600 Glycine max HOM05D000364 ORTHO05D000235 7.7e-06 53.9 31 67.7
Potri.001G185900 Populus trichocarpa HOM05D000364 ORTHO05D000235 7.7e-06 53.9 31 67.7
SalBow2G0553 Salvia bowleyana HOM05D000364 ORTHO05D000235 7.7e-06 53.9 45 55.6
TAR625G0218 Trochodendron aralioides HOM05D000364 ORTHO05D000235 7.7e-06 53.9 38 57.9


User provided reference genes

Program Settings