Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1086500 Malus domestica HOM05D001177 ORTHO05D007091 2.9e-31 137.9 68 100.0
MD17G1018600 Malus domestica HOM05D001177 ORTHO05D007091 9.4e-14 79.7 47 80.9
MD09G1017800 Malus domestica HOM05D001177 ORTHO05D007091 1.4e-12 75.9 47 80.9
arahy.Tifrunner.gnm1.ann1.Q0SVNI Arachis hypogaea HOM05D001177 ORTHO05D007091 2.6e-11 71.6 46 71.7
arahy.Tifrunner.gnm1.ann1.R689L2 Arachis hypogaea HOM05D001177 ORTHO05D007091 2.6e-11 71.6 46 71.7
RcHm_v2.0_Chr2g0174111 Rosa chinensis HOM05D001177 ORTHO05D007091 9.8e-11 69.7 46 76.1
Prupe.3G299100 Prunus persica HOM05D001177 ORTHO05D001507 6.3e-10 67.0 47 72.3
Dinv00599 Davidia involucrata HOM05D001177 ORTHO05D007091 1.8e-09 65.5 47 63.8
Dinv33388 Davidia involucrata HOM05D001177 ORTHO05D007091 1.8e-09 65.5 47 63.8
Manes.01G014100 Manihot esculenta HOM05D001177 ORTHO05D007091 5.4e-09 63.9 47 63.8
PGR083G2095 Punica granatum HOM05D001177 ORTHO05D007091 9.1e-09 63.2 47 63.8
Actinidia36159 Actinidia chinensis HOM05D001177 ORTHO05D007091 1.2e-08 62.8 47 63.8
FAN02G2178 Fragaria x ananassa HOM05D001177 ORTHO05D007091 1.2e-08 62.8 47 70.2
Rhsim10G0011600 Rhododendron simsii HOM05D001177 ORTHO05D007091 1.2e-08 62.8 47 61.7
Sabra16G0217700 Salix brachista HOM05D001177 ORTHO05D007091 1.2e-08 62.8 47 59.6
Lj1g0014156 Lotus japonicus HOM05D001177 ORTHO05D007091 2.0e-08 62.0 46 60.9
Manes.01G049405 Manihot esculenta HOM05D001177 ORTHO05D007091 2.0e-08 62.0 46 63.0
Potri.001G336832 Populus trichocarpa HOM05D001177 ORTHO05D007091 2.7e-08 61.6 47 59.6
Sed0005287 Sechium edule HOM05D001177 ORTHO05D007091 3.5e-08 61.2 46 58.7
Migut.H00054 Erythranthe guttata HOM05D001177 ORTHO05D007091 4.5e-08 60.8 48 64.6
CANSAT64G1259 Cannabis sativa HOM05D001177 ORTHO05D007091 5.9e-08 60.5 47 61.7
Glyma.16G063400 Glycine max HOM05D001177 ORTHO05D007091 5.9e-08 60.5 46 60.9
Cpa.g.sc1097.2 Carica papaya HOM05D001177 ORTHO05D007091 7.7e-08 60.1 47 59.6
CiPaw.04G032700 Carya illinoinensis HOM05D001177 ORTHO05D007091 7.7e-08 60.1 47 59.6
Eucgr.I01697 Eucalyptus grandis HOM05D001177 ORTHO05D001507 7.7e-08 60.1 46 60.9
QL02p073037 Quercus lobata HOM05D001177 ORTHO05D007091 1.3e-07 59.3 47 61.7
QL02p073106 Quercus lobata HOM05D001177 ORTHO05D007091 1.3e-07 59.3 47 61.7
GSVIVG01003965001 Vitis vinifera HOM05D001177 ORTHO05D001507 1.3e-07 59.3 47 61.7
Haze_14808 Corylus avellana HOM05D001177 ORTHO05D007091 2.3e-07 58.5 47 59.6
Manes.S095224 Manihot esculenta HOM05D001177 ORTHO05D007091 2.3e-07 58.5 44 61.4
Thecc.04G027000 Theobroma cacao HOM05D001177 ORTHO05D007091 2.3e-07 58.5 47 57.4
Ca_06569_v3 Cicer arietinum L. HOM05D001177 ORTHO05D007091 2.9e-07 58.2 46 58.7
ClCG05G013200 Citrullus lanatus HOM05D001177 ORTHO05D007091 2.9e-07 58.2 46 60.9
COL.COLO4_29271 Corchorus olitorius HOM05D001177 ORTHO05D007091 2.9e-07 58.2 47 57.4
CsaV3_3G027350 Cucumis sativus L. HOM05D001177 ORTHO05D007091 2.9e-07 58.2 46 60.9
vmacro05919 Vaccinium macrocarpon HOM05D001177 ORTHO05D007091 2.9e-07 58.2 47 59.6
Phvul.008G148200 Phaseolus vulgaris HOM05D001177 ORTHO05D007091 3.8e-07 57.8 41 63.4
TPR.G9071 Trifolium pratense HOM05D001177 ORTHO05D007091 3.8e-07 57.8 46 58.7
Lsat_1_v5_gn_4_183800 Lactuca sativa HOM05D001177 ORTHO05D007091 5.0e-07 57.4 47 61.7
Cc08_g11710 Coffea canephora HOM05D001177 ORTHO05D007091 8.6e-07 56.6 48 58.3
Gohir.A11G065300 Gossypium hirsutum HOM05D001177 ORTHO05D007091 8.6e-07 56.6 47 55.3
Oeu048591.1 Olea europaea HOM05D001177 ORTHO05D007091 8.6e-07 56.6 45 60.0
Psat3g169040 Pisum sativum HOM05D001177 ORTHO05D007091 8.6e-07 56.6 46 56.5
Sed0019906 Sechium edule HOM05D001177 ORTHO05D007091 1.1e-06 56.2 47 57.4
Atru.chr6.2479 Acer truncatum HOM05D001177 ORTHO05D007091 1.5e-06 55.8 47 53.2
Ciclev10017544m.g Citrus clementina HOM05D001177 ORTHO05D001507 1.5e-06 55.8 47 55.3
Duzib147G1186 Durio zibethinus HOM05D001177 ORTHO05D007091 1.5e-06 55.8 45 60.0
Lalb_Chr14g0363031 Lupinus albus HOM05D001177 ORTHO05D007091 1.5e-06 55.8 46 56.5
Glyma.19G082000 Glycine max HOM05D001177 ORTHO05D007091 1.9e-06 55.5 45 64.4
Gorai.007G074400 Gossypium raimondii HOM05D001177 ORTHO05D007091 1.9e-06 55.5 47 57.4
Lju41A46T90 Lonicera japonica HOM05D001177 ORTHO05D007091 3.3e-06 54.7 48 58.3
SGA_v2.0_scaffold135G34937 Striga asiatica HOM05D001177 ORTHO05D007091 3.3e-06 54.7 48 56.2
Gohir.D11G069600 Gossypium hirsutum HOM05D001177 ORTHO05D007091 4.2e-06 54.3 47 57.4
Ah.02g130620 Amaranthus hybridus HOM05D001177 ORTHO05D007091 5.5e-06 53.9 47 53.2
Duzib187G1086 Durio zibethinus HOM05D001177 ORTHO05D007091 5.5e-06 53.9 47 53.2
Peaxi162Scf00420g00254 Petunia axillaris HOM05D001177 ORTHO05D007091 5.5e-06 53.9 49 61.2
Nitab4.5_0001031g0080 Nicotiana tabacum HOM05D001177 ORTHO05D007091 7.2e-06 53.5 48 60.4
Nitab4.5_0001863g0200 Nicotiana tabacum HOM05D001177 ORTHO05D007091 7.2e-06 53.5 48 60.4
Solyc02g093760.4 Solanum lycopersicum HOM05D001177 ORTHO05D007091 9.5e-06 53.1 48 58.3
Sopen02g038400 Solanum pennellii HOM05D001177 ORTHO05D007091 9.5e-06 53.1 48 58.3


User provided reference genes

Program Settings