Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1080500 Malus domestica HOM05D006253 ORTHO05D007666 2.3e-97 359.0 194 100.0
Prupe.8G124200 Prunus persica HOM05D006253 ORTHO05D007666 1.6e-82 309.7 173 95.4
FvH4_2g06110 Fragaria vesca HOM05D006253 ORTHO05D007666 9.1e-78 293.9 173 89.6
FAN24G2487 Fragaria x ananassa HOM05D006253 ORTHO05D007666 9.1e-78 293.9 173 89.6
RcHm_v2.0_Chr6g0257111 Rosa chinensis HOM05D006253 ORTHO05D007666 1.2e-77 293.5 173 89.6
FAN27G3246 Fragaria x ananassa HOM05D006253 ORTHO05D007666 2.7e-74 282.3 179 86.0
Gohir.A01G006900 Gossypium hirsutum HOM05D006253 ORTHO05D007666 2.3e-73 279.3 173 85.0
Gorai.002G008000 Gossypium raimondii HOM05D006253 ORTHO05D007666 4.0e-73 278.5 173 85.0
Thecc.02G100600 Theobroma cacao HOM05D006253 ORTHO05D007666 5.2e-73 278.1 173 84.4
Gohir.D01G007000 Gossypium hirsutum HOM05D006253 ORTHO05D007666 9.7e-72 273.9 173 83.8
Nn5g30328 Nelumbo nucifera HOM05D006253 ORTHO05D007666 4.8e-71 271.6 173 82.7
QL11p035967 Quercus lobata HOM05D006253 ORTHO05D007666 4.8e-71 271.6 173 83.2
COL.COLO4_32658 Corchorus olitorius HOM05D006253 ORTHO05D007666 6.3e-71 271.2 173 82.7
Lj5C209T13 Lonicera japonica HOM05D006253 ORTHO05D007666 1.8e-70 269.6 173 83.8
TAR376G0695 Trochodendron aralioides HOM05D006253 ORTHO05D007666 2.4e-70 269.2 173 82.1
CANSAT25G0326 Cannabis sativa HOM05D006253 ORTHO05D007666 7.0e-70 267.7 173 82.7
Manes.01G064000 Manihot esculenta HOM05D006253 ORTHO05D007666 7.0e-70 267.7 173 80.9
CiPaw.05G006400 Carya illinoinensis HOM05D006253 ORTHO05D007666 1.6e-69 266.5 173 79.8
Ciclev10029390m.g Citrus clementina HOM05D006253 ORTHO05D007666 1.6e-69 266.5 174 82.2
Potri.004G141400 Populus trichocarpa HOM05D006253 ORTHO05D007666 2.0e-69 266.2 174 80.5
GSVIVG01031749001 Vitis vinifera HOM05D006253 ORTHO05D007666 4.5e-69 265.0 173 80.3
Actinidia12952 Actinidia chinensis HOM05D006253 ORTHO05D007666 5.9e-69 264.6 174 82.2
CANSAT35G0887 Cannabis sativa HOM05D006253 ORTHO05D007666 5.9e-69 264.6 173 82.1
Sc14g0002650 Simmondsia chinensis HOM05D006253 ORTHO05D007666 7.7e-69 264.2 173 78.6
Hma1.2p1_0370F.1_g137800 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 1.0e-68 263.8 173 81.5
Sabra04G0093200 Salix brachista HOM05D006253 ORTHO05D007666 1.7e-68 263.1 174 79.3
Sed0027718 Sechium edule HOM05D006253 ORTHO05D007666 2.2e-68 262.7 173 79.8
Rhsim03G0192100 Rhododendron simsii HOM05D006253 ORTHO05D007666 5.0e-68 261.5 173 79.8
MELO3C019508.2 Cucumis melo HOM05D006253 ORTHO05D007666 6.5e-68 261.2 173 80.3
VMungo1080G0444 Vigna mungo HOM05D006253 ORTHO05D007666 6.5e-68 261.2 173 78.0
arahy.Tifrunner.gnm1.ann1.ETD7FQ Arachis hypogaea HOM05D006253 ORTHO05D007666 1.5e-67 260.0 173 78.0
Glyma.04G194000 Glycine max HOM05D006253 ORTHO05D007666 2.5e-67 259.2 173 78.6
CsaV3_3G018580 Cucumis sativus L. HOM05D006253 ORTHO05D007666 7.2e-67 257.7 173 79.2
Lj6g0019810 Lotus japonicus HOM05D006253 ORTHO05D007666 1.2e-66 256.9 173 77.5
PGR142G1116 Punica granatum HOM05D006253 ORTHO05D007666 2.7e-66 255.8 174 79.3
arahy.Tifrunner.gnm1.ann1.AJN977 Arachis hypogaea HOM05D006253 ORTHO05D007666 1.0e-65 253.8 173 76.9
Phvul.005G182700 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 1.4e-65 253.4 173 75.1
TPR.G19178 Trifolium pratense HOM05D006253 ORTHO05D007666 1.4e-65 253.4 171 80.7
Ca_15796_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 5.2e-65 251.5 173 78.0
Ca_30406_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 5.2e-65 251.5 173 78.0
Rhsim05G0084000 Rhododendron simsii HOM05D006253 ORTHO05D007666 6.8e-65 251.1 182 75.3
SGA_v2.0_scaffold22G09667 Striga asiatica HOM05D006253 ORTHO05D007666 6.8e-65 251.1 173 77.5
CAN.G1041.15 Capsicum annuum HOM05D006253 ORTHO05D007666 1.2e-64 250.4 173 75.1
Lsat_1_v5_gn_5_112681 Lactuca sativa HOM05D006253 ORTHO05D007666 1.2e-64 250.4 170 75.9
Lalb_Chr25g0286231 Lupinus albus HOM05D006253 ORTHO05D007666 1.2e-64 250.4 173 73.4
Sopen01g050480 Solanum pennellii HOM05D006253 ORTHO05D007666 1.2e-64 250.4 173 75.7
TWI79G0152 Tripterygium wilfordii HOM05D006253 ORTHO05D007666 1.2e-64 250.4 174 76.4
PGSC0003DMG400025894 Solanum tuberosum HOM05D006253 ORTHO05D007666 1.5e-64 250.0 173 75.7
HanXRQChr16g0501301 Helianthus annuus HOM05D006253 ORTHO05D007666 2.6e-64 249.2 173 74.6
THA.LOC104807358 Tarenaya hassleriana HOM05D006253 ORTHO05D007666 2.6e-64 249.2 174 75.3
TPR.G19494 Trifolium pratense HOM05D006253 ORTHO05D007666 2.6e-64 249.2 170 80.6
Eucgr.I01155 Eucalyptus grandis HOM05D006253 ORTHO05D007666 4.4e-64 248.4 174 77.6
arahy.Tifrunner.gnm1.ann1.5N1458 Arachis hypogaea HOM05D006253 ORTHO05D007666 1.3e-63 246.9 194 70.1
ECA234G4670 Erigeron canadensis HOM05D006253 ORTHO05D007666 8.3e-63 244.2 173 73.4
Oeu010588.1 Olea europaea HOM05D006253 ORTHO05D007666 1.4e-62 243.4 173 73.4
PSO782G1871 Papaver somniferum HOM05D006253 ORTHO05D007666 7.0e-62 241.1 169 75.7
Sp7g32200 Schrenkiella parvula HOM05D006253 ORTHO05D007666 1.6e-61 240.0 174 75.9
EL10Ac5g11497 Beta vulgaris HOM05D006253 ORTHO05D007666 2.0e-61 239.6 173 72.8
MSTRG.27724 Avicennia marina HOM05D006253 ORTHO05D007666 3.5e-61 238.8 173 72.3
Ca_01013_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 4.5e-61 238.4 168 73.8
AT4G34412 Arabidopsis thaliana HOM05D006253 ORTHO05D007666 5.9e-61 238.0 174 74.7
AL7G16840 Arabidopsis lyrata HOM05D006253 ORTHO05D007666 1.0e-60 237.3 174 74.1
Thhalv10026394m.g Eutrema salsugineum HOM05D006253 ORTHO05D007666 1.0e-60 237.3 174 74.1
Carub.0007s0590 Capsella rubella HOM05D006253 ORTHO05D007666 2.2e-60 236.1 174 73.6
CARHR242350 Cardamine hirsuta HOM05D006253 ORTHO05D007666 5.0e-60 235.0 174 73.0
BcaNung06978 Brassica carinata HOM05D006253 ORTHO05D007666 6.5e-60 234.6 174 74.7
A01p04020 Brassica napus HOM05D006253 ORTHO05D007666 6.5e-60 234.6 174 75.3
Os01g0142200 Oryza sativa ssp. japonica HOM05D006253 ORTHO05D007666 6.5e-60 234.6 174 73.6
HPP92_001047 Vanilla planifolia HOM05D006253 ORTHO05D007666 6.5e-60 234.6 173 72.3
BraA03t15367Z Brassica rapa HOM05D006253 ORTHO05D007666 8.5e-60 234.2 174 74.7
Aa31LG2G16330 Aethionema arabicum HOM05D006253 ORTHO05D007666 1.5e-59 233.4 174 74.1
Duzib052G0633 Durio zibethinus HOM05D006253 ORTHO05D007666 1.5e-59 233.4 145 84.1
C07p60590 Brassica napus HOM05D006253 ORTHO05D007666 1.9e-59 233.0 174 74.1
arahy.Tifrunner.gnm1.ann1.1E2X9I Arachis hypogaea HOM05D006253 ORTHO05D007666 2.5e-59 232.6 151 79.5
Medtr8g099835 Medicago truncatula HOM05D006253 ORTHO05D007666 1.2e-58 230.3 150 81.3
Zm00001eb124670 Zea mays HOM05D006253 ORTHO05D007666 1.2e-58 230.3 174 72.4
Atru.chr5.2705 Acer truncatum HOM05D006253 ORTHO05D007666 1.8e-57 226.5 175 74.3
FAN20G2826 Fragaria x ananassa HOM05D006253 ORTHO05D007666 3.0e-57 225.7 173 72.8
Psat5g098280 Pisum sativum HOM05D006253 ORTHO05D007666 5.7e-56 221.5 145 80.7
MBI02_g02992_MAGBIO Magnolia biondii HOM05D006253 ORTHO05D007666 9.8e-56 220.7 145 81.4
Glyma.06G172100 Glycine max HOM05D006253 ORTHO05D007666 1.1e-54 217.2 146 76.0
Solyc01g108260.4 Solanum lycopersicum HOM05D006253 ORTHO05D007666 1.1e-54 217.2 150 76.0
CSS0003209 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 1.8e-54 216.5 144 79.2
HanXRQChr10g0319791 Helianthus annuus HOM05D006253 ORTHO05D007666 1.8e-54 216.5 152 75.7
PSO478G4849 Papaver somniferum HOM05D006253 ORTHO05D007666 7.0e-54 214.5 145 79.3
Mapoly0083s0082 Marchantia polymorpha HOM05D006253 ORTHO05D007666 2.0e-53 213.0 166 66.9
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 1.0e-52 210.7 145 78.6
AagrBONN_evm.TU.Sc2ySwM_344.4457 Anthoceros agrestis HOM05D006253 ORTHO05D007666 1.7e-52 209.9 166 62.7
Sed0021593 Sechium edule HOM05D006253 ORTHO05D007666 5.0e-52 208.4 173 66.5
DCAR_007862 Daucus carota HOM05D006253 ORTHO05D007666 1.9e-51 206.5 145 75.9
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 3.3e-51 205.7 151 74.8
FAN15G3440 Fragaria x ananassa HOM05D006253 ORTHO05D007666 8.0e-50 201.1 173 67.6
Hund00335 Selenicereus undatus HOM05D006253 ORTHO05D007666 5.2e-49 198.4 173 65.3
SMO351G0094 Selaginella moellendorffii HOM05D006253 ORTHO05D007666 2.6e-48 196.1 166 62.7
Pp3c22_3990 Physcomitrium patens HOM05D006253 ORTHO05D007666 1.1e-46 190.7 176 56.2
CBR_g38557 Chara braunii HOM05D006253 ORTHO05D007666 1.4e-41 173.7 166 54.8
AUR62029937 Chenopodium quinoa HOM05D006253 ORTHO05D007666 6.8e-41 171.4 122 75.4
AUR62033746 Chenopodium quinoa HOM05D006253 ORTHO05D007666 1.4e-38 163.7 145 62.8
Phvul.002G266500 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 1.9e-38 163.3 112 76.8
MD10G1094500 Malus domestica HOM05D006253 ORTHO05D007666 2.4e-38 162.9 97 90.7
SEGI_00233 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 1.2e-37 160.6 117 70.1
BolC1t00422H Brassica oleracea HOM05D006253 ORTHO05D007666 3.5e-37 159.1 116 76.7
CSS0033941 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 1.3e-36 157.1 140 67.1
Medtr2g105210 Medicago truncatula HOM05D006253 ORTHO05D007666 3.6e-34 149.1 125 68.0
C01p04340 Brassica napus HOM05D006253 ORTHO05D007666 5.8e-32 141.7 101 78.2
Prupe.4G258000 Prunus persica HOM05D006253 ORTHO05D007666 1.9e-30 136.7 101 73.3
Prupe.6G016400 Prunus persica HOM05D006253 ORTHO05D007666 9.2e-30 134.4 128 62.5
vmacro19500 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 1.2e-26 124.0 165 50.9
Cc02_g18770 Coffea canephora HOM05D006253 ORTHO05D007666 1.6e-26 123.6 90 71.1
A03p62890 Brassica napus HOM05D000211 ORTHO05D007666 6.2e-26 121.7 95 70.5
Cre01.g030950 Chlamydomonas reinhardtii HOM05D006253 ORTHO05D007666 4.0e-25 119.0 166 40.4
MCO10G211 Micromonas commoda HOM05D006253 ORTHO05D007666 2.0e-24 116.7 162 43.2
vmacro06019 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 4.4e-24 115.5 96 70.8
Ah.10g034240 Amaranthus hybridus HOM05D006253 ORTHO05D007666 5.8e-24 115.2 87 71.3
Gorai.005G238200 Gossypium raimondii HOM05D006253 ORTHO05D007666 5.8e-24 115.2 104 60.6
SalBow3G2580 Salvia bowleyana HOM05D006253 ORTHO05D007666 8.4e-23 111.3 121 53.7
PRCOL_00001305 Prasinoderma coloniale HOM05D006253 ORTHO05D007666 2.4e-22 109.8 184 40.8
Gohir.D02G210201 Gossypium hirsutum HOM05D006253 ORTHO05D007666 2.8e-18 96.3 104 55.8
ClCG05G009990 Citrullus lanatus HOM05D006253 ORTHO05D007666 3.6e-18 95.9 123 48.8
Sabra09G0078100 Salix brachista HOM05D006253 ORTHO05D007666 3.6e-18 95.9 87 65.5
Hma1.2p1_0804F.1_g221060 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 1.8e-17 93.6 73 74.0
Prupe.2G172700 Prunus persica HOM05D006253 ORTHO05D007666 2.0e-16 90.1 51 90.2
Prupe.4G259300 Prunus persica HOM05D006253 ORTHO05D007666 7.6e-16 88.2 88 60.2
Hma1.2p1_0674F.1_g201500 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 9.3e-14 81.3 56 76.8
Migut.N01188 Erythranthe guttata HOM05D006253 ORTHO05D007666 6.0e-13 78.6 54 74.1
Oeu025576.2 Olea europaea HOM05D006253 ORTHO05D007666 6.0e-13 78.6 64 67.2
SEGI_00525 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 1.1e-11 74.3 56 66.1
Aqoxy5G01240 Aquilegia oxysepala HOM05D006253 ORTHO05D007666 9.6e-11 71.2 59 64.4
Migut.N01189 Erythranthe guttata HOM05D006253 ORTHO05D007666 4.8e-10 68.9 47 74.5


User provided reference genes

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