Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 2.4e-258 895.2 513 100.0
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 4.2e-223 778.1 518 85.3
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 2.4e-178 629.4 414 82.6
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 1.3e-176 623.6 483 71.0
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 1.4e-170 603.6 511 67.5
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 7.8e-169 597.8 531 65.7
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 1.3e-168 597.0 531 66.1
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 3.0e-168 595.9 518 66.4
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 7.3e-167 591.3 518 67.8
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 1.2e-166 590.5 490 68.2
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 1.6e-166 590.1 521 67.2
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 3.4e-164 582.4 490 68.4
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 4.4e-164 582.0 487 66.5
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 4.4e-164 582.0 411 78.1
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 1.7e-163 580.1 490 66.7
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 8.3e-163 577.8 410 78.3
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 1.1e-162 577.4 528 65.2
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 3.5e-161 572.4 469 67.6
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 5.1e-160 568.5 496 66.1
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 5.6e-159 565.1 472 68.6
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 4.7e-158 562.0 569 59.8
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 5.2e-157 558.5 498 63.7
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 1.5e-156 557.0 527 65.7
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 2.6e-156 556.2 510 62.9
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 7.6e-156 554.7 519 62.4
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 2.2e-155 553.1 516 63.6
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 3.7e-155 552.4 516 63.6
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 4.1e-154 548.9 473 64.1
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 5.4e-154 548.5 504 65.1
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 7.1e-154 548.1 521 61.4
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 1.6e-153 547.0 491 63.5
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 7.8e-153 544.7 506 62.3
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 5.1e-152 542.0 408 71.1
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 8.6e-152 541.2 485 63.3
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 8.6e-152 541.2 500 62.8
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.9e-151 540.0 417 68.1
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 7.3e-151 538.1 512 63.1
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 1.6e-150 537.0 510 62.0
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 2.4e-149 533.1 510 61.6
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 2.4e-149 533.1 522 60.7
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 2.4e-149 533.1 493 67.7
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 3.1e-149 532.7 501 61.1
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.2e-148 530.8 401 75.1
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 9.9e-148 527.7 410 68.8
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 1.3e-147 527.3 536 58.8
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 2.9e-147 526.2 520 58.7
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 8.4e-147 524.6 522 60.5
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 1.4e-146 523.9 518 60.4
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 1.4e-146 523.9 518 60.4
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 3.2e-146 522.7 420 66.9
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 3.2e-146 522.7 485 59.8
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 4.2e-146 522.3 522 64.0
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 9.3e-146 521.2 526 57.6
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 9.3e-146 521.2 505 60.8
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 4.6e-145 518.8 507 59.0
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 6.0e-145 518.5 517 61.3
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 6.0e-145 518.5 467 63.8
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 1.0e-144 517.7 525 57.5
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 1.7e-144 516.9 528 61.2
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 2.3e-144 516.5 516 59.1
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 1.5e-143 513.8 525 60.8
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 1.9e-143 513.5 522 62.5
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 4.3e-143 512.3 512 59.8
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 5.6e-143 511.9 538 58.2
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 9.6e-143 511.1 519 58.2
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 1.3e-142 510.8 521 58.3
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 1.6e-142 510.4 512 62.7
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 2.1e-142 510.0 529 61.4
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 2.1e-142 510.0 413 66.8
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 2.1e-142 510.0 522 57.1
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 2.8e-142 509.6 532 60.9
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 6.2e-142 508.4 528 59.3
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 8.1e-142 508.1 530 56.6
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 1.1e-141 507.7 515 58.6
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.1e-141 507.7 413 66.6
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 3.1e-141 506.1 525 56.2
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 1.2e-140 504.2 518 60.6
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 1.5e-140 503.8 418 67.5
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 1.5e-140 503.8 514 63.2
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 3.8e-139 499.2 516 57.4
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 2.4e-138 496.5 531 57.3
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 7.1e-138 495.0 515 57.5
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 9.3e-138 494.6 544 58.8
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 1.2e-137 494.2 518 56.9
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 1.0e-136 491.1 503 62.8
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.7e-136 490.3 522 59.6
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 6.6e-136 488.4 522 58.4
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 1.9e-135 486.9 525 56.4
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 1.9e-135 486.9 525 56.4
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 9.6e-135 484.6 527 60.2
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 8.1e-134 481.5 394 66.0
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 5.3e-133 478.8 426 64.1
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 2.2e-131 473.4 388 66.0
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.1e-130 471.1 416 62.3
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 1.1e-130 471.1 412 63.1
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 1.4e-130 470.7 524 58.0
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 4.2e-130 469.2 517 57.3
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.6e-129 467.2 417 61.6
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 2.1e-129 466.8 409 61.6
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 4.6e-129 465.7 491 54.4
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 3.3e-127 459.5 393 65.4
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 9.6e-127 458.0 405 63.0
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 2.8e-126 456.4 411 59.9
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 2.4e-125 453.4 366 68.9
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 1.0e-123 448.0 478 54.2
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 1.7e-123 447.2 520 59.2
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 7.1e-122 441.8 389 62.5
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 1.9e-114 417.2 376 64.4
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 9.3e-114 414.8 358 65.1
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 2.2e-110 403.7 381 59.1
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 2.4e-101 373.6 550 47.6
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 3.1e-101 373.2 376 60.6
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 6.3e-94 349.0 486 44.4
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 2.2e-91 340.5 315 58.1
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 6.5e-91 339.0 275 68.0
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 8.5e-91 338.6 275 68.0
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 1.9e-90 337.4 317 65.0
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 1.6e-81 307.8 481 40.3
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 2.7e-81 307.0 529 39.3
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 2.0e-79 300.8 290 55.9
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 5.7e-79 299.3 340 53.2
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 4.5e-76 289.7 233 66.5
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 5.0e-75 286.2 621 37.8
RcHm_v2.0_Chr6g0259571 Rosa chinensis HOM05D004816 ORTHO05D006043 3.0e-72 276.9 177 85.3
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 1.2e-71 275.0 305 53.1
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 7.5e-71 272.3 376 49.7
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 2.8e-70 270.4 498 38.0
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 3.3e-58 230.3 267 54.3
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 1.3e-51 208.4 475 35.6
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 2.3e-43 181.0 156 59.6
Cpa.g.sc62.69 Carica papaya HOM05D004816 ORTHO05D006043 3.0e-43 180.6 144 68.8
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 3.3e-42 177.2 158 63.9
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 9.5e-42 175.6 237 54.4
TWI79G0508 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 6.9e-32 142.9 109 68.8
Atru.chr13.510 Acer truncatum HOM05D004816 ORTHO05D006043 2.9e-30 137.5 106 70.8
Atru.chr8.2607 Acer truncatum HOM05D004816 ORTHO05D006043 2.9e-30 137.5 106 70.8
Gohir.A01G005566 Gossypium hirsutum HOM05D004816 ORTHO05D006043 1.3e-27 128.6 126 57.9
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 3.9e-27 127.1 145 51.0
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 7.1e-21 106.3 184 51.6
SEGI_20581 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 6.0e-20 103.2 144 48.6
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 2.8e-17 94.4 167 38.9
arahy.Tifrunner.gnm1.ann1.MV8GC5 Arachis hypogaea HOM05D004816 ORTHO05D006043 5.3e-16 90.1 83 60.2
Atru.chr8.2606 Acer truncatum HOM05D004816 ORTHO05D006043 9.0e-16 89.4 56 78.6
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 2.6e-15 87.8 95 55.8
Psat0s2233g0240 Pisum sativum HOM05D004816 ORTHO05D006043 7.6e-15 86.3 107 45.8
Duzib052G0890 Durio zibethinus HOM05D004816 ORTHO05D006043 1.3e-14 85.5 70 68.6
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 4.2e-13 80.5 170 38.2
Actinidia00469 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.0e-11 75.9 75 57.3
arahy.Tifrunner.gnm1.ann1.JF64TB Arachis hypogaea HOM05D004816 ORTHO05D006043 1.2e-07 62.4 115 45.2
CSS0045496 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.2e-07 62.4 170 31.8
Sopen01g051070 Solanum pennellii HOM05D004816 ORTHO05D006043 2.0e-07 61.6 88 43.2
CSS0009254 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 3.4e-07 60.8 165 32.1
CSS0049387 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.7e-06 58.5 59 50.8


User provided reference genes

Program Settings